Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0177400-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:5263669:5266752:-1 gene:Os04g0177400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Riboflavin biosynthesis protein ribD. (Os04t0177400-01)
Sequence

ATGGCAGGTCTCGTAATTTTTCTTTTTTTGCTTCCGCCGCGGCGCCACCCCCGTCCGCCC
GTCCCTTCGCCGGAAGCGGCGACTTCCAACGGCGTCCTCTCCTCCTCGGCGCCGCGGCCA
TGGCCTCCTCGCCCGTCTCGCTCTCGCGCCGCCACCACCTCACCCCGCGCCCCGCCGCCT
CCACCTCCACCTCCCTTCGCCGCTCGCGCCTCCCGGTCGGGTGCGCCGCGGCTGGCCTGC
GCCGACATGGACGACGACGGGGTCTACATCCGCTGGTGCGTGGAGCTGGCGCGCAAGGCG
GCCGGCCACACCAGCCCGAATCCCATGGTGGGCTGCGTTGTTGTCCGCGGCGGCCGCGTC
GTCGGCGAGGGGTTCCACCCCGAAGCCGGCCAGCCCCACGCCGAGGTATTTGCTCTGAGA
GATGCTAGGGATTTAGCAGAGAATGCGACGGCTTATGTGAGCTTGGAGCCCTGCAACCAT
TACGGGAGGACACCTCCCTGCACCGAAGCACTCATCAATGCCAAACTTAAGGATGTCGTG
GTTGGGATGACTGATCCAAATCCTATTGTGGCATCCAAGGGGATTGAAAGGCTCCAAAGT
GCTGGGATTGATGTCAGGGTGTGTATGGAGGAAGAAGCGTTATGCCGCAACCTAAATGAG
GCTTATATCCATTGCATGCTTACTGGGAAGGCCTTTGCAACTTTGAGAACTACGCTCTCT
GTGAATGGAGTCGTCGTAAATCAAATTGGGACTGGAGCTGATCAACCCGGAGGGTATTAC
TCACAGTTACTGAAAGAATATGATGGAGTCATAATTTCAGGCATTTCGGTCAATATGACT
ACCTTGCCTACATCCCATGAAGCTGGTGCAAAGCAGCCTCTTTATATCATCATAGCACAG
GGAGGAAATTCCCAATTAAATATTCAGTTTCTCAGAGAAGAATGCGCATCTGAGGCAGTA
GTTCTGACTGACAGTCCTGTCACCGTGAAGCCACCAGGAGTTGAAGTTTTAGTCCTTGAT
CGGATGAGCTTGGAGTTCATTCTTGAAATTCTCGCCCAGCGAGGGCTATGTAGTGTGTTG
GTGGATTTTAGGGAGGCTGGAGGAGACTTTGCATATCTTCTGAAAAACTTTCAGGAGGAG
AAGCTGGTACAGAAGGTTGTTGTGGAGCTCCTGCCTATCTGGACAGTGACCAAAGCCTCA
AAGGGCAGAAGTTAG

Peptide Sequence

PEP ID

Os04t0177400-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:5263669:5266752:-1 gene:Os04g0177400 transcript:Os04t0177400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Riboflavin biosynthesis protein ribD. (Os04t0177400-01)
Sequence

MAGLVIFLFLLPPRRHPRPPVPSPEAATSNGVLSSSAPRPWPPRPSRSRAATTSPRAPPP
PPPPPFAARASRSGAPRLACADMDDDGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRV
VGEGFHPEAGQPHAEVFALRDARDLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVV
VGMTDPNPIVASKGIERLQSAGIDVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLS
VNGVVVNQIGTGADQPGGYYSQLLKEYDGVIISGISVNMTTLPTSHEAGAKQPLYIIIAQ
GGNSQLNIQFLREECASEAVVLTDSPVTVKPPGVEVLVLDRMSLEFILEILAQRGLCSVL
VDFREAGGDFAYLLKNFQEEKLVQKVVVELLPIWTVTKASKGRS

Transcript Sequence

Transcript ID

Os04t0177400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:5263669:5266752:-1 gene:Os04g0177400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Riboflavin biosynthesis protein ribD. (Os04t0177400-01)
Sequence

AAGAGAGGAGGAGATCAACGAAATGGCAGGTCTCGTAATTTTTCTTTTTTTGCTTCCGCC
GCGGCGCCACCCCCGTCCGCCCGTCCCTTCGCCGGAAGCGGCGACTTCCAACGGCGTCCT
CTCCTCCTCGGCGCCGCGGCCATGGCCTCCTCGCCCGTCTCGCTCTCGCGCCGCCACCAC
CTCACCCCGCGCCCCGCCGCCTCCACCTCCACCTCCCTTCGCCGCTCGCGCCTCCCGGTC
GGGTGCGCCGCGGCTGGCCTGCGCCGACATGGACGACGACGGGGTCTACATCCGCTGGTG
CGTGGAGCTGGCGCGCAAGGCGGCCGGCCACACCAGCCCGAATCCCATGGTGGGCTGCGT
TGTTGTCCGCGGCGGCCGCGTCGTCGGCGAGGGGTTCCACCCCGAAGCCGGCCAGCCCCA
CGCCGAGGTATTTGCTCTGAGAGATGCTAGGGATTTAGCAGAGAATGCGACGGCTTATGT
GAGCTTGGAGCCCTGCAACCATTACGGGAGGACACCTCCCTGCACCGAAGCACTCATCAA
TGCCAAACTTAAGGATGTCGTGGTTGGGATGACTGATCCAAATCCTATTGTGGCATCCAA
GGGGATTGAAAGGCTCCAAAGTGCTGGGATTGATGTCAGGGTGTGTATGGAGGAAGAAGC
GTTATGCCGCAACCTAAATGAGGCTTATATCCATTGCATGCTTACTGGGAAGGCCTTTGC
AACTTTGAGAACTACGCTCTCTGTGAATGGAGTCGTCGTAAATCAAATTGGGACTGGAGC
TGATCAACCCGGAGGGTATTACTCACAGTTACTGAAAGAATATGATGGAGTCATAATTTC
AGGCATTTCGGTCAATATGACTACCTTGCCTACATCCCATGAAGCTGGTGCAAAGCAGCC
TCTTTATATCATCATAGCACAGGGAGGAAATTCCCAATTAAATATTCAGTTTCTCAGAGA
AGAATGCGCATCTGAGGCAGTAGTTCTGACTGACAGTCCTGTCACCGTGAAGCCACCAGG
AGTTGAAGTTTTAGTCCTTGATCGGATGAGCTTGGAGTTCATTCTTGAAATTCTCGCCCA
GCGAGGGCTATGTAGTGTGTTGGTGGATTTTAGGGAGGCTGGAGGAGACTTTGCATATCT
TCTGAAAAACTTTCAGGAGGAGAAGCTGGTACAGAAGGTTGTTGTGGAGCTCCTGCCTAT
CTGGACAGTGACCAAAGCCTCAAAGGGCAGAAGTTAGAAAAAAGACTGGGAACATGGATG
GGTAACCTATCCCATGCTGGAAGAGCTATTCAAATTAATGCCTGCTTATCTTCAATTCCT
TCATATGCTATGGGCTTTTATTCCCTCCCTGAGGGTGTTCACCACAAATTTGATTCGGTT
AGAGGGAGATATTATTGGGCTGGAAACAAAATAAATGGGAAATACCATATGGTGAAATGG
GAGGATATGGCTTTCCCAAAAGACTTTGGAGGTTTGGGCTTTACTGAAACTAGAGCTATG
AACATTGCTTTGTTGGCAAAATGGATTTTCAAACTAGAATCTCCGGATCAAAGTCTGTGT
ACTTCCCTCCTAAGGAACAAATACCTTCAAGAGGGTGGAGTGTTCCAGTGCAGAGCTGAG
GAGGGCTCCCAATTCTGGAAGGGAGTGCTAAGCACTAGAGATTGGGTGAAACTGGGAACA
GAATGGCTAGTGGGAGATGGTAGACACATTTTATTTTGGAAGGATGTCTGGGTTCACCCT
TGTCCTTTAAAAACATCTTTCCCCTTACTTTTTGAGATTTGCAATCAACAATCTATACTA
GTGGCTGAAATCAAACAGGCTGGGATAGAGGGGCTGTCTTTTAGGAGATCTTTTGGCCCA
AGAGAGATGGATGAATGGGAAGAGCTGAGAGTCATAATTGAGAACATTAGCACTAGCCAG
ACTTATGATACTTTGAGATGGGCTCTAAAGGATAATAAAACCTTCACTACCCAGTCCCTT
TACAGAGTTTTAACTTTCAGGGGGATGATAGACACCCAATTACAACAGCTTTGGAGTGCT
CCTTGCCCTCTAAAGATTAAACACTTCATCTGGTTAGGTTTGAGAGATAGAATTCAAGCC
TCAGCTAATTTAGCAAAAAAGGGTTGGAGTGGTTCAGTCCTGTGTTTACTCTGTGGGGAG
CCAGAGACAACAAAACATATCATTTTCAGATGCCCTATGGCTACTTTTGTTTGGTGTTTG
TGTAGAGATGTGCTGGGTTGGGACCGGATACCTGTCAACTTCGATGATTTTTTCTGTTTA
GCTCAGCTCAGAACTGTTTTCAAACACATGAATGTTAAATTGGCGCTGCTTGCTGCT