Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0141400-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:2826150:2830476:1 gene:Os04g0141400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Concanavalin A-like lectin/glucanase domain containing protein. (Os04t0141400-01)
Sequence

ATGGACATCTCTCACCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCC
TTCTCGCTCGACGATGCTCCCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCT
CCACCACCACCACCACCATTCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGC
CTAGAAGACCTCCGATTCGAGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACC
TGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGG
GACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACC
CCGGACAACGTGGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGC
GTCCCCCCCAACCCCAGCGGCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCC
GGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAA
CGGCCGAGGCCGGCCGGAGACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATT
AACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGAC
AATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGT
GCTGCCCCTGTTCAGGTGAGTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAG
GTGGCCGTGGGATTTTCTACGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCA
TGGTCGTTCAACTCCACTCTTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAG
AAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGG
TCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGA
GGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAG
AATAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATG
GGCCGTCATGTTGCGATTAAGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAG
GACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTT
GTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTTCATGTGCTGGTGTAGGGAG
AAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCAC
CTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATT
TGCGCAGCTCTGGTTCACCTCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATC
AAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTG
TCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACG
GGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCG
TGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTG
ATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTC
ATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAA
GCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCC
TCAAGTAAAATTGGTAACTAA

Peptide Sequence

PEP ID

Os04t0141400-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:2826150:2830476:1 gene:Os04g0141400 transcript:Os04t0141400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Concanavalin A-like lectin/glucanase domain containing protein. (Os04t0141400-01)
Sequence

MDISHLLLRFFLLLLLLLLAFSLDDAPHHHCTEAAATTLPPPPPPPFSFKFDFSNTYTYR
LEDLRFEGTAAVHGATVDLTCNVAQCTTGRMSYGRAVPLWDRATNEVASFATEFAFKIVT
PDNVARGDGMAFFLSSYPSRVPPNPSGQSFGLIAGDADHAGDGPDRFIAVEFDTYDDTFE
RPRPAGDHIGIDVSSVADSINTTSLNFSRNGAMRASITFDNVTRMLVATVQFTDQTTASR
AAPVQVSAKLGDPRALLPSEVAVGFSTANGATFQLDQILSWSFNSTLASPHPVTKGHHKK
KGAAGKFAIVGAPIFLLLVWSILSWWKWRSSSRDIDKRTGGVRQFKYNELAAATNQFSSE
NRLIGAGPFGEGYKGFFKEMGRHVAIKKISKESRSEGSNKDFYDEVKTISSAKHKNLVEL
VGWCVKRRWNMFDFMCWCREKAHTIFLVYEFVDNSNLRVHLHEKEAVLPWTTRYKIVKDI
CAALVHLHHERRPFVLHRNIKPNNILLDKEFNAKLADFGLSRTADKVGKARYLDPECKKT
GKFKRSSDVYSFGIVLLEIACKKDENSFAKVWSRYLEKSLMQVADDRLRGEFDERQMERV
IILGLWCCQPNIDMRPTVQQAMDFLESDGPLPELAEPETSSSKIGN

Transcript Sequence

Transcript ID

Os04t0141400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:2826150:2830476:1 gene:Os04g0141400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Concanavalin A-like lectin/glucanase domain containing protein. (Os04t0141400-01)
Sequence

GCTTGCATCGTTACCAATTCCACCTTCACTCGACCACTCCAACAAAACATGGACATCTCT
CACCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTCTCGCTCGAC
GATGCTCCCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCA
CCACCATTCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAAGACCTC
CGATTCGAGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCC
CAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGGGACAGAGCCACC
AACGAGGTGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACCCCGGACAACGTG
GCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAAC
CCCAGCGGCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCCGGCGACGGCCCG
GACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCG
GCCGGAGACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATTAACACGACGAGC
TTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGG
ATGCTGGTCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGTGCTGCCCCTGTT
CAGGTGAGTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAGGTGGCCGTGGGA
TTTTCTACGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCATGGTCGTTCAAC
TCCACTCTTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAGAAAGGGGCAGCA
GGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCA
TGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGAGGTGTTAGGCAG
TTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAATAGGCTGATT
GGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTT
GCGATTAAGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAGGACTTCTATGAC
GAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGC
GTGAAGCGTAGATGGAACATGTTTGATTTCATGTGCTGGTGTAGGGAGAAGGCCCATACC
ATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAG
GAGGCTGTGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTG
GTTCACCTCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAAC
ATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCT
GACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAG
CGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGAT
GAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCT
GATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGG
TTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTC
CTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATT
GGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGA
CTTAGTTAATAAATGCTTGGATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCA
AGTTATTGTATCTTCTACATCCATTTATGTTTCTAATCAGTTGTGTC