Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0153000-00
CDS Infomation

cds chromosome:IRGSP-1.0:4:3635325:3637426:1 gene:Os04g0153000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147M20.4 protein. (Os04t0153000-00)
Sequence

ATGGCAGGAGGGCCCTTGAAGCTGTGGAATGCGTGGGCAACACAGATCCTAGTTCTATTG
AGCCTCACACTGCAGATCGTCCTCCTCCTCTTCGCTGGGATCCGCCGGCGTGAGTCATCT
GCCTTGCTGAGGTTCTTCCTCTGGTTGGCGTACCTGCTGGCTGACTCCACCGCGATATAC
ACCCTCGGGCACCTCTCCCTGAGCAGCGTGACACGTGACCACAAGCTGGTGGCATTCTGG
GCGCCATTCTTGCTTCTCCACCTTGGCAGGCCAGACAACATCACCGCCTATGCGCTGCAG
GACAACCAGCTCTGGTTGCGCCACCTGCAGATTCTTGTCGTCCAAGTTCTTGGAGCCGGG
TATGTCGTCTACAAGCGTCTTATTGTTGGTGGAGAGAAGACGATTCTCCTGCTGGCCACT
GTCTTGATGTTCATGGTTGGCCTCGTCAAGTATTGTGAGAGGACTTTTGCACTGAAGCGC
GGCGACTTCAGCAGCATCCGGAGCTATGTCAAGGAGCTACCGGGTAAGCAACTCCGTTGG
TACAGAGGTTACTTGCAGAGTGAGGATCATTACAACTCCAATGATGAATTCCTTCTGCAG
CGCGCCCACTCCCTATTCCACATCTGCAAGCGTGGGATAGTAGACTCGGTGATCAATGTG
GATATGGATAAAACCGAGGCTGAAATCACAAGAAAATTAATCAACCAGATCAGGAATCCA
CAACAGCCCATGGTCATGTGGAAGGTGATGGAGATGGAGTTGTCCCTGTTGTATGATATT
CTCTACACCAAAGCAGCCGTGATCCACACATGGATTGGCTACTTAATCCGAGCCATGACA
CCGGTTGCCATCGTCTCGTCCTTCCTTCTGTTCCATTTTAGTGATAGCAAAGATGGCCAG
AATGTGGTTGACATCACTGTCACTTATATCTTGTTGGGTGGTGCCCTCATGATGGAGATG
ACATCCCTGCTGAGCGCACTAGGGTCGAGTTGGGCTCTTGCTTTCCTGTGTGCCATTCCA
TGGAGCTCACTTCGGCATGCAGTTTTATGTGCTGGAAGATGGCACCGGCTCCGCCGAGCA
GTCGTGACCCTTCGCCAGGTTGTCATGGCAATGACCGGAGGTTTCCTAGGAAGATCAAGG
AAGTGGTCAGGCACCATAGGTCAGTTCAACATGCTCTACTTCCGTGCTGCACAGATCCAT
GCAACGAACCGACGGTTCGGCACGCTAGCTAAGAAGCTGGGGTGTGAGGATTGGTGGGAC
AGCACTTGTTACTCACACAGTATCAAGATTCCCAATACGGTAAAGGAACGGGCAGTGAAA
ATGGTCTCGAAGCGTGCTATCAACACCCTGGGCTTGCTCAGGCATAGGTGGGGCGAGCTG
GCACTAGATAAAAAGAAGTATCCTAAGCTGGTAGGAGATCTGGAGGAATGGGAGGGTGTT
GACTTCCACGAGAGCATCATCATTTGGCACATCGCCACCGATCTCATCCTCTGTGGGAGA
AACAGGTCCAGTAACGACTCAACAAAAAAGAAAGAAGTTGAACGTGTCCGTTCAATCAGG
GCAATGTCAAATTACCTCATGTTCCTCCTTGTGACTCGCCCTGACATGGTTCCTGGCCTT
CCCCAGAACTGGTTGTACCAACGAACCTGCGATAACCTCGACAAAATATGCAAAGAGAAT
CGTGTGCAACTCATTTCTTCCGGTGGCAGGGCTTACAACATTGTGTTCATGGTTCTCATG
AAGTTGATCCGGGGCAACAATAACAATAGCACAACATCTTATGGGCTTGAGCAGACCAAC
GAACTTGCCAAAATCCTACTTGGGATGAAGGTATCAGGCAAATTCGATCCTTCAGTTCCT
CGCCTCACATATGCACATGGGATCGCTAAGACAGTGTTAGGTTGGAAGGGTGAAGATCAA
ATTGAAGGAATGCAAGATCCAAGTGAAGGGTATTGCATTGACTTATGGACGGATTTTCTC
ATCTATGCAGCCAACCGGTGCAACAGGGAGTCGCATGCCAAAAAACTCAACACTGGGGGC
GAGATCAAAACCGTCGTTTGCCAAAAGGGGGAACACATATACCAAACTAAAGAAAATTAA

Peptide Sequence

PEP ID

Os04t0153000-00
PEP Infomation

pep chromosome:IRGSP-1.0:4:3635325:3637426:1 gene:Os04g0153000 transcript:Os04t0153000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147M20.4 protein. (Os04t0153000-00)
Sequence

MAGGPLKLWNAWATQILVLLSLTLQIVLLLFAGIRRRESSALLRFFLWLAYLLADSTAIY
TLGHLSLSSVTRDHKLVAFWAPFLLLHLGRPDNITAYALQDNQLWLRHLQILVVQVLGAG
YVVYKRLIVGGEKTILLLATVLMFMVGLVKYCERTFALKRGDFSSIRSYVKELPGKQLRW
YRGYLQSEDHYNSNDEFLLQRAHSLFHICKRGIVDSVINVDMDKTEAEITRKLINQIRNP
QQPMVMWKVMEMELSLLYDILYTKAAVIHTWIGYLIRAMTPVAIVSSFLLFHFSDSKDGQ
NVVDITVTYILLGGALMMEMTSLLSALGSSWALAFLCAIPWSSLRHAVLCAGRWHRLRRA
VVTLRQVVMAMTGGFLGRSRKWSGTIGQFNMLYFRAAQIHATNRRFGTLAKKLGCEDWWD
STCYSHSIKIPNTVKERAVKMVSKRAINTLGLLRHRWGELALDKKKYPKLVGDLEEWEGV
DFHESIIIWHIATDLILCGRNRSSNDSTKKKEVERVRSIRAMSNYLMFLLVTRPDMVPGL
PQNWLYQRTCDNLDKICKENRVQLISSGGRAYNIVFMVLMKLIRGNNNNSTTSYGLEQTN
ELAKILLGMKVSGKFDPSVPRLTYAHGIAKTVLGWKGEDQIEGMQDPSEGYCIDLWTDFL
IYAANRCNRESHAKKLNTGGEIKTVVCQKGEHIYQTKEN

Transcript Sequence

Transcript ID

Os04t0153000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:3635325:3637426:1 gene:Os04g0153000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0147M20.4 protein. (Os04t0153000-00)
Sequence

CAATGGCAGGAGGGCCCTTGAAGCTGTGGAATGCGTGGGCAACACAGATCCTAGTTCTAT
TGAGCCTCACACTGCAGATCGTCCTCCTCCTCTTCGCTGGGATCCGCCGGCGTGAGTCAT
CTGCCTTGCTGAGGTTCTTCCTCTGGTTGGCGTACCTGCTGGCTGACTCCACCGCGATAT
ACACCCTCGGGCACCTCTCCCTGAGCAGCGTGACACGTGACCACAAGCTGGTGGCATTCT
GGGCGCCATTCTTGCTTCTCCACCTTGGCAGGCCAGACAACATCACCGCCTATGCGCTGC
AGGACAACCAGCTCTGGTTGCGCCACCTGCAGATTCTTGTCGTCCAAGTTCTTGGAGCCG
GGTATGTCGTCTACAAGCGTCTTATTGTTGGTGGAGAGAAGACGATTCTCCTGCTGGCCA
CTGTCTTGATGTTCATGGTTGGCCTCGTCAAGTATTGTGAGAGGACTTTTGCACTGAAGC
GCGGCGACTTCAGCAGCATCCGGAGCTATGTCAAGGAGCTACCGGGTAAGCAACTCCGTT
GGTACAGAGGTTACTTGCAGAGTGAGGATCATTACAACTCCAATGATGAATTCCTTCTGC
AGCGCGCCCACTCCCTATTCCACATCTGCAAGCGTGGGATAGTAGACTCGGTGATCAATG
TGGATATGGATAAAACCGAGGCTGAAATCACAAGAAAATTAATCAACCAGATCAGGAATC
CACAACAGCCCATGGTCATGTGGAAGGTGATGGAGATGGAGTTGTCCCTGTTGTATGATA
TTCTCTACACCAAAGCAGCCGTGATCCACACATGGATTGGCTACTTAATCCGAGCCATGA
CACCGGTTGCCATCGTCTCGTCCTTCCTTCTGTTCCATTTTAGTGATAGCAAAGATGGCC
AGAATGTGGTTGACATCACTGTCACTTATATCTTGTTGGGTGGTGCCCTCATGATGGAGA
TGACATCCCTGCTGAGCGCACTAGGGTCGAGTTGGGCTCTTGCTTTCCTGTGTGCCATTC
CATGGAGCTCACTTCGGCATGCAGTTTTATGTGCTGGAAGATGGCACCGGCTCCGCCGAG
CAGTCGTGACCCTTCGCCAGGTTGTCATGGCAATGACCGGAGGTTTCCTAGGAAGATCAA
GGAAGTGGTCAGGCACCATAGGTCAGTTCAACATGCTCTACTTCCGTGCTGCACAGATCC
ATGCAACGAACCGACGGTTCGGCACGCTAGCTAAGAAGCTGGGGTGTGAGGATTGGTGGG
ACAGCACTTGTTACTCACACAGTATCAAGATTCCCAATACGGTAAAGGAACGGGCAGTGA
AAATGGTCTCGAAGCGTGCTATCAACACCCTGGGCTTGCTCAGGCATAGGTGGGGCGAGC
TGGCACTAGATAAAAAGAAGTATCCTAAGCTGGTAGGAGATCTGGAGGAATGGGAGGGTG
TTGACTTCCACGAGAGCATCATCATTTGGCACATCGCCACCGATCTCATCCTCTGTGGGA
GAAACAGGTCCAGTAACGACTCAACAAAAAAGAAAGAAGTTGAACGTGTCCGTTCAATCA
GGGCAATGTCAAATTACCTCATGTTCCTCCTTGTGACTCGCCCTGACATGGTTCCTGGCC
TTCCCCAGAACTGGTTGTACCAACGAACCTGCGATAACCTCGACAAAATATGCAAAGAGA
ATCGTGTGCAACTCATTTCTTCCGGTGGCAGGGCTTACAACATTGTGTTCATGGTTCTCA
TGAAGTTGATCCGGGGCAACAATAACAATAGCACAACATCTTATGGGCTTGAGCAGACCA
ACGAACTTGCCAAAATCCTACTTGGGATGAAGGTATCAGGCAAATTCGATCCTTCAGTTC
CTCGCCTCACATATGCACATGGGATCGCTAAGACAGTGTTAGGTTGGAAGGGTGAAGATC
AAATTGAAGGAATGCAAGATCCAAGTGAAGGGTATTGCATTGACTTATGGACGGATTTTC
TCATCTATGCAGCCAACCGGTGCAACAGGGAGTCGCATGCCAAAAAACTCAACACTGGGG
GCGAGATCAAAACCGTCGTTTGCCAAAAGGGGGAACACATATACCAAACTAAAGAAAATT
AA