Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0110500-02
CDS Infomation	cds chromosome:IRGSP-1.0:4:613789:616346:-1 gene:Os04g0110500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0110500-02)
Sequence	ATGCACCCACTCACCCTCTCCTCCACCGCCCTCCTCCGCCTCATCAAGTCGCTCTCGCCG GCGGTGCGTAGGGCCCACCTGTCGGCGTCCTCTATCCACTGCCTCCTCCTCAAGGCCGGC CTCCTCCACGTCGGCGCGCACCTCCCGACGGCGCTCCTCTCCGCGTATGCCGCCCTCGGC AGCCCGGATCACGCGCGCAGGCTGTTCGACGAAATGCCCGAGCAAGGCCTTGTCCCGCGA ACCGCCATGGCCCGGGCGCACGTCGCGTCTGGGCAGGCGGCTCAAGCGATCGCCGTATTC GGGGACATGGTGGCGGATGGTGTCTTCCCGGACAATGTCGCCCTGGCAGTCGCGCTTGGG GCATGCCATGGCGCTGGCTCTTGGACGGCTAGGAGGAATCCAGGCAAGAAGATCCATGCT CTCATCGTGACCAGCGGCATTGAGCCAGATGTGTTTGTCTCCACCGAGCTGATAAGGGTC TACGGTGAGTGTGGCAAGCTGGCGGTTTCTAGGAGGGTGTTCGATGACATGCCGTCGAGG AGTACCATTACATGGAACGCCATGTTGCATCAGTATGCCAGGCACGGGAAAGTTGACACG GCTTATGAGCTGTTCCTCGCAATGCCGAGGAGAGATGTTGTGTCCTGGAACACAGTGATG GCCGGGTACTGTGTTGCTGGCCGGTGCAGGGAGGCACTTGGCTTGTTCCGTCAGATGGTG TCGCCGTCATCGTGTGCGGTGCATCCTAATGTGCCTACGATGAGCACTATCCTCGGTGCT TGTGCCGGCGCGGGTTGTTTGGAGACCGGGATTTGGGTCCATGCATATATTGAGAGGAAC AGGATGAATGATGATGGCTATCTGGATCGGTGCCTGATAGACATGTACTGCAAATGCGGA AGCATCGATAATGCCCTACAGGTGTTTGAGAAGGCACCTAGGAAGAGGGACCTGTTCTCA TGGACAACCGTGATCTGTGGGCTGGCAATGCACGGCCGCGCCACTGATGCTTTGAGAATG TTTGACATGATGCAGGATAATGGCATATGCCCGGATGATGTCACGCTTGTTGGGGTCCTA AATGCTTGTGCACATGGAGGTTTGGTAGACGAAGGTCTTGGCTACTTCTACTCCATGGAG GCAAAATTTAGAATCACACCCAAGATTGAACACTATGGTTGCATGATTGATCTTCTTGGC CGCGTTGGGCGACTGCAGGAAGCATATAGCATGATAAGAACAATGCCAATGGATCCCAAC ACGGTTATTTGGGGTGCATTCTTGAGCGCGTGCAAAGTTCATGGCAATATGGAACTCGGC AAGATTGCGGCAGAAGAGCTCACCAGGTTGGATCCAGATGACCCTTGGGGGAGAGTGATG CTGTCCAGCATGTACGCGAAAGCACAGGATTGGATTGGTCTTGCCCGGGAGAGGAGGGAG ATGAACAGCATGCAGGTGAAGAAGACTCCTGGGTGCAGCTCGATCGAGCTCAAAGGCGAG GTGCATGAGTTTGTTGCTGGTGGCAGTCAGCATCCTCAGTATGCTGAGATTTGCAGTGTA CTGCAAGATGTTGAAGCTCAAACAAATGTAGGTTGA

Peptide Sequence

PEP ID	Os04t0110500-02
PEP Infomation	pep chromosome:IRGSP-1.0:4:613789:616346:-1 gene:Os04g0110500 transcript:Os04t0110500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0110500-02)
Sequence	MHPLTLSSTALLRLIKSLSPAVRRAHLSASSIHCLLLKAGLLHVGAHLPTALLSAYAALG SPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALG ACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSR STITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMV SPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCG SIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVL NACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPN TVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERRE MNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVEAQTNVG

Transcript Sequence

Transcript ID	Os04t0110500-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:613789:616346:-1 gene:Os04g0110500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os04t0110500-02)
Sequence	AAAGGCCCAAAACACCCACACGCACGACTTCTTCGTCGGCGTCGCCGCGCCGCCGCGCCG CCGCCGCCGCCTCCGGCCGGCCGGCCGCACCTCCACCACCGCACAGCACCTCTCAGCTCT CACCCGCGGGGAGAAGGGAGGAACACGGAGAAGGCTCAGACTCGCCAATTTCATGGAGAT TGCATCTCGGCTGTGTTGATGCGTCGCCCATGCACCCACTCACCCTCTCCTCCACCGCCC TCCTCCGCCTCATCAAGTCGCTCTCGCCGGCGGTGCGTAGGGCCCACCTGTCGGCGTCCT CTATCCACTGCCTCCTCCTCAAGGCCGGCCTCCTCCACGTCGGCGCGCACCTCCCGACGG CGCTCCTCTCCGCGTATGCCGCCCTCGGCAGCCCGGATCACGCGCGCAGGCTGTTCGACG AAATGCCCGAGCAAGGCCTTGTCCCGCGAACCGCCATGGCCCGGGCGCACGTCGCGTCTG GGCAGGCGGCTCAAGCGATCGCCGTATTCGGGGACATGGTGGCGGATGGTGTCTTCCCGG ACAATGTCGCCCTGGCAGTCGCGCTTGGGGCATGCCATGGCGCTGGCTCTTGGACGGCTA GGAGGAATCCAGGCAAGAAGATCCATGCTCTCATCGTGACCAGCGGCATTGAGCCAGATG TGTTTGTCTCCACCGAGCTGATAAGGGTCTACGGTGAGTGTGGCAAGCTGGCGGTTTCTA GGAGGGTGTTCGATGACATGCCGTCGAGGAGTACCATTACATGGAACGCCATGTTGCATC AGTATGCCAGGCACGGGAAAGTTGACACGGCTTATGAGCTGTTCCTCGCAATGCCGAGGA GAGATGTTGTGTCCTGGAACACAGTGATGGCCGGGTACTGTGTTGCTGGCCGGTGCAGGG AGGCACTTGGCTTGTTCCGTCAGATGGTGTCGCCGTCATCGTGTGCGGTGCATCCTAATG TGCCTACGATGAGCACTATCCTCGGTGCTTGTGCCGGCGCGGGTTGTTTGGAGACCGGGA TTTGGGTCCATGCATATATTGAGAGGAACAGGATGAATGATGATGGCTATCTGGATCGGT GCCTGATAGACATGTACTGCAAATGCGGAAGCATCGATAATGCCCTACAGGTGTTTGAGA AGGCACCTAGGAAGAGGGACCTGTTCTCATGGACAACCGTGATCTGTGGGCTGGCAATGC ACGGCCGCGCCACTGATGCTTTGAGAATGTTTGACATGATGCAGGATAATGGCATATGCC CGGATGATGTCACGCTTGTTGGGGTCCTAAATGCTTGTGCACATGGAGGTTTGGTAGACG AAGGTCTTGGCTACTTCTACTCCATGGAGGCAAAATTTAGAATCACACCCAAGATTGAAC ACTATGGTTGCATGATTGATCTTCTTGGCCGCGTTGGGCGACTGCAGGAAGCATATAGCA TGATAAGAACAATGCCAATGGATCCCAACACGGTTATTTGGGGTGCATTCTTGAGCGCGT GCAAAGTTCATGGCAATATGGAACTCGGCAAGATTGCGGCAGAAGAGCTCACCAGGTTGG ATCCAGATGACCCTTGGGGGAGAGTGATGCTGTCCAGCATGTACGCGAAAGCACAGGATT GGATTGGTCTTGCCCGGGAGAGGAGGGAGATGAACAGCATGCAGGTGAAGAAGACTCCTG GGTGCAGCTCGATCGAGCTCAAAGGCGAGGTGCATGAGTTTGTTGCTGGTGGCAGTCAGC ATCCTCAGTATGCTGAGATTTGCAGTGTACTGCAAGATGTTGAAGCTCAAACAAATGTAG GTTGAGACACACAGCCTTCTGTTGAGCTTCTTGTGCTGCCAGGATTTCAGCACAGGTGCA ATTTCCTCTGAGCCTTCACGAGAACGCTCCTTGCTTTGCACGTCGGCATGTGGAGAACCG AAGAGAAGATTAGCTAATTAGTCAGTTAAAATGCGAAGAACTGACAATTTTGCTCTGAAT CCAATATAAACTTCAATATGCTGATTTTATGAGCTAGGGTTCAGAGTTTACACGGCCTAG AGGGTGGTGTCAGCTTGATTGGCATAAGAGGAGACAATCTAGTCGGATAAAGACCTTTGA GGGAGATGGAATAGATTAATACATCTTCATCGCTTGATTGCTAGTAATGGATACATGACA CCCTTTTATAGGGCATGGCTTTGACTGGACAGCTGATACATGGAATAATAATCTCTGCTC AACAGCTGATGAAATTTCTTTTAACTTCGTCAATTTGAAGCGACGAAAGAATGTTGAAGC TAGTTTACACATGCATTCAACCTTTTCCCGTGAAGGCATACTGAGCATTGCACTCAGGAA CCTCTTTCAGATTTTTTTAGTGTATTATTTACCCTTTTATGTGCTTTCCGTGCCTTAATG TTTGTCAGAGTGTTGATGGCATGGGCACAAGCACATTCTTTATTTGTTTTGTTTTCAAGG GTTAATTTGATCCATGCCACTGCAAATGTGGCAAATCAAAAAATATGCCACTACTATTGA CGTTATCTATTGGTGCCACTATAAATTCCTAAAATTGG