Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0166000-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:4485000:4487183:-1 gene:Os04g0166000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0166000-01);Hypothetical conserved gene. (Os04t0166000-02)
Sequence

GAATCATTCAGCTTTGCTTCAAGAGAAGGAAACAAAGCTAAAATCTCATCTATCTCCTTG
GCTGGTTGCTCGAGCTTGGTGAACTTCACATTACGTGGGCCATTGCAAAACCTTAGGGGA
TTGGACCTCTCTGGCACAATGATAAAAATGCTTGACCTTCGAGATGTACAAGACTCATGT
ATTGGACAAATAATTCTGCTACGGTGTGAGAAGCTATGCACCATATTATGGCCAGAGAAA
GGATTCCCAAACCTAAGCATGCTACACATTGATTCATTGGTTTGCCATGTAGAAACAGAG
CAGCAGCAAGCATATGCAACCGTGATGGATTTAAGATTTGTTCAATCCTTGGTGTTAAGA
AGCAATAACAAGTTCTGTTGGAACTGCAATAAGACCCATATAAATATATGCATCTCTTCT
ACCCCAAAAGATGCAACACCAAAAAAGAAGACAATGAGCTATTACAGCGCTCAAAAAGTA
GTTGGCTCACCTCTACACATGCCAATAGTCACCACCATTCAACCTGTTGTTTGCTACAAG
GATGTCAACTTGGCCATGATATCTGCTATTGAGCTGGAAGGCAGCAGTGCACCACGGCAT
GAGCCACTAGACATCCATGTGGAGATCGGAGAGGGAATAAGCTATGCTAATGTTGTCAGT
GAACAAGCATTGAGTGCAGTATCATTTATGATGAACAAGGCCAAGTCTTTGCACGTACAT
GACAATTTTTCAATCACCAGTGTTAACCCTAAACACGTGATTTTGACAGAGGATAAGGAA
ATTACATGGTATTGTCTAAAGAGGTGCCACATTGAGAGATGTCACAAGTTGAACACTGTC
TTCTCTACCGATTATATCAAATACCGCTTTCAAACACTGGAGGCATTTTCAGCAGCTGAG
CTCATGATGGCAAATTGTATTTGGAGCAGAGGAAGGACATTCCCTGGTTGGAACAGTAAT
ATGTTTGCAAAACTGAGGAGTATACACTTACACTACTGTCCGAGGCTCACGTTTGTGCTT
CCACTATCATGGCCTACTCCATACTCACACTTGCCCAGCTTGGAGACTCTCCACATCGTC
TACTGCAGTGAACTCAGACAGATCTTCCCCGTGGAGGCAGTTGCTCTAAGGGAACAACCA
AGAGGTGTGCTGAGATTCCCAAAGCTGAAGCACATCCACCTGCATGATGTCCCCAAGCTG
CATCAGATATGCGAAATCAGCAGGATGGTTGCTCCTGTGCTCGAGACAATCAGGGTGAGG
GGATGCTGGGCTCTCAAGCGCATCCCCGCCATCAACGGTCGCCCAATCGTGGACTGCGAG
AAGGACTGGTGGGAGAAGCTGGAATGGGAGGGGATGAATGTTGGCCATGACCCCTCCCTC
TTTGAGCCTCGCCACTCGATGTACTACAAGAAGGCTCTACCCAGATGCTCTCTTCTCCGG
TGA

Peptide Sequence

PEP ID

Os04t0166000-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:4485000:4487183:-1 gene:Os04g0166000 transcript:Os04t0166000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0166000-01);Hypothetical conserved gene. (Os04t0166000-02)
Sequence

ESFSFASREGNKAKISSISLAGCSSLVNFTLRGPLQNLRGLDLSGTMIKMLDLRDVQDSC
IGQIILLRCEKLCTILWPEKGFPNLSMLHIDSLVCHVETEQQQAYATVMDLRFVQSLVLR
SNNKFCWNCNKTHINICISSTPKDATPKKKTMSYYSAQKVVGSPLHMPIVTTIQPVVCYK
DVNLAMISAIELEGSSAPRHEPLDIHVEIGEGISYANVVSEQALSAVSFMMNKAKSLHVH
DNFSITSVNPKHVILTEDKEITWYCLKRCHIERCHKLNTVFSTDYIKYRFQTLEAFSAAE
LMMANCIWSRGRTFPGWNSNMFAKLRSIHLHYCPRLTFVLPLSWPTPYSHLPSLETLHIV
YCSELRQIFPVEAVALREQPRGVLRFPKLKHIHLHDVPKLHQICEISRMVAPVLETIRVR
GCWALKRIPAINGRPIVDCEKDWWEKLEWEGMNVGHDPSLFEPRHSMYYKKALPRCSLLR

Transcript Sequence

Transcript ID

Os04t0166000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:4485000:4487183:-1 gene:Os04g0166000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os04t0166000-01);Hypothetical conserved gene. (Os04t0166000-02)
Sequence

TGAATCATTCAGCTTTGCTTCAAGAGAAGGAAACAAAGCTAAAATCTCATCTATCTCCTT
GGCTGGTTGCTCGAGCTTGGTGAACTTCACATTACGTGGGCCATTGCAAAACCTTAGGGG
ATTGGACCTCTCTGGCACAATGATAAAAATGCTTGACCTTCGAGATGTACAAGACTCATG
TATTGGACAAATAATTCTGCTACGGTGTGAGAAGCTATGCACCATATTATGGCCAGAGAA
AGGATTCCCAAACCTAAGCATGCTACACATTGATTCATTGGTTTGCCATGTAGAAACAGA
GCAGCAGCAAGCATATGCAACCGTGATGGATTTAAGATTTGTTCAATCCTTGGTGTTAAG
AAGCAATAACAAGTTCTGTTGGAACTGCAATAAGACCCATATAAATATATGCATCTCTTC
TACCCCAAAAGATGCAACACCAAAAAAGAAGACAATGAGCTATTACAGCGCTCAAAAAGT
AGTTGGCTCACCTCTACACATGCCAATAGTCACCACCATTCAACCTGTTGTTTGCTACAA
GGATGTCAACTTGGCCATGATATCTGCTATTGAGCTGGAAGGCAGCAGTGCACCACGGCA
TGAGCCACTAGACATCCATGTGGAGATCGGAGAGGGAATAAGCTATGCTAATGTTGTCAG
TGAACAAGCATTGAGTGCAGTATCATTTATGATGAACAAGGCCAAGTCTTTGCACGTACA
TGACAATTTTTCAATCACCAGTGTTAACCCTAAACACGTGATTTTGACAGAGGATAAGGA
AATTACATGGTATTGTCTAAAGAGGTGCCACATTGAGAGATGTCACAAGTTGAACACTGT
CTTCTCTACCGATTATATCAAATACCGCTTTCAAACACTGGAGGCATTTTCAGCAGCTGA
GCTCATGATGGCAAATTGTATTTGGAGCAGAGGAAGGACATTCCCTGGTTGGAACAGTAA
TATGTTTGCAAAACTGAGGAGTATACACTTACACTACTGTCCGAGGCTCACGTTTGTGCT
TCCACTATCATGGCCTACTCCATACTCACACTTGCCCAGCTTGGAGACTCTCCACATCGT
CTACTGCAGTGAACTCAGACAGATCTTCCCCGTGGAGGCAGTTGCTCTAAGGGAACAACC
AAGAGGTGTGCTGAGATTCCCAAAGCTGAAGCACATCCACCTGCATGATGTCCCCAAGCT
GCATCAGATATGCGAAATCAGCAGGATGGTTGCTCCTGTGCTCGAGACAATCAGGGTGAG
GGGATGCTGGGCTCTCAAGCGCATCCCCGCCATCAACGGTCGCCCAATCGTGGACTGCGA
GAAGGACTGGTGGGAGAAGCTGGAATGGGAGGGGATGAATGTTGGCCATGACCCCTCCCT
CTTTGAGCCTCGCCACTCGATGTACTACAAGAAGGCTCTACCCAGATGCTCTCTTCTCCG
GTGAGGCGACATGCAGACGCTGTATCAACTGCTGCTCACTTGTTAAGATTTACTGATGGA
TCAACCAAGTTGTCTGCATGCTTTCTTCCGTCTCGCTGCAGTGGTTTCGAGTGTTTGCTT
GTTTTCTGAAGAATAAATTGGTGCATCATGTGCTTGCAGCAAGCACCTCTGAGTTGTATA
TATTGTTGTGTGCTTGCATACTAAGTTAATTAATTCGCGTGTGTGTCTCTCAGGGGAGTG
ACGCAGAACCATCTGTGTGTGTGGATTTGTTGATGATGTATGTGCTTGAAATAAGAGGGT
CTGATGGGCCTCTGTGGTGTGCCTACCACTAGTTCCCAGAAGTTCATGGTGTGACAGTGT
GTAATTGCAAACGAATGGACATAAATTAAATATTGATGCTGCATCGTGGTGATGCTGCAA
C