Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0129900-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:1874562:1876811:-1 gene:Os04g0129900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0103I21.1 protein. (Os04t0129900-01)
Sequence

GCAGCAGGGGCAGAGCAGGAGGAAATGGAGGAGGAGGACGTGAAGGGCGGCATCGCGAGG
AGCGCCATGGCGGCGTCGTACAACGACCAGATCCGGCCGCTGCTGGACGCCGTGGACCGG
CTGCGGCAGCTGAACGTGAGCCAGGAGGGCATACAGCTCCCGACCATCGTGGTGGTCGGG
GACCAGTCGAGCGGCAAGTCCAGCGTGCTGGAGTCGCTGGCCGGCATCAGCCTCCCGCGC
GGGCAGGGCATCTGCACCCGCGTGCCCCTGGTGATGCGGCTGCAGGACGCCGGCGACGAC
GACGAGCCTGCGCTGCGGCTCGAGTACAGCGGCGGCCGCGTGGTGGCTACCTCCGAGGCC
GAGGTCGCCGACGCCATCAACGCCGCCACCGCCGAGATCGCCGGGTGCGGCAAGGGCATC
TCCAACGCGCCCATCACCCTGGTGGTGCGCAAGAAGGGCGTGCCCGACCTCACCCTCGTC
GACCTGCCGGGCATCACCCGCGTGCCCGTGAAGGGGCAGCCGGAAGACATCTACGACCAG
ATCGCTGGCATCATCAAGGCGTACATCGCGCCCAGGGAGAGCATCATCCTCAACGTGCTC
TCCGCCACCGTCGACTTCCCGACGTGCGAGTCCATCCGCATGTCGCAGCAGGTGGACCGC
ACCGGCAACCGCACGCTGGCCGTCGTCACCAAGTCCGACAAGGCCCCCGAGGGCCTGCTC
GAGAAGGTCACCGTGGACGACGTGCGCATCGGCCTGGGCTACGTCTGCGTCCGGAACCGC
ATCGGCGACGAGACTTACAAGGAGGCCCGGGAGGCGGAGGCGCGGCTGTTCGCGGAGCAC
CCTCTGCTCTCCAGGATCGACAAGTCCATGGTGGGCGTCCCGACGCTGGCGCGGAGGCTG
ACGCAGATCCAGGCGAGAATCATCGCCCGGTCCCTCCCCGACATCGTCAAGCAGATCAAC
GACAAGCTCAGCCGCAGCAGCGACGAGCTCGGCCAGATGCCGCCGGAGCTCTGCACCGTG
GCAGACGCGGTGAGGGAATTCTTCCACATCGTCAATCAGATGCGCGCGTCGCTGGAGAAG
GTGCTCGTCAGGGGAGAGTTCGACGAGTACCCCAACGACCGCCACCACCACGGCACGGCG
CGCCTCGCCAAGATGCTCGAGGGCTTCGCGCGCAGGCTGCCGGCGGCGGCCGCGACCGAC
GGCGAGCCGTTCCTGGTGGAGGAGATGCGGGTGCTCAAGGAGACCAAGGGCATCAACCTC
CCCAACTTCATGCCGAGGTCGGCGCTCCACGTTCTGCTCAACCGGAAGGTGAAGAGCATC
GCGCAAGTCCCGCACGATCTCGTCAGGCAGGTGTGGGACTACGTGGAGGACCTGGTGCTC
AAGGAGCTGCAGCGCCACTCGCGCAGCTACCCGCAGGTGCAGCCGTCGTGCCGCCCCGCC
GTGCAGAGCCTCATGGACAAGGCGCGAGAGCGGTCGGCGCGGTACGTGAACGAGCTCATC
GACATGGAGATGGTGGCCAACTACACGGCGAACCCCGAGTACATCAAGACCTGGACCAGC
ATGATGGATGGCCAGAGCAGGCTCCGCGAGGCCCTGGAGGACCGCTCCAAGCCAGTGGCG
AAGCTTCGCTCCTTCTCCAAGCCCACGGCGGTCGCCCTCCCGGGGTTCGGAGAGACCGAC
GTGTCGCACCTCCACCAGCTGCCGCCGGAGCAGGTGGAGCTCGCCATGCAGGCCTTCGAC
CTCAAGGCGCGACTCGCCGCGTACTGGAACAGCGTCGTGCTCCGCGTCATCGACGGCTTG
GCCCTGCACGTCCTCTACAGCATCAAGCGCCTCGCTGAGAAGGATCTCGAGGATGAGCTC
GCTGCTCAGGTCATGGGCAATAACATGGACGGAGTGGAGCGGATGCTGGTGCCCACACCC
GCCGCCGCCGCCAAGCGTGACTGTCTCAAGAAAAGCATCAAACTGCTCCGGGAATCCAGG
GAAGTCGTCGCCAATATCATGGACAGATTAACGCGGCAAGCACCGACCATGTCTGATAAC
TACTACTCCACCTAG

Peptide Sequence

PEP ID

Os04t0129900-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:1874562:1876811:-1 gene:Os04g0129900 transcript:Os04t0129900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0103I21.1 protein. (Os04t0129900-01)
Sequence

AAGAEQEEMEEEDVKGGIARSAMAASYNDQIRPLLDAVDRLRQLNVSQEGIQLPTIVVVG
DQSSGKSSVLESLAGISLPRGQGICTRVPLVMRLQDAGDDDEPALRLEYSGGRVVATSEA
EVADAINAATAEIAGCGKGISNAPITLVVRKKGVPDLTLVDLPGITRVPVKGQPEDIYDQ
IAGIIKAYIAPRESIILNVLSATVDFPTCESIRMSQQVDRTGNRTLAVVTKSDKAPEGLL
EKVTVDDVRIGLGYVCVRNRIGDETYKEAREAEARLFAEHPLLSRIDKSMVGVPTLARRL
TQIQARIIARSLPDIVKQINDKLSRSSDELGQMPPELCTVADAVREFFHIVNQMRASLEK
VLVRGEFDEYPNDRHHHGTARLAKMLEGFARRLPAAAATDGEPFLVEEMRVLKETKGINL
PNFMPRSALHVLLNRKVKSIAQVPHDLVRQVWDYVEDLVLKELQRHSRSYPQVQPSCRPA
VQSLMDKARERSARYVNELIDMEMVANYTANPEYIKTWTSMMDGQSRLREALEDRSKPVA
KLRSFSKPTAVALPGFGETDVSHLHQLPPEQVELAMQAFDLKARLAAYWNSVVLRVIDGL
ALHVLYSIKRLAEKDLEDELAAQVMGNNMDGVERMLVPTPAAAAKRDCLKKSIKLLRESR
EVVANIMDRLTRQAPTMSDNYYST

Transcript Sequence

Transcript ID

Os04t0129900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:1874562:1876811:-1 gene:Os04g0129900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to OSIGBa0103I21.1 protein. (Os04t0129900-01)
Sequence

AGCAGCAGGGGCAGAGCAGGAGGAAATGGAGGAGGAGGACGTGAAGGGCGGCATCGCGAG
GAGCGCCATGGCGGCGTCGTACAACGACCAGATCCGGCCGCTGCTGGACGCCGTGGACCG
GCTGCGGCAGCTGAACGTGAGCCAGGAGGGCATACAGCTCCCGACCATCGTGGTGGTCGG
GGACCAGTCGAGCGGCAAGTCCAGCGTGCTGGAGTCGCTGGCCGGCATCAGCCTCCCGCG
CGGGCAGGGCATCTGCACCCGCGTGCCCCTGGTGATGCGGCTGCAGGACGCCGGCGACGA
CGACGAGCCTGCGCTGCGGCTCGAGTACAGCGGCGGCCGCGTGGTGGCTACCTCCGAGGC
CGAGGTCGCCGACGCCATCAACGCCGCCACCGCCGAGATCGCCGGGTGCGGCAAGGGCAT
CTCCAACGCGCCCATCACCCTGGTGGTGCGCAAGAAGGGCGTGCCCGACCTCACCCTCGT
CGACCTGCCGGGCATCACCCGCGTGCCCGTGAAGGGGCAGCCGGAAGACATCTACGACCA
GATCGCTGGCATCATCAAGGCGTACATCGCGCCCAGGGAGAGCATCATCCTCAACGTGCT
CTCCGCCACCGTCGACTTCCCGACGTGCGAGTCCATCCGCATGTCGCAGCAGGTGGACCG
CACCGGCAACCGCACGCTGGCCGTCGTCACCAAGTCCGACAAGGCCCCCGAGGGCCTGCT
CGAGAAGGTCACCGTGGACGACGTGCGCATCGGCCTGGGCTACGTCTGCGTCCGGAACCG
CATCGGCGACGAGACTTACAAGGAGGCCCGGGAGGCGGAGGCGCGGCTGTTCGCGGAGCA
CCCTCTGCTCTCCAGGATCGACAAGTCCATGGTGGGCGTCCCGACGCTGGCGCGGAGGCT
GACGCAGATCCAGGCGAGAATCATCGCCCGGTCCCTCCCCGACATCGTCAAGCAGATCAA
CGACAAGCTCAGCCGCAGCAGCGACGAGCTCGGCCAGATGCCGCCGGAGCTCTGCACCGT
GGCAGACGCGGTGAGGGAATTCTTCCACATCGTCAATCAGATGCGCGCGTCGCTGGAGAA
GGTGCTCGTCAGGGGAGAGTTCGACGAGTACCCCAACGACCGCCACCACCACGGCACGGC
GCGCCTCGCCAAGATGCTCGAGGGCTTCGCGCGCAGGCTGCCGGCGGCGGCCGCGACCGA
CGGCGAGCCGTTCCTGGTGGAGGAGATGCGGGTGCTCAAGGAGACCAAGGGCATCAACCT
CCCCAACTTCATGCCGAGGTCGGCGCTCCACGTTCTGCTCAACCGGAAGGTGAAGAGCAT
CGCGCAAGTCCCGCACGATCTCGTCAGGCAGGTGTGGGACTACGTGGAGGACCTGGTGCT
CAAGGAGCTGCAGCGCCACTCGCGCAGCTACCCGCAGGTGCAGCCGTCGTGCCGCCCCGC
CGTGCAGAGCCTCATGGACAAGGCGCGAGAGCGGTCGGCGCGGTACGTGAACGAGCTCAT
CGACATGGAGATGGTGGCCAACTACACGGCGAACCCCGAGTACATCAAGACCTGGACCAG
CATGATGGATGGCCAGAGCAGGCTCCGCGAGGCCCTGGAGGACCGCTCCAAGCCAGTGGC
GAAGCTTCGCTCCTTCTCCAAGCCCACGGCGGTCGCCCTCCCGGGGTTCGGAGAGACCGA
CGTGTCGCACCTCCACCAGCTGCCGCCGGAGCAGGTGGAGCTCGCCATGCAGGCCTTCGA
CCTCAAGGCGCGACTCGCCGCGTACTGGAACAGCGTCGTGCTCCGCGTCATCGACGGCTT
GGCCCTGCACGTCCTCTACAGCATCAAGCGCCTCGCTGAGAAGGATCTCGAGGATGAGCT
CGCTGCTCAGGTCATGGGCAATAACATGGACGGAGTGGAGCGGATGCTGGTGCCCACACC
CGCCGCCGCCGCCAAGCGTGACTGTCTCAAGAAAAGCATCAAACTGCTCCGGGAATCCAG
GGAAGTCGTCGCCAATATCATGGACAGATTAACGCGGCAAGCACCGACCATGTCTGATAA
CTACTACTCCACCTAGTACTCCACTTCGCGTGTAGCTGCCACGCATAATAATACTCTCCA
TGAGACATTCCCTCC