Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0129300-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:1843006:1848257:1 gene:Os04g0129300 gene_biotype:protein_coding transcript_biotype:protein_coding description:YT521-B-like protein family protein. (Os04t0129300-01)
Sequence

ATGAAGGAACCTTCCGATCCGCCCATGTCAGCGTTATCGCACACAGAAGGTGATTCTTCC
GGCTTCACAAGAAACAACGATAGGAATGATGATGCAGTTGGTGGGGAAGATTCGACTTCT
TCATATCAGCCATGTAACAGTATGAAATGCAAAGATGGTACCCAAATTATGTCTCTCGCA
AATGAGGATGTATCAAACCTGGCATCGGATTGTCAAGAGCCGCCTTCAGAATCCAACCAT
GCTATTTCCCATGGGTCAAATACAGATTCTAAGGAAGAAATGTCATCGGGAAGTGGGTAT
CGTAGGCAGCAGTCTTGCTTTTCTTCATCAACCTGTTCTTGGAGAAGTTCTTCTGAAGTA
GAATCAGTGTCAAGTACTCCAGACGGGTCAGGAGATGTAGTTGGGAACATGAGCGTCAGA
AGCAAAACCTTTGAGCGAAGGCCAGATCACATTGCTTCATATCCTTCTGCTAGTCCTGAC
ATAAGAAGGTTGTATGCAGCAGAAGGTAAAGCTGATTTTACCTTAGATTATCATTCAGAA
GAACGCTGGTCCAGAAGATCCAATCAATCTACTGCCTTTCGAACCAGCAATGGTCAATCT
ATTGAACACCACAGTGAGATAGTTGACATACCTAGACAGGCCAATTCCATGGATGAGACT
ACTTCCTCTTCAAGTCAATGGAGTTTTGACAATTGGGGACCTTCACTGCCAAGAGGGATG
CAGTATGGTGATGAGATCCCTTCTCTGTCTAGTCAGAACTATGGTGCTAGAATCCCCTCG
CTTTCAAGTAGACAAAGTTATGGTGATGAGATTCCGTCACTATCTCGCAATTGTAACTAC
GCGAGTAGACAAAGTTATGGTGATGAGATTCCATCGCTTTCTTCTCGCCATTGTAACTCG
TTCTCAAGTAGACAAAGTTATGGTGATGAGATTCCATCACTTTCTCGCCATTGTAACGCA
CGCTCAAGTAGACAAAATTACGGTGATGAGATTCCATCGCTGTCTAACTCTGACTATCAG
TGCTACCAAGATAGGATACCTTTGCATCATCGTCAATGGTGCCATGATGCTGAGGCACAT
CCACAGCTAAACTACGGGCGAGGTGCTTCTCATGGCAATCGTTACTCAAGAGACAGTTTT
GTCAGTAGTATTGCTACTAATCAGAGGTTCAAGATGGGCACAGGCAAACATACTGTCACA
AGATCTGATCATCATAGGACTATTAAGAACGATAATGTATGCAAACATTCTGATGATACA
TTGGAGCAAGTTCGTGGTCCCCGTGCAAACAAATTGGAAAATGCAACAAGATCCAAGATA
CAGGAAGATATCAGAAGTCCTTTGGTCCGTAGGGATCAGTTTAACAGACCAGACTTTATA
GTTGAGTATGAACAAGCCAAGTTCTTTATGATAAAGTCATATAGTGAAGATGATATTCAT
AAAGGTATCAAATACAATGTTTGGGCAAGTACACCACATGGGAACAATAAGCTGGATGCA
GCTTTTCGTGAAGCTCAGATTTTAATTAAGGAAAAGGGCAAAAAGTGCCCTGTCTTCCTA
TTCTTTTCGGTTAATTCCAGTGGCCAGTTTGTAGGATTGGCTGAGATATTAGGCCCTGTT
GATTTCAAGAAGACCATGGACTTTTGGAAACTAGATAGATGGAATGGCTTTTTCCCTGTA
ACCTGGCACATTATAAAGGACATTCCGAATAGGCTCTTCAAACATATAACTCTTGAAAAT
AATGACAACAGAATTGTTACTTTCAGCAGGGACACTCAGGAGATTGGCCTACTCCAGGGT
CTGAAAATGTTGAAAATTTTCAAGGATTATGACCAGGAAACGTCACTTCTGGACGATTTT
AATTTTTATGAAGAAAAGGAAAGTGCACGATGTGCCAAAAAGGGAATAAATGCAGAGTCG
ACACATGAAGCTAGACTATTGTTTTTTGGAACAGGAGCTAGACACTCTGATGACTTCAAA
TCAATGGAAAATTTAGAGGCAAGCATGGAGAATACAATTTTATATTAA

Peptide Sequence

PEP ID

Os04t0129300-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:1843006:1848257:1 gene:Os04g0129300 transcript:Os04t0129300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:YT521-B-like protein family protein. (Os04t0129300-01)
Sequence

MKEPSDPPMSALSHTEGDSSGFTRNNDRNDDAVGGEDSTSSYQPCNSMKCKDGTQIMSLA
NEDVSNLASDCQEPPSESNHAISHGSNTDSKEEMSSGSGYRRQQSCFSSSTCSWRSSSEV
ESVSSTPDGSGDVVGNMSVRSKTFERRPDHIASYPSASPDIRRLYAAEGKADFTLDYHSE
ERWSRRSNQSTAFRTSNGQSIEHHSEIVDIPRQANSMDETTSSSSQWSFDNWGPSLPRGM
QYGDEIPSLSSQNYGARIPSLSSRQSYGDEIPSLSRNCNYASRQSYGDEIPSLSSRHCNS
FSSRQSYGDEIPSLSRHCNARSSRQNYGDEIPSLSNSDYQCYQDRIPLHHRQWCHDAEAH
PQLNYGRGASHGNRYSRDSFVSSIATNQRFKMGTGKHTVTRSDHHRTIKNDNVCKHSDDT
LEQVRGPRANKLENATRSKIQEDIRSPLVRRDQFNRPDFIVEYEQAKFFMIKSYSEDDIH
KGIKYNVWASTPHGNNKLDAAFREAQILIKEKGKKCPVFLFFSVNSSGQFVGLAEILGPV
DFKKTMDFWKLDRWNGFFPVTWHIIKDIPNRLFKHITLENNDNRIVTFSRDTQEIGLLQG
LKMLKIFKDYDQETSLLDDFNFYEEKESARCAKKGINAESTHEARLLFFGTGARHSDDFK
SMENLEASMENTILY

Transcript Sequence

Transcript ID

Os04t0129300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:1843006:1848257:1 gene:Os04g0129300 gene_biotype:protein_coding transcript_biotype:protein_coding description:YT521-B-like protein family protein. (Os04t0129300-01)
Sequence

AAAGAGAAGAAAACTAGCCCAGACCCCTCCTCACACCAGGCGACTCCCCGTCGCCGCCGC
CGCATCGCCGCCTCCGCATCGCCGCCGTCTCGGAGCGTCTCCTCAGCAACCCACCGTTGA
GGCTCCAGGTAGATGAAGGAACCTTCCGATCCGCCCATGTCAGCGTTATCGCACACAGAA
GGTGATTCTTCCGGCTTCACAAGAAACAACGATAGGAATGATGATGCAGTTGGTGGGGAA
GATTCGACTTCTTCATATCAGCCATGTAACAGTATGAAATGCAAAGATGGTACCCAAATT
ATGTCTCTCGCAAATGAGGATGTATCAAACCTGGCATCGGATTGTCAAGAGCCGCCTTCA
GAATCCAACCATGCTATTTCCCATGGGTCAAATACAGATTCTAAGGAAGAAATGTCATCG
GGAAGTGGGTATCGTAGGCAGCAGTCTTGCTTTTCTTCATCAACCTGTTCTTGGAGAAGT
TCTTCTGAAGTAGAATCAGTGTCAAGTACTCCAGACGGGTCAGGAGATGTAGTTGGGAAC
ATGAGCGTCAGAAGCAAAACCTTTGAGCGAAGGCCAGATCACATTGCTTCATATCCTTCT
GCTAGTCCTGACATAAGAAGGTTGTATGCAGCAGAAGGTAAAGCTGATTTTACCTTAGAT
TATCATTCAGAAGAACGCTGGTCCAGAAGATCCAATCAATCTACTGCCTTTCGAACCAGC
AATGGTCAATCTATTGAACACCACAGTGAGATAGTTGACATACCTAGACAGGCCAATTCC
ATGGATGAGACTACTTCCTCTTCAAGTCAATGGAGTTTTGACAATTGGGGACCTTCACTG
CCAAGAGGGATGCAGTATGGTGATGAGATCCCTTCTCTGTCTAGTCAGAACTATGGTGCT
AGAATCCCCTCGCTTTCAAGTAGACAAAGTTATGGTGATGAGATTCCGTCACTATCTCGC
AATTGTAACTACGCGAGTAGACAAAGTTATGGTGATGAGATTCCATCGCTTTCTTCTCGC
CATTGTAACTCGTTCTCAAGTAGACAAAGTTATGGTGATGAGATTCCATCACTTTCTCGC
CATTGTAACGCACGCTCAAGTAGACAAAATTACGGTGATGAGATTCCATCGCTGTCTAAC
TCTGACTATCAGTGCTACCAAGATAGGATACCTTTGCATCATCGTCAATGGTGCCATGAT
GCTGAGGCACATCCACAGCTAAACTACGGGCGAGGTGCTTCTCATGGCAATCGTTACTCA
AGAGACAGTTTTGTCAGTAGTATTGCTACTAATCAGAGGTTCAAGATGGGCACAGGCAAA
CATACTGTCACAAGATCTGATCATCATAGGACTATTAAGAACGATAATGTATGCAAACAT
TCTGATGATACATTGGAGCAAGTTCGTGGTCCCCGTGCAAACAAATTGGAAAATGCAACA
AGATCCAAGATACAGGAAGATATCAGAAGTCCTTTGGTCCGTAGGGATCAGTTTAACAGA
CCAGACTTTATAGTTGAGTATGAACAAGCCAAGTTCTTTATGATAAAGTCATATAGTGAA
GATGATATTCATAAAGGTATCAAATACAATGTTTGGGCAAGTACACCACATGGGAACAAT
AAGCTGGATGCAGCTTTTCGTGAAGCTCAGATTTTAATTAAGGAAAAGGGCAAAAAGTGC
CCTGTCTTCCTATTCTTTTCGGTTAATTCCAGTGGCCAGTTTGTAGGATTGGCTGAGATA
TTAGGCCCTGTTGATTTCAAGAAGACCATGGACTTTTGGAAACTAGATAGATGGAATGGC
TTTTTCCCTGTAACCTGGCACATTATAAAGGACATTCCGAATAGGCTCTTCAAACATATA
ACTCTTGAAAATAATGACAACAGAATTGTTACTTTCAGCAGGGACACTCAGGAGATTGGC
CTACTCCAGGGTCTGAAAATGTTGAAAATTTTCAAGGATTATGACCAGGAAACGTCACTT
CTGGACGATTTTAATTTTTATGAAGAAAAGGAAAGTGCACGATGTGCCAAAAAGGGAATA
AATGCAGAGTCGACACATGAAGCTAGACTATTGTTTTTTGGAACAGGAGCTAGACACTCT
GATGACTTCAAATCAATGGAAAATTTAGAGGCAAGCATGGAGAATACAATTTTATATTAA
TCCAGATCGTTATGCCGTGCAATTGAAATAAGAAGCTTGATTGGTCAGTGAAGAAGTTGT
AGTCTTGGCACTTGCAAAACCATTTTTGGTCCAGCAAGGAAAGGCAAGATTAATTGGGTG
TTTGTATAGTGCATATGTTCCCTAAAGTATTTAACTGGTTGCAAACTTACATGGACTAGT
TTATCTGTATTATTAAGTTGTACTACTTGATTACTTGTAAGTGGTTGATGGTTTCTTCCT
TTCTTTTGTTGCCAATAACGATTAATCAGCTGGTTGTTTGTC