Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0107700-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:471138:472885:-1 gene:Os04g0107700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C1A, papain family protein. (Os04t0107700-01)
Sequence	ATGGCTTCCTCCCCGCCGTTTCGTCTACCTCTCGCCGTTGTGCTCCTACTCGCAATAATA TGTGTCCTTTTGGCTTCTCCTAGCTGCCATGCGGACGATCTCACCGCCACCATGACAAAC GAGCACGAGAAAGAGCATCAGCTGATGATGATGATGATGGACAGGTTCCATAGGTGGATG GCGACGCACAACCGGTCGTACGCCTCCGCCGACGAGAAGCTGCGGCGATTCGAGGTATAC CGGAGCAACATGGAGTTCATCGAGGCGACCAACCGGAACGGCAGCCTCACCTTCAAGCTC GGTGAAACGCCGTTCACCGACCTCACCCACGAGGAGTTCCTCGCGACCTACACCGGCGAC GTACGCCTTCCGCCGGAGCGGCGGGGGATGCAAGACGACTCCGACGAGGAGGATGCAGTG ATTACAACCAGTGCTGGGTACGTCGCCGGCGCCGGCGCCGGCAGGCGTACGGTTGCGGTG CCGGAGTCCGTGGACTGGAGAAAGGAGGGCGCGGTGACTCCGGCCAAGCATCAAGGCCAG TGCGCGGCGTGCTGGGCATTTGCAGCAGTGGCAGCCATAGAGAGCCTGCACAAGATCAAA GGAGGAGATCTGATATCTCTGTCGGAGCAAGAGCTGGTGGACTGTGACGATACTGGAGAG GCCACCTGCTCAAAGGGTTACAGCGACGACGCCTTCCTGTGGGTGAGCAAGAACAAGGGC ATCGCCAGCGACCTCATCTACCCGTACGTCGGCCACAAGGAGAGCTGCAAGAAGCAGCTG CTCGGCGTGCACAACGCCACCGTCAGAGGCGTCGTCACCTTACCTGAAAACAGGGAGGAC CTGATCATGGCGGCGGTGGCCAGGCAGCCGGTGGCCGTCGTGTTCGACGCCGGTGATCCC TTGTTCCAAAACTACAGGGGTAATGGTGTCTACAAGGGCGGCACGGGCTGCTCCACCAAC GTGAACCATGCCCTGACCATCGTCGGCTACGGGACGAACCATCCCGACACTGGGGAAAAC TATTGGATTGCCAAGAACTCGTACGGCAATCTGTGGGGCGACAATGGCTTCGTCTACTTG GCCAAGGACACAGCTGACCGCACAGGTGTCTGCGGCCTCGCCATATGGCCGACCTTTCCC ACCATTCGGTGA

Peptide Sequence

PEP ID	Os04t0107700-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:471138:472885:-1 gene:Os04g0107700 transcript:Os04t0107700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C1A, papain family protein. (Os04t0107700-01)
Sequence	MASSPPFRLPLAVVLLLAIICVLLASPSCHADDLTATMTNEHEKEHQLMMMMMDRFHRWM ATHNRSYASADEKLRRFEVYRSNMEFIEATNRNGSLTFKLGETPFTDLTHEEFLATYTGD VRLPPERRGMQDDSDEEDAVITTSAGYVAGAGAGRRTVAVPESVDWRKEGAVTPAKHQGQ CAACWAFAAVAAIESLHKIKGGDLISLSEQELVDCDDTGEATCSKGYSDDAFLWVSKNKG IASDLIYPYVGHKESCKKQLLGVHNATVRGVVTLPENREDLIMAAVARQPVAVVFDAGDP LFQNYRGNGVYKGGTGCSTNVNHALTIVGYGTNHPDTGENYWIAKNSYGNLWGDNGFVYL AKDTADRTGVCGLAIWPTFPTIR

Transcript Sequence

Transcript ID	Os04t0107700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:471138:472885:-1 gene:Os04g0107700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase C1A, papain family protein. (Os04t0107700-01)
Sequence	AACTACTAACAGGCAGCTGCCAGCCATGGCTTCCTCCCCGCCGTTTCGTCTACCTCTCGC CGTTGTGCTCCTACTCGCAATAATATGTGTCCTTTTGGCTTCTCCTAGCTGCCATGCGGA CGATCTCACCGCCACCATGACAAACGAGCACGAGAAAGAGCATCAGCTGATGATGATGAT GATGGACAGGTTCCATAGGTGGATGGCGACGCACAACCGGTCGTACGCCTCCGCCGACGA GAAGCTGCGGCGATTCGAGGTATACCGGAGCAACATGGAGTTCATCGAGGCGACCAACCG GAACGGCAGCCTCACCTTCAAGCTCGGTGAAACGCCGTTCACCGACCTCACCCACGAGGA GTTCCTCGCGACCTACACCGGCGACGTACGCCTTCCGCCGGAGCGGCGGGGGATGCAAGA CGACTCCGACGAGGAGGATGCAGTGATTACAACCAGTGCTGGGTACGTCGCCGGCGCCGG CGCCGGCAGGCGTACGGTTGCGGTGCCGGAGTCCGTGGACTGGAGAAAGGAGGGCGCGGT GACTCCGGCCAAGCATCAAGGCCAGTGCGCGGCGTGCTGGGCATTTGCAGCAGTGGCAGC CATAGAGAGCCTGCACAAGATCAAAGGAGGAGATCTGATATCTCTGTCGGAGCAAGAGCT GGTGGACTGTGACGATACTGGAGAGGCCACCTGCTCAAAGGGTTACAGCGACGACGCCTT CCTGTGGGTGAGCAAGAACAAGGGCATCGCCAGCGACCTCATCTACCCGTACGTCGGCCA CAAGGAGAGCTGCAAGAAGCAGCTGCTCGGCGTGCACAACGCCACCGTCAGAGGCGTCGT CACCTTACCTGAAAACAGGGAGGACCTGATCATGGCGGCGGTGGCCAGGCAGCCGGTGGC CGTCGTGTTCGACGCCGGTGATCCCTTGTTCCAAAACTACAGGGGTAATGGTGTCTACAA GGGCGGCACGGGCTGCTCCACCAACGTGAACCATGCCCTGACCATCGTCGGCTACGGGAC GAACCATCCCGACACTGGGGAAAACTATTGGATTGCCAAGAACTCGTACGGCAATCTGTG GGGCGACAATGGCTTCGTCTACTTGGCCAAGGACACAGCTGACCGCACAGGTGTCTGCGG CCTCGCCATATGGCCGACCTTTCCCACCATTCGGTGAAACCGGCCACACAGACGAAAAGT TCGTTGTACTAGTTTATGTCTGTGGCTCAGGCTGATCGTATCGATGGATCATGGTGGCAA TACTTGTAGCTGCATACATGTATATATGTGTCTATTTCACCCATCTATAGCTCCATCGTT TTTAAATTACTAGAATAAATAAAAGTCATGATGATCTCTCATCATGTGTGTTGTTTT