Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0112100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:692896:695278:-1 gene:Os04g0112100 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os04t0112100-01)
Sequence

ATGCCGATTGGAGCAATTTCGACGGTTGGGCCGGCGATTTCGCCGGGCATCAAGATCGCC
GAAATCGCGGAATCCTTTGTGGCGAGGAAGTACAGACGCTTGAGAGATTACAGAAAGGAC
GTTGCACAGCTGGTGGGTGAAGTGGGGAAGATCGCAGTGGCCGTGGACACGGTGGAGGAA
CAGGAACAGTTCATGAGCGACCGTCGGATCGTGGGGCAACTGAGTGAGCTGATGGACGCC
ATCCACGAGGCTGAGGACATCTTGGACGCCGTCGACTACAGAGACAGTATCTGGGCGAGG
AAGCACAAGGTCAGGCAGGTTATCCATTCTATAGTTGAACAAGCTAAGCGGATAGTCGGA
ATAGACGGCGCGTTGAACCGGCTGGACAAGTCGATGAATGACCTGCCACGGATGCAGCAG
AACCAGCGGGATCTTGTCCAGCTGTCAAATTTCCGGTCATCACAAGGAGGAGGAGATGGG
GGTGCGTCCGCGTCGAGGCCAAGATCGGCCACGGGCCTATTGCCGGACGGCAAACTCTAC
GGTTACAAGGAGGAGTACGATCGGCTGGTGTCGGCCTTGCTGTACGATCCTCCCCGGCGG
CCTGGTGGCAATGGCAATGGCGGCGGTCAAGTCGTGGCGGTCGTCGGCGACGGCGGCGTT
GGCAAGACTGCGCTTGCTCAGCACGCGCTGAGGCACGTGGACGTTCAAGCAAGGTTTGAT
CATGTGATCTGGGCGAGCGTCCCACACAAGTACAGGAACAAGGACCTCTTGGCTGAGATC
TGGATGTCCGGACCGGGTGCTACTGCTACTGCGGCTACACACAGGTGCGCCGACCAGATG
AGCTTTGGTGCCCTTCAGGCGGAGTTCGTCAGGCTGGTGTCTCTGTCATCCCAGAGGTAC
CTGCTCGTCCTCGACGATGTCTGCAACGATGAGTCGGACGACGACGATCATCAGCGGAGC
AGGAAGGAATGGGAGGATGTCCTTGCCCCCTTCAAACAAGGGGAACGAGGGAACACATGA

Peptide Sequence

PEP ID

Os04t0112100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:692896:695278:-1 gene:Os04g0112100 transcript:Os04t0112100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os04t0112100-01)
Sequence

MPIGAISTVGPAISPGIKIAEIAESFVARKYRRLRDYRKDVAQLVGEVGKIAVAVDTVEE
QEQFMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKVRQVIHSIVEQAKRIVG
IDGALNRLDKSMNDLPRMQQNQRDLVQLSNFRSSQGGGDGGASASRPRSATGLLPDGKLY
GYKEEYDRLVSALLYDPPRRPGGNGNGGGQVVAVVGDGGVGKTALAQHALRHVDVQARFD
HVIWASVPHKYRNKDLLAEIWMSGPGATATAATHRCADQMSFGALQAEFVRLVSLSSQRY
LLVLDDVCNDESDDDDHQRSRKEWEDVLAPFKQGERGNT

Transcript Sequence

Transcript ID

Os04t0112100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:692896:695278:-1 gene:Os04g0112100 gene_biotype:protein_coding transcript_biotype:protein_coding description:NB-ARC domain containing protein. (Os04t0112100-01)
Sequence

GGCTGGCTCCTATCTTTTTGACTTGTTTTGAGTTTTGACGACCCCACGGGGCCGACCTGC
ACACTTTGGACGGTAGGCGCTCATCCCCTTCACTTTGCTCCTCCACCATTTATTTACTTG
TTCATTTGCTAATTAAGGACTCTTCTTTAATTTTGTCGCCTTTGATCTCGTCGGCGATGC
TGGTGCCATTGGAAGCTAGGATCGATCATATGTCATAGCAGGCTGCAGCTAGATCTCCCA
CAGTAGTAGTGGTCGTGTGGTGTGATTGATCTTGCACGAGCATCACCAGCCAGGCTGTAC
TGCATCAATCATATATCGATCGCTGATTGCAGATTGGCCTTGTGTGTCGACAGAGAGGGA
GAGAGGCGGCGGCTAGGCATGCCGATTGGAGCAATTTCGACGGTTGGGCCGGCGATTTCG
CCGGGCATCAAGATCGCCGAAATCGCGGAATCCTTTGTGGCGAGGAAGTACAGACGCTTG
AGAGATTACAGAAAGGACGTTGCACAGCTGGTGGGTGAAGTGGGGAAGATCGCAGTGGCC
GTGGACACGGTGGAGGAACAGGAACAGTTCATGAGCGACCGTCGGATCGTGGGGCAACTG
AGTGAGCTGATGGACGCCATCCACGAGGCTGAGGACATCTTGGACGCCGTCGACTACAGA
GACAGTATCTGGGCGAGGAAGCACAAGGTCAGGCAGGTTATCCATTCTATAGTTGAACAA
GCTAAGCGGATAGTCGGAATAGACGGCGCGTTGAACCGGCTGGACAAGTCGATGAATGAC
CTGCCACGGATGCAGCAGAACCAGCGGGATCTTGTCCAGCTGTCAAATTTCCGGTCATCA
CAAGGAGGAGGAGATGGGGGTGCGTCCGCGTCGAGGCCAAGATCGGCCACGGGCCTATTG
CCGGACGGCAAACTCTACGGTTACAAGGAGGAGTACGATCGGCTGGTGTCGGCCTTGCTG
TACGATCCTCCCCGGCGGCCTGGTGGCAATGGCAATGGCGGCGGTCAAGTCGTGGCGGTC
GTCGGCGACGGCGGCGTTGGCAAGACTGCGCTTGCTCAGCACGCGCTGAGGCACGTGGAC
GTTCAAGCAAGGTTTGATCATGTGATCTGGGCGAGCGTCCCACACAAGTACAGGAACAAG
GACCTCTTGGCTGAGATCTGGATGTCCGGACCGGGTGCTACTGCTACTGCGGCTACACAC
AGGTGCGCCGACCAGATGAGCTTTGGTGCCCTTCAGGCGGAGTTCGTCAGGCTGGTGTCT
CTGTCATCCCAGAGGTACCTGCTCGTCCTCGACGATGTCTGCAACGATGAGTCGGACGAC
GACGATCATCAGCGGAGCAGGAAGGAATGGGAGGATGTCCTTGCCCCCTTCAAACAAGGG
GAACGAGGGAACACATGATTTCTTTTACCTTGGATATCCGTGCGGATGCTGTCCATCTGC
TGCATGAAGATTTCCTGCATCCGGATCACATAAAGGCAATCGGTTCAATCAGAATCGAGC
ACTACACATGGTCGACTGAGCCAAACCTCAACCTCCTTGCTTCTGTTAGGAGCCTGTCGT
TAACCCGATGTCCTGTGACAGACAGGAGTTTGAGCATGTGCCTGCATAAACTGCAGTCCC
TCGAGAGACTAGAGATATCTGATTGCCCTGAACTTCATGACTTCCCCGATGATGCCATGC
CTATGATGGCATCCTTGAAATCCCTCGAGTTTAACGGATGCCATCCTCTTCTTATGAAGA
AGCTACAAGGCAGGACTGGCGCTGCCTGGGAAAGGATTCGCTCCATCCAGCGACTAGAAA
TCGTTTAAACTCAAGGTGGGAATGGTCTTAAGCAAGTGGTACTAGGTATCAAGGGGAAAG
GCAAGACCAACAGCATAGCGCAAGTGTCACTGCTCGGTGGTCATCACGCTTAACGACCTC
TGCTGAATTTGGTTCTACGGGACTTGTTAGATGGGGAAAAATATAAAGTGCAAACCACAT
ATACAGTGACAACTTAGAAACTAATATTAGCATAAAAATGAATGTATGAGATTTATCCAT
GTCACCTAGAGTGGCAGTAAAAAAAATTTCATGAATAACTCTCAGATTTAACCATGGGTT
AAAAATTTTATTCGAGATGACGTGGACGAATA