Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0178300-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:5318347:5326199:1 gene:Os04g0178300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ENT-COPALYL DIPHOSPHATE SYNTHASE 4 description:Similar to Isoform 3 of Syn-copalyl diphosphate synthase. (Os04t0178300-01);Similar to Syn-copalyl diphosphate synthase. (Os04t0178300-02)
Sequence	TTTTCAGGGCCCATGCTAATAAGCAAATCACCGCCGTACCCGGCCTCGGAAGAAACACGC GAATGGGAAGCAGATGGACAACATGAACACACGGATGAACTAAGAGAGACGACGACAACC ATGATCGATGGCATCAGGACAGCACTGAGATCAATCGGAGAGGGAGAGATTAGCATCTCA GCCTATGACACTTCGTTGGTTGCCCTTCTGAAGAGGCTAGATGGGGGTGATGGTCCTCAG TTCCCATCAACCATCGACTGGATCGTTCAGAATCAGCTACCGGATGGTTCATGGGGTGAT GCCTCCTTCTTCATGATGGGAGACCGGATCATGAGCACCCTCGCTTGTGTTGTAGCGTTG AAGTCATGGAACATCCACACCGATAAATGCGAGAGAGGTTTGTTGTTTATCCAAGAAAAT ATGTGGAGGTTGGCCCATGAGGAAGAAGACTGGATGCTAGTTGGATTTGAGATTGCCTTG CCCTCGCTCCTAGACATGGCTAAGGACCTGGATCTTGACATCCCTTACGATGAGCCAGCC TTGAAAGCAATATATGCCGAGAGAGAAAGGAAGCTTGCCAAGATTCCAAGAGACGTGCTA CACTCTATGCCAACAACTTTACTTCATAGCCTTGAGGGAATGGTTGACTTGGACTGGGAA AAGCTCCTCAAGCTCCGGTGTCTCGATGGGTCCTTCCATTGCTCCCCTGCTTCGACGGCT ACTGCTTTCCAGCAAACAGGAGACCAGAAATGCTTTGAATACCTCGATGGAATCGTCAAA AAGTTCAATGGAGGAGTTCCCTGTATCTACCCTTTGGATGTGTACGAACGCTTATGGGCC GTCGATAGGCTGACGAGGCTGGGCATATCAAGGCACTTCACAAGTGAAATTGAGGATTGC TTAGACTACATTTTCAGGAACTGGACTCCAGATGGATTAGCTCACACAAAGAACTGCCCG GTAAAGGATATCGATGACACGGCCATGGGTTTCCGTCTCCTCCGACTTTACGGATACCAA GTCGACCCATGTGTGTTGAAGAAGTTCGAAAAGGATGGCAAGTTCTTCTGCTTGCACGGG GAGTCCAACCCATCCTCTGTCACCCCAATGTACAACACTTACCGGGCCTCCCAGCTCAAA TTTCCTGGCGATGACGGTGTCCTTGGGCGAGCTGAGGTGTTTTGCCGCTCATTCCTCCAA GACAGGAGAGGCTCAAACAGAATGAAGGACAAGTGGGCCATCGCCAAGGATATCCCAGGC GAGGTTGAGTATGCTATGGACTACCCATGGAAAGCAAGTTTACCGCGTATTGAAACAAGG TTGTACTTGGATCAATATGGAGGTAGTGGCGATGTATGGATTGGGAAGGTCCTGCACAGG ATGACTCTTTTCTGCAACGACCTGTACCTCAAGGCAGCTAAAGCTGACTTCAGTAATTTC CAGAAAGAATGCCGAGTTGAGTTGAATGGCCTTAGAAGGTGGTACTTGAGGAGTAATCTG GAGAAGTTTGGAGGGACTGATCCACAGACTACACTGATGACATCCTACTTCTTAGCTTCA GCCAACATCTTCGAGGCAAACCGAGCAGCGGAACGTCTTGGATGGGCTCGCGTAGCGTTG CTTGCCGATGCCGTCTCCTCTCACTTCAGGAGAATCGGGGGACCAAAAAATTCGACCAGC AATCTTGAAGAGCTTATCAGCCTTGTTCCTTTTGACGACGCTTATTCTGGCAGTCTTCGT GAAGCTTGGAAGCAGTGGTTGATGGCATGGACTGCAAAGGAGAGCAGCCAGGAGTCAATT GAAGGGGACACGGCAATATTGTTGGTTCGTGCCATCGAGATTTTTGGAGGACGGCATGTT TTGACCGGGCAAAGACCGGACCTTTGGGAGTATTCCCAGCTCGAGCAGCTCACCTCCTCC ATCTGCTGCAAACTTTCCAGGAGGGTTCTTGCCCAGGAGAATGGGGAAAGTACGGAGAAA GTTGAGGAGATAGACCAGCAAGTGGATTTGGAGATGCAGGAATTGACTCGGCGCGTTCTA CAGGGCTGCAGCGCTATTAACAGACTAACCCGGGAGACGTTTCTCCATGTGGTGAAGAGC TTCTGCTATGTCGCCTACTGCTCACCTGAGACAATTGATAGCCACATCGACAAGGTCATA TTCCAAGATGTGATTTAG

Peptide Sequence

PEP ID	Os04t0178300-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:5318347:5326199:1 gene:Os04g0178300 transcript:Os04t0178300-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ENT-COPALYL DIPHOSPHATE SYNTHASE 4 description:Similar to Isoform 3 of Syn-copalyl diphosphate synthase. (Os04t0178300-01);Similar to Syn-copalyl diphosphate synthase. (Os04t0178300-02)
Sequence	FSGPMLISKSPPYPASEETREWEADGQHEHTDELRETTTTMIDGIRTALRSIGEGEISIS AYDTSLVALLKRLDGGDGPQFPSTIDWIVQNQLPDGSWGDASFFMMGDRIMSTLACVVAL KSWNIHTDKCERGLLFIQENMWRLAHEEEDWMLVGFEIALPSLLDMAKDLDLDIPYDEPA LKAIYAERERKLAKIPRDVLHSMPTTLLHSLEGMVDLDWEKLLKLRCLDGSFHCSPASTA TAFQQTGDQKCFEYLDGIVKKFNGGVPCIYPLDVYERLWAVDRLTRLGISRHFTSEIEDC LDYIFRNWTPDGLAHTKNCPVKDIDDTAMGFRLLRLYGYQVDPCVLKKFEKDGKFFCLHG ESNPSSVTPMYNTYRASQLKFPGDDGVLGRAEVFCRSFLQDRRGSNRMKDKWAIAKDIPG EVEYAMDYPWKASLPRIETRLYLDQYGGSGDVWIGKVLHRMTLFCNDLYLKAAKADFSNF QKECRVELNGLRRWYLRSNLEKFGGTDPQTTLMTSYFLASANIFEANRAAERLGWARVAL LADAVSSHFRRIGGPKNSTSNLEELISLVPFDDAYSGSLREAWKQWLMAWTAKESSQESI EGDTAILLVRAIEIFGGRHVLTGQRPDLWEYSQLEQLTSSICCKLSRRVLAQENGESTEK VEEIDQQVDLEMQELTRRVLQGCSAINRLTRETFLHVVKSFCYVAYCSPETIDSHIDKVI FQDVI

Transcript Sequence

Transcript ID	Os04t0178300-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:5318347:5326199:1 gene:Os04g0178300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ENT-COPALYL DIPHOSPHATE SYNTHASE 4 description:Similar to Isoform 3 of Syn-copalyl diphosphate synthase. (Os04t0178300-01);Similar to Syn-copalyl diphosphate synthase. (Os04t0178300-02)
Sequence	ATATACGTATCATTAATTGCTGGGTTCTACAATTAATGTTCCGGTGAACTAAACTTTTCT ATGGACGGAGGGAGTAATTAAGACGATAACGGAATGTCTAATAATTAAATGACAGTGCAT GCTGTCTGTTTCTTTATGTAGGATTTTCATGTAGTCCTTTCGTTTAAAAATGCATGGTGC CGTTGACTTTTCACACAACGTTTGACTATTTGTCTTATTAAATTTTTTTATATAAATATC ATTTATTTCTTTATGACTTGTTTTATTATCAAATAAAATATAATCTTAACTTATACATTT ACATATTTATACTAAATTTTTGAATAAGATAAATAGTTAAACGTTATGTGAAAAGTTAAC GGCGTCGTACATTTTTAAATGGAGGGAGTACTTGATAAACATTCTCACCTCACCTCACCT CCCATATATGCCTGATTTTCAGGGCCCATGCTAATAAGCAAATCACCGCCGTACCCGGCC TCGGAAGAAACACGCGAATGGGAAGCAGATGGACAACATGAACACACGGATGAACTAAGA GAGACGACGACAACCATGATCGATGGCATCAGGACAGCACTGAGATCAATCGGAGAGGGA GAGATTAGCATCTCAGCCTATGACACTTCGTTGGTTGCCCTTCTGAAGAGGCTAGATGGG GGTGATGGTCCTCAGTTCCCATCAACCATCGACTGGATCGTTCAGAATCAGCTACCGGAT GGTTCATGGGGTGATGCCTCCTTCTTCATGATGGGAGACCGGATCATGAGCACCCTCGCT TGTGTTGTAGCGTTGAAGTCATGGAACATCCACACCGATAAATGCGAGAGAGGTTTGTTG TTTATCCAAGAAAATATGTGGAGGTTGGCCCATGAGGAAGAAGACTGGATGCTAGTTGGA TTTGAGATTGCCTTGCCCTCGCTCCTAGACATGGCTAAGGACCTGGATCTTGACATCCCT TACGATGAGCCAGCCTTGAAAGCAATATATGCCGAGAGAGAAAGGAAGCTTGCCAAGATT CCAAGAGACGTGCTACACTCTATGCCAACAACTTTACTTCATAGCCTTGAGGGAATGGTT GACTTGGACTGGGAAAAGCTCCTCAAGCTCCGGTGTCTCGATGGGTCCTTCCATTGCTCC CCTGCTTCGACGGCTACTGCTTTCCAGCAAACAGGAGACCAGAAATGCTTTGAATACCTC GATGGAATCGTCAAAAAGTTCAATGGAGGAGTTCCCTGTATCTACCCTTTGGATGTGTAC GAACGCTTATGGGCCGTCGATAGGCTGACGAGGCTGGGCATATCAAGGCACTTCACAAGT GAAATTGAGGATTGCTTAGACTACATTTTCAGGAACTGGACTCCAGATGGATTAGCTCAC ACAAAGAACTGCCCGGTAAAGGATATCGATGACACGGCCATGGGTTTCCGTCTCCTCCGA CTTTACGGATACCAAGTCGACCCATGTGTGTTGAAGAAGTTCGAAAAGGATGGCAAGTTC TTCTGCTTGCACGGGGAGTCCAACCCATCCTCTGTCACCCCAATGTACAACACTTACCGG GCCTCCCAGCTCAAATTTCCTGGCGATGACGGTGTCCTTGGGCGAGCTGAGGTGTTTTGC CGCTCATTCCTCCAAGACAGGAGAGGCTCAAACAGAATGAAGGACAAGTGGGCCATCGCC AAGGATATCCCAGGCGAGGTTGAGTATGCTATGGACTACCCATGGAAAGCAAGTTTACCG CGTATTGAAACAAGGTTGTACTTGGATCAATATGGAGGTAGTGGCGATGTATGGATTGGG AAGGTCCTGCACAGGATGACTCTTTTCTGCAACGACCTGTACCTCAAGGCAGCTAAAGCT GACTTCAGTAATTTCCAGAAAGAATGCCGAGTTGAGTTGAATGGCCTTAGAAGGTGGTAC TTGAGGAGTAATCTGGAGAAGTTTGGAGGGACTGATCCACAGACTACACTGATGACATCC TACTTCTTAGCTTCAGCCAACATCTTCGAGGCAAACCGAGCAGCGGAACGTCTTGGATGG GCTCGCGTAGCGTTGCTTGCCGATGCCGTCTCCTCTCACTTCAGGAGAATCGGGGGACCA AAAAATTCGACCAGCAATCTTGAAGAGCTTATCAGCCTTGTTCCTTTTGACGACGCTTAT TCTGGCAGTCTTCGTGAAGCTTGGAAGCAGTGGTTGATGGCATGGACTGCAAAGGAGAGC AGCCAGGAGTCAATTGAAGGGGACACGGCAATATTGTTGGTTCGTGCCATCGAGATTTTT GGAGGACGGCATGTTTTGACCGGGCAAAGACCGGACCTTTGGGAGTATTCCCAGCTCGAG CAGCTCACCTCCTCCATCTGCTGCAAACTTTCCAGGAGGGTTCTTGCCCAGGAGAATGGG GAAAGTACGGAGAAAGTTGAGGAGATAGACCAGCAAGTGGATTTGGAGATGCAGGAATTG ACTCGGCGCGTTCTACAGGGCTGCAGCGCTATTAACAGACTAACCCGGGAGACGTTTCTC CATGTGGTGAAGAGCTTCTGCTATGTCGCCTACTGCTCACCTGAGACAATTGATAGCCAC ATCGACAAGGTCATATTCCAAGATGTGATTTAGGAACAAATTACCCCGACTCATCTACAC TCCTTATAAAAGAGAGTAGTGGTGGTGTTGGTTCTGCCACCCCCACCTCCACTACCAATT CCCGACCTTTATAGAATAAAGATGTGTCTTTTGTATTAAGTTTGTTGTGGTGTACCTCGT GTTTTTCC