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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0118500-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:1100312:1102268:-1 gene:Os04g0118500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (DlPar13). (Os04t0118500-01)
Sequence

ATGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCAC
GAGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATCTCCGCTACC
ACGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGC
GCCAACTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGCCGTGGCGGC
GACCTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATGCGACATTTGCT
CTCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTG
CGCACTGCTTAA

Peptide Sequence

PEP ID

Os04t0118500-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:1100312:1102268:-1 gene:Os04g0118500 transcript:Os04t0118500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (DlPar13). (Os04t0118500-01)
Sequence

MASSATETETVRALHILIKHEGSRRKASWKDPDGRVISATTRADAAARLADLRDQILSGR
ANFADLAARHSDCSSARRGGDLGTFGRRQMQKPFEDATFALKVGEMSDTVDTDSGVHIIL
RTA

Transcript Sequence

Transcript ID

Os04t0118500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:1100312:1102268:-1 gene:Os04g0118500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (DlPar13). (Os04t0118500-01)
Sequence

GAAAAGCGTATTCGCAGAAAGCGTATTGGTGAGGCGGAGGAGTAGAGGAGGAGATCGAGA
TGGCGTCGTCGGCGACGGAGACGGAGACGGTGAGGGCGTTGCACATCCTGATCAAGCACG
AGGGCTCCCGCCGCAAGGCCTCCTGGAAGGATCCCGACGGCCGCGTCATCTCCGCTACCA
CGCGCGCCGACGCCGCCGCGCGCCTCGCCGACCTCCGCGACCAGATCCTCTCCGGCCGCG
CCAACTTCGCCGACCTCGCCGCCCGCCACTCCGACTGCTCCTCCGCGCGCCGTGGCGGCG
ACCTGGGCACTTTTGGGAGGAGGCAGATGCAGAAACCCTTCGAAGATGCGACATTTGCTC
TCAAGGTTGGTGAGATGAGTGACACTGTGGACACTGACAGTGGTGTTCACATCATCCTGC
GCACTGCTTAAGATGCTGATATCGATCGTCAGCTGGTTGGCTTCCAAATGTTATTTTCTG
GTAGCCTAAAACTTCAAATCAAAATGAACCCTGTAACGAATATGATATGTTCCGCGACCC
GCTTTTGTTTCGACATTTGAGCACATGGTATGGCATGTTTCCGTGATGAACATTTTAATC
T