Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0132300-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:2019241:2026428:1 gene:Os04g0132300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cePP protein. (Os04t0132300-01)
Sequence

TCGAGCGGCGGCGGCGCGGCGGCGGCGGTGGACCCGGAGGCGGCGACGGAGCTGGTGCGG
AAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACACC
CAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGCAT
TTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGATTC
TTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGTGGCATGCACAGGAGGAGAGA
TTAATAAAACTACCAGAAGAGGAGGAAATCAGATATTCTGAAGCAGTAAGACATTTCGAG
TTTGACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCTCA
AGCTACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAATT
GCATGGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAATG
GACCAACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAGGA
TGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGCTA
ACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACCAA
GGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGGGG
CAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTAGT
GAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACTAT
CAACTCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGAAT
TCTCTGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTAAG
GATTTCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGACT
CGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGGTG
AATCTAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCATAG

Peptide Sequence

PEP ID

Os04t0132300-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:2019241:2026428:1 gene:Os04g0132300 transcript:Os04t0132300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cePP protein. (Os04t0132300-01)
Sequence

SSGGGAAAAVDPEAATELVRKGATLLLLDVPQRTLLGVDTQVFSVGPKFKGIKMVPPGPH
FLYYCSPNRHANEFAPTVGFFLTTHPSEVIVRKWHAQEERLIKLPEEEEIRYSEAVRHFE
FDSQLGPYNLDSFGDWKQLSSYLPQSVIERLEPIGGEITIAWESSWMDKAPQTDMERRLM
DQLKDGKFAKNAPVQSERRGCYYTTIPASIKHSNISGDELTALNLDKTCLLESVLAKNYQ
GQEDLLLGELQFAFIAFMMGQSLEAFMQWKALVSLLLSCSEAPLHTRTNLFVKFIRAIYY
QLKHGFQHTQDNRSGEEMGNSLFLDEAWFSRDIFLYRLSKDFFAVILEATVVDGDLLSWT
RKLKSLLETTFGWDLDNNTVNLIDEDDEFAPVVVEMDGS

Transcript Sequence

Transcript ID

Os04t0132300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:2019241:2026428:1 gene:Os04g0132300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to cePP protein. (Os04t0132300-01)
Sequence

TGTCGAGCGGCGGCGGCGCGGCGGCGGCGGTGGACCCGGAGGCGGCGACGGAGCTGGTGC
GGAAGGGCGCCACGCTCCTCCTCCTCGACGTGCCCCAGCGCACCCTCCTCGGCGTCGACA
CCCAGGTGTTCTCCGTCGGGCCCAAGTTCAAGGGGATCAAGATGGTGCCTCCGGGGCCGC
ATTTCCTCTACTACTGCTCCCCCAACAGGCACGCAAATGAGTTCGCACCTACTGTCGGAT
TCTTTCTTACTACTCACCCATCTGAGGTGATTGTTCGGAAGTGGCATGCACAGGAGGAGA
GATTAATAAAACTACCAGAAGAGGAGGAAATCAGATATTCTGAAGCAGTAAGACATTTCG
AGTTTGACAGTCAGCTTGGACCATATAATTTGGATTCATTTGGAGATTGGAAACAACTCT
CAAGCTACTTGCCACAAAGTGTCATTGAACGTCTTGAGCCAATTGGTGGAGAAATTACAA
TTGCATGGGAGTCATCATGGATGGATAAAGCTCCGCAAACAGACATGGAGAGACGTTTAA
TGGACCAACTAAAAGATGGAAAATTTGCAAAGAATGCTCCTGTGCAGTCTGAGCGGAGAG
GATGCTACTATACAACTATCCCTGCTTCAATTAAGCATAGTAACATCTCTGGGGATGAGC
TAACTGCATTAAATCTGGACAAAACATGCTTGCTGGAGAGTGTTTTGGCCAAGAATTACC
AAGGCCAAGAGGATTTACTCTTGGGAGAGCTGCAGTTTGCTTTCATAGCATTTATGATGG
GGCAGTCACTGGAGGCTTTTATGCAATGGAAAGCATTAGTTAGTCTTCTTTTGAGCTGTA
GTGAAGCTCCTCTTCATACAAGGACTAACTTGTTTGTAAAGTTTATTAGGGCAATTTACT
ATCAACTCAAGCATGGCTTTCAGCACACACAGGATAATAGAAGTGGTGAGGAAATGGGGA
ATTCTCTGTTCTTAGATGAAGCATGGTTTTCAAGAGACATATTTCTCTATCGTCTTTCTA
AGGATTTCTTTGCGGTGATACTTGAAGCTACAGTTGTTGATGGTGACCTTCTGTCATGGA
CTCGAAAACTAAAATCACTTCTGGAGACCACATTTGGATGGGATCTTGACAACAATACGG
TGAATCTAATTGATGAAGATGATGAGTTTGCTCCTGTGGTCGTGGAAATGGATGGGTCAT
AGACTCAGGTGGACTTTTGAAGCCATATTCAGCTGGCTACTTGATCAGTGATGGAGATGC
ATACAAGATTACAAGTAGGGCTTTCTTGGCAGTATGTATCCTGGTTTCCTAAATTCCTGT
TTGTAAATATACGAAGAATAATTTCTCTTTGCACTAAGCGGTCTATCTTGTACTAGTACG
CTATTTACCGAGCCTTTTATCTTCTGCAGCGAACGGCAGTTTTCTCTATGGTTTGTTCTA
GTACTTCC