Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0162100-02
CDS Infomation

cds chromosome:IRGSP-1.0:4:4274956:4285258:1 gene:Os04g0162100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EMBRYONIC FLOWER 2A description:Zinc finger, C2H2-like domain containing protein. (Os04t0162100-01);Similar to EMF protein. (Os04t0162100-02)
Sequence

CAGCGCCGCCGCTACTCCCGCTCCCCACCGGCGCGCGCCGCCGTCTCCCCCCACGCCGGC
GCCGCCGTGTACCGGGGCTCCCGACTTCCCCTTCCACCGGAGCTGCTCTTCGGCCTCCTC
CCCCTTCGCCGGCCGCAGCAGCAGAAGCACCCAGCGCCCGTGAGCCCGAGTCGCCCCCCA
CCTCGGCGAGGCCTTGACCTAGGCTGGAATACCGGATGTGAATTTGATTGTCAGAGGTCT
TCAGACCAGATGTGCTGTGAGCACTCTGTCGCTCAGTTCTCTTCAGATCAACAACTTAAC
CCTGAAGAAAATTTAGCTTTATACTGCAAGCCACTTGAGTTGTACAACTTTATTCGACAC
CGAGCCATTGAAAATCCTCCTTATCTTCAAAGATGCCTTCTTTATAAGATACGTGCAAAA
CAAAAAAAAAGGATACAGATAACTATATCATTACCTGGAAGTAACAATAAGGAATTGCAA
GCACAGAATATCTTTCCTCTGTATGTTCTGTTTGCTAGACCTACTTCAAATGTTCCTATA
GAAGGACATTCTCCAATATATCGGTTCAGTCAGGCCCGTTTGCTTACTTCCTTTAATGAC
TCTGGGAATAATGACCGTGCTGAAGCCACATTTGTTATTCCTGATCTGGAGACTTTAATT
GCCACCCAAGCTTATGGTCTTACTTTTATCCTTGTTAGCCGCGGTACCAAAAAAAATAAA
GGGCGAACTGGACAAAATCTTTGTGAAAATGACTGTTCTGAGAAACATGTGGACTACTCT
TCTCTCCGAAAGCTTGCAGGGAAATGTTTCTGGGGTAAAATTCCGATCACTTTACTTAAT
TCATCTTTGGAGACTTGTGCGGATTTAATTTTGGGGCATATAGTGGAGTCACCTATCAGT
ATATGTATGAGCCCAGGCTACTTAGAGCCAACATTTCTTGAGCATGACAATTGCTTGTCA
TTTTGTTCCCGTAAAGCTGATGCTATGGTTCCATATCAGTTGCAAGTAAAAGTATCTGCA
GCAGAGGCTGGTGCAAAAGACATACTCAAATCTCCGTATAATTCCTTCTCATATAGTGAC
GTCCCACCATCCTTATTACTGCGTATTGTAAGGCTAAGAGTTGGAAATGTGCTCTTTAAC
TACAAGAACACACAAATGAGTGAAGTAACGGAAGATTTTACTTGCCCGTTTTGCTTGGTA
CGGTGTGGGAACTTCAAGGGTCTGGAATGTCACATGACTTCATCACATGATCTGTTCCAC
TACGAATTCTGGATATCTGAAGACTACCAGGCTGTTAATGTTACGCTGAAGAAAGATAAC
ATGAGAACAGAGGTAAATTAG

Peptide Sequence

PEP ID

Os04t0162100-02
PEP Infomation

pep chromosome:IRGSP-1.0:4:4274956:4285258:1 gene:Os04g0162100 transcript:Os04t0162100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EMBRYONIC FLOWER 2A description:Zinc finger, C2H2-like domain containing protein. (Os04t0162100-01);Similar to EMF protein. (Os04t0162100-02)
Sequence

QRRRYSRSPPARAAVSPHAGAAVYRGSRLPLPPELLFGLLPLRRPQQQKHPAPVSPSRPP
PRRGLDLGWNTGCEFDCQRSSDQMCCEHSVAQFSSDQQLNPEENLALYCKPLELYNFIRH
RAIENPPYLQRCLLYKIRAKQKKRIQITISLPGSNNKELQAQNIFPLYVLFARPTSNVPI
EGHSPIYRFSQARLLTSFNDSGNNDRAEATFVIPDLETLIATQAYGLTFILVSRGTKKNK
GRTGQNLCENDCSEKHVDYSSLRKLAGKCFWGKIPITLLNSSLETCADLILGHIVESPIS
ICMSPGYLEPTFLEHDNCLSFCSRKADAMVPYQLQVKVSAAEAGAKDILKSPYNSFSYSD
VPPSLLLRIVRLRVGNVLFNYKNTQMSEVTEDFTCPFCLVRCGNFKGLECHMTSSHDLFH
YEFWISEDYQAVNVTLKKDNMRTEVN

Transcript Sequence

Transcript ID

Os04t0162100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:4274956:4285258:1 gene:Os04g0162100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EMBRYONIC FLOWER 2A description:Zinc finger, C2H2-like domain containing protein. (Os04t0162100-01);Similar to EMF protein. (Os04t0162100-02)
Sequence

CCAGCGCCGCCGCTACTCCCGCTCCCCACCGGCGCGCGCCGCCGTCTCCCCCCACGCCGG
CGCCGCCGTGTACCGGGGCTCCCGACTTCCCCTTCCACCGGAGCTGCTCTTCGGCCTCCT
CCCCCTTCGCCGGCCGCAGCAGCAGAAGCACCCAGCGCCCGTGAGCCCGAGTCGCCCCCC
ACCTCGGCGAGGCCTTGACCTAGGCTGGAATACCGGATGTGAATTTGATTGTCAGAGGTC
TTCAGACCAGATGTGCTGTGAGCACTCTGTCGCTCAGTTCTCTTCAGATCAACAACTTAA
CCCTGAAGAAAATTTAGCTTTATACTGCAAGCCACTTGAGTTGTACAACTTTATTCGACA
CCGAGCCATTGAAAATCCTCCTTATCTTCAAAGATGCCTTCTTTATAAGATACGTGCAAA
ACAAAAAAAAAGGATACAGATAACTATATCATTACCTGGAAGTAACAATAAGGAATTGCA
AGCACAGAATATCTTTCCTCTGTATGTTCTGTTTGCTAGACCTACTTCAAATGTTCCTAT
AGAAGGACATTCTCCAATATATCGGTTCAGTCAGGCCCGTTTGCTTACTTCCTTTAATGA
CTCTGGGAATAATGACCGTGCTGAAGCCACATTTGTTATTCCTGATCTGGAGACTTTAAT
TGCCACCCAAGCTTATGGTCTTACTTTTATCCTTGTTAGCCGCGGTACCAAAAAAAATAA
AGGGCGAACTGGACAAAATCTTTGTGAAAATGACTGTTCTGAGAAACATGTGGACTACTC
TTCTCTCCGAAAGCTTGCAGGGAAATGTTTCTGGGGTAAAATTCCGATCACTTTACTTAA
TTCATCTTTGGAGACTTGTGCGGATTTAATTTTGGGGCATATAGTGGAGTCACCTATCAG
TATATGTATGAGCCCAGGCTACTTAGAGCCAACATTTCTTGAGCATGACAATTGCTTGTC
ATTTTGTTCCCGTAAAGCTGATGCTATGGTTCCATATCAGTTGCAAGTAAAAGTATCTGC
AGCAGAGGCTGGTGCAAAAGACATACTCAAATCTCCGTATAATTCCTTCTCATATAGTGA
CGTCCCACCATCCTTATTACTGCGTATTGTAAGGCTAAGAGTTGGAAATGTGCTCTTTAA
CTACAAGAACACACAAATGAGTGAAGTAACGGAAGATTTTACTTGCCCGTTTTGCTTGGT
ACGGTGTGGGAACTTCAAGGGTCTGGAATGTCACATGACTTCATCACATGATCTGTTCCA
CTACGAATTCTGGATATCTGAAGACTACCAGGCTGTTAATGTTACGCTGAAGAAAGATAA
CATGAGAACAGAGGTAAATTAGTGATAAAGGACATACACTGTACCTAATTGACCTAGGTT
TGATGTATCAGGGTTGTGGGATCCAGCCCATGCAAACTAGCATAAATTTTACGTACATGG
CTTAAAAGCTCCATTTCTATTTAATATTGATTTAAGTGAAAATCTTTGTTTTAGAACCAT
TACTCTCTTGAAAGACGGTGTTGGGCATGATGATGTGTTCTACACCCACTCCACTATAAA
ATCTTTTGTGGCTATAAATGTGTACTCATCTGTGTATTGTTTGTAAGATTTTCTAAAACA
ATTGTATAAAGCACACAAGGTTGCCAATGGGTC