Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os04t0105100-01
CDS Infomation

cds chromosome:IRGSP-1.0:4:333801:337060:1 gene:Os04g0105100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0105100-01)
Sequence

ATGGATCAGCAGCTGCACCTGCAGGGGACTAGTACTGCTACAACTGTTCCATTGCAAGGT
GACCCTGCTTCTGATCACCACCCACATCTCTCAATCGACATACCACCAGCTGCAGCAAGC
ATGTCACCTGCACCGACACAAGCTGCTGCAGATATCACACCCACACCGACCACTTCGATT
TTGAGCACCAAAGCGAGCACACCTGCAGGTTCATGTTCCAGCAGAAGCACCAGCGTTGCC
CCAAAGCCGCAACGATCGTCATCCTTCATGCTGAGGCAGACTGTCAAGAGCCTCTTGCCA
GTGGGAAGCTTCAAGTCGTCAGTCAAGTTCTTCAACGCCAGAATTTCGAGGACATCGTCG
CTCCCGGTGACCGATGTCTCGCAGGAACAAGCCGATAAAACTTCGACTACTCATGCTGTT
GATAAAGCAGGTCACATGTACCGGTCACAGTCGCTTCCCATGAACATGAAGAAATTGAAT
AATGGAAAGAGCTTCAAGAGAATGAATTCACTCGGCGGTGTCTACCGCGTAGTTCCTTCG
ACACCATCAGTCCCCGTGACAAGCAGCAATGTCATCCCAGATATAGTCCCATCTGAACCA
GGTGATGAAGATGGAGAGGACATAGCAGAGGAAGAGGCAGTATGCAGGATCTGCATGGTT
GAGCTGTCAGAAGGGAGTGACACTCTGAAGCTGGAGTGTTCATGCAAGGGCGAGCTCGCT
CTAGCTCACAAGCACTGCGCCATGAAGTGGTTCACCATGAAAGGTACCAGGACATGCGAG
GTCTGCAAGGAAGATGTTCAGAACCTCCCTGTCACCCTTGTTCGTGTTCAGAGCATGCAG
CAGCCTGAGCTTCAGACCAACCCTGCCAACGCATCAAGATACGATCGCCTCAGGATGTGG
CAGGGAGCGCCAATCCTTGTGATCGTCAGCATCCTCGCCTACTTCTGCTTCTTGGAACAG
CTGCTGGTTGCCCGTGATGGTATTGCAGCGCTGGCAATATCGCTGCCCTTCTCATGTATC
CTTGGCCTCTTCTCATCCCTCACCACAACAAGCATGGTGGCAAGGAGATACGTGTGGATC
TATGCGACAATTCAGTTTCTGTTCGTCGTCTTCTTCACCCATCTCTTCTACAGATATCTC
CATTTGCAAGCGGTGATATCAATCATCCTGGCCACGTTTGCCGGGTTCGGCGTAGGGATG
ACCGGCAACTCCATCATCGTGGAGATTATACGGTGGAGGGCGGCGAGGGCGGCGGCGGCG
CCGCCGGCTCAAACCCGTCATCGTCGTCGTCGTCATGGTCGCAGGCAACAACAGCCACCA
CCTGCACAACCAGCTGCTTCTTCAGCTGCCGTCGCCGACGTTGAGAACCCACCTGTATAA

Peptide Sequence

PEP ID

Os04t0105100-01
PEP Infomation

pep chromosome:IRGSP-1.0:4:333801:337060:1 gene:Os04g0105100 transcript:Os04t0105100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0105100-01)
Sequence

MDQQLHLQGTSTATTVPLQGDPASDHHPHLSIDIPPAAASMSPAPTQAAADITPTPTTSI
LSTKASTPAGSCSSRSTSVAPKPQRSSSFMLRQTVKSLLPVGSFKSSVKFFNARISRTSS
LPVTDVSQEQADKTSTTHAVDKAGHMYRSQSLPMNMKKLNNGKSFKRMNSLGGVYRVVPS
TPSVPVTSSNVIPDIVPSEPGDEDGEDIAEEEAVCRICMVELSEGSDTLKLECSCKGELA
LAHKHCAMKWFTMKGTRTCEVCKEDVQNLPVTLVRVQSMQQPELQTNPANASRYDRLRMW
QGAPILVIVSILAYFCFLEQLLVARDGIAALAISLPFSCILGLFSSLTTTSMVARRYVWI
YATIQFLFVVFFTHLFYRYLHLQAVISIILATFAGFGVGMTGNSIIVEIIRWRAARAAAA
PPAQTRHRRRRHGRRQQQPPPAQPAASSAAVADVENPPV

Transcript Sequence

Transcript ID

Os04t0105100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:4:333801:337060:1 gene:Os04g0105100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0105100-01)
Sequence

GCTCTTCATTTTGCACTCCAGACTACAAACAAGCTAGCTAGGATCAACAACAACAACTCA
AACAATAATCTGCCGCCCGCCATGGATCAGCAGCTGCACCTGCAGGGGACTAGTACTGCT
ACAACTGTTCCATTGCAAGGTGACCCTGCTTCTGATCACCACCCACATCTCTCAATCGAC
ATACCACCAGCTGCAGCAAGCATGTCACCTGCACCGACACAAGCTGCTGCAGATATCACA
CCCACACCGACCACTTCGATTTTGAGCACCAAAGCGAGCACACCTGCAGGTTCATGTTCC
AGCAGAAGCACCAGCGTTGCCCCAAAGCCGCAACGATCGTCATCCTTCATGCTGAGGCAG
ACTGTCAAGAGCCTCTTGCCAGTGGGAAGCTTCAAGTCGTCAGTCAAGTTCTTCAACGCC
AGAATTTCGAGGACATCGTCGCTCCCGGTGACCGATGTCTCGCAGGAACAAGCCGATAAA
ACTTCGACTACTCATGCTGTTGATAAAGCAGGTCACATGTACCGGTCACAGTCGCTTCCC
ATGAACATGAAGAAATTGAATAATGGAAAGAGCTTCAAGAGAATGAATTCACTCGGCGGT
GTCTACCGCGTAGTTCCTTCGACACCATCAGTCCCCGTGACAAGCAGCAATGTCATCCCA
GATATAGTCCCATCTGAACCAGGTGATGAAGATGGAGAGGACATAGCAGAGGAAGAGGCA
GTATGCAGGATCTGCATGGTTGAGCTGTCAGAAGGGAGTGACACTCTGAAGCTGGAGTGT
TCATGCAAGGGCGAGCTCGCTCTAGCTCACAAGCACTGCGCCATGAAGTGGTTCACCATG
AAAGGTACCAGGACATGCGAGGTCTGCAAGGAAGATGTTCAGAACCTCCCTGTCACCCTT
GTTCGTGTTCAGAGCATGCAGCAGCCTGAGCTTCAGACCAACCCTGCCAACGCATCAAGA
TACGATCGCCTCAGGATGTGGCAGGGAGCGCCAATCCTTGTGATCGTCAGCATCCTCGCC
TACTTCTGCTTCTTGGAACAGCTGCTGGTTGCCCGTGATGGTATTGCAGCGCTGGCAATA
TCGCTGCCCTTCTCATGTATCCTTGGCCTCTTCTCATCCCTCACCACAACAAGCATGGTG
GCAAGGAGATACGTGTGGATCTATGCGACAATTCAGTTTCTGTTCGTCGTCTTCTTCACC
CATCTCTTCTACAGATATCTCCATTTGCAAGCGGTGATATCAATCATCCTGGCCACGTTT
GCCGGGTTCGGCGTAGGGATGACCGGCAACTCCATCATCGTGGAGATTATACGGTGGAGG
GCGGCGAGGGCGGCGGCGGCGCCGCCGGCTCAAACCCGTCATCGTCGTCGTCGTCATGGT
CGCAGGCAACAACAGCCACCACCTGCACAACCAGCTGCTTCTTCAGCTGCCGTCGCCGAC
GTTGAGAACCCACCTGTATAATACTCATCGATCGTTACCTGAAAGGAAGGTTGGAGGCCT
TGCAAACTGTATAAATTTATTTCAAACTAGGAAGTTAAGTTAATAAGTAGGCATGGAGTT
GATTTTTTTGCTCAGGATCGATGCATGGATGCATGTCAATTTTATACTATATTTTTTCAG
TTCTTTTTATTTTTTTTGGAGCTTGTGTGAAAGAATCAGTCTTAGTATAGTATATACTAG
TATAAAATGTGTCCTGGTGTACAAAGTATGTCAGACATGTATATCTGCTTGAAATCTTGT
ATTAGTATAAAACTCTTGAGATGCTCTGCTCTTGGCTTGCTGAAATTGTAAACCATGCAT
CCTCCAGAAATTAATCTTCATCTTCAG