Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0118700-00
CDS Infomation	cds chromosome:IRGSP-1.0:4:1110678:1113347:1 gene:Os04g0118700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0118700-00)
Sequence	ATGGCCATGGCCGCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACG CACCCACCTCCCACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCC GCCCTCCGCGCGCTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCG GCGCTCCCGCCCGCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCC ATCCACGCCGCCGCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAAC GCGCTGCTCACCGCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGC TCCATCTCCGACTCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGC CTCTTCCGCCGCTGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCAC CCGCTCACTTCCTTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCC GCCGCCGCCGTTCGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTC CATGGCCACCAGCGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTC GTCGCCGACGCGCAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACG TGGAACACCATGGTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACG CTCTACGACATGGTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTC CCGGCGTGCTCGCGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATC AAGGACGACGAGCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCC ACGCACGAGCAGGTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAG CAGCTCGGGATGTGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAG GCGCTTCGTCTGTTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACC ATGGCCAGCGTGCTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTG CACGGGTACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATG GACATGTACGCGCGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGAC CTCCCTGACGTCGTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTC GCCGACGCGTTCCAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCG AACGCCATCACCCTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGG GGGAAGGAGATCCACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGG AGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTC GACCGGCTGCCGCGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATG CACGGGCTCGGCGGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCG AGGCCCAACGAGGTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTG GACCGTGGGCTGCAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCG GACATCCTCGCCTGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTAC GCCATGGTGACCTCGATGGAGACCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTC GGCGCGTGCCGGCTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTG GAGCTGGAGCCGGAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCC GGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAG GAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAG TCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATG GTGGCGCGCGGGTACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGAC AAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGG GCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCAT GAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGA AGGTTTCACCATTTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAG

Peptide Sequence

PEP ID	Os04t0118700-00
PEP Infomation	pep chromosome:IRGSP-1.0:4:1110678:1113347:1 gene:Os04g0118700 transcript:Os04t0118700-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0118700-00)
Sequence	MAMAAAAATSPPPPPPPPPTHPPPTSATVRSLTAAGNHAAALRALSSITMASPQQQLDHS ALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFG SISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAA AAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVT WNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVI KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE ALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALM DMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVP NAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVF DRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMV DRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTML GACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAK EPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGD KAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVR RFHHFRNGQCSCGDYW

Transcript Sequence

Transcript ID	Os04t0118700-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:1110678:1113347:1 gene:Os04g0118700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0118700-00)
Sequence	TCCACCCAACCAGCCACTGACTGAAGCTTCACCATCCCCATCCCTCCCATGGCCATGGCC GCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACGCACCCACCTCCC ACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCCGCCCTCCGCGCG CTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCGGCGCTCCCGCCC GCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCCATCCACGCCGCC GCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAACGCGCTGCTCACC GCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGCTCCATCTCCGAC TCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGCCTCTTCCGCCGC TGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCACCCGCTCACTTCC TTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCCGCCGCCGCCGTT CGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTCCATGGCCACCAG CGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTCGTCGCCGACGCG CAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACGTGGAACACCATG GTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACGCTCTACGACATG GTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTCCCGGCGTGCTCG CGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATCAAGGACGACGAG CTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCACGCACGAGCAG GTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAGCAGCTCGGGATG TGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAGGCGCTTCGTCTG TTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTG CTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTGCACGGGTACGTG GTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATGTACGCG CGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACGTC GTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTCGCCGACGCGTTC CAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCGAACGCCATCACC CTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGGGGGAAGGAGATC CACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGGAGCGCGCTGGTG GACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTCGACCGGCTGCCG CGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATGCACGGGCTCGGC GGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCGAGGCCCAACGAG GTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTGGACCGTGGGCTG CAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCGGACATCCTCGCC TGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTACGCCATGGTGACC TCGATGGAGACCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTCGGCGCGTGCCGG CTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTGGAGCTGGAGCCG GAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACT CGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGC AGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAGTCGGCGCACCCG GCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGG TACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTG CTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGC GCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCGGCCAAG TTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTCACCAT TTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAGTGAAGTACTAGTCTCTCAAAT TAATGATGAATTATATATAGCATCTAATAC