Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os04t0101800-01
CDS Infomation	cds chromosome:IRGSP-1.0:4:121735:125238:-1 gene:Os04g0101800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOIL-SURFACE ROOTING 1 description:Similar to H0102C09.6 protein. (Os04t0101800-01)
Sequence	ATGGGGACGGGGTGGCGGAGGGCACTGTGCACGTCGGTCCGGCGAGATCCGGAGCAACAA GAGGTGAAGAGGCGAGGAGAGGCCCCAAGCCCCCGGTGTGGAGGAGGCAGCAGGCTGGGT GGCTTCTTCTCCGCCATCTCCAGCAGCCATAGCAGCAGTAATCCAGCAACAACGACGCCC ACCCTGCGATGCCGCACCAAACCAAAGCCACAGTCCAGCAGCAGCGACCACCAGCAGCAG CTTCCGTCGTCCGCGCCGGCGCCCAAGAAGAGGATGCCTCTGCTGCAGGCTCTCTCCGTG CCATCCTCGCCCAGATCCCCCTCCAGATTCGCCCTCCTCAAGGCCTCCATCCTGCCCAAC AAGAGCCGGTGCGGCGTGTGCTCCCACGGCGTGAAGACCGGCGCGGCGGCGGTGTTCACG GCGGAGTGCTCCCACTCCTTCCACTTCCCCTGCATCGCCGCCCACGCCCACGCCCTCGCC GCCGCCACCGCTCTCTCCTGCCCCGTCTGCGCCGCGCCATGGCGCCAGGCCCCCTTCATC AACAAGCGCACCACCACCACCGACGACCACAAGCGCAAGTCCTACGACGACGACGAGCCC CTCCTCGCGCCCAAGGCCGCCGCCGGCGCCTTCAACCCTATCCCCGAGGACGACGAGGAC GACGCCACCGAGTTCAGGGGCTTCTTCCCGGCGCGCCCCAGGAGCGGGCTGGCCGTCACC CTCGCCCCGGACGCCGCCCTCGTGTCCGCTGGGCGGAGGCACGGCAAGTACGTGGTGGCC GTGAGGGTGAAGGCGCCCGCCCTGCGCTCCTCGCCCTCCACGCGCGCCCCCATCGACCTC GTCACCGTCCTCGACGTCAGCCAGGGCATGATGGGCGACAAGCTTCACATGCTCAAGAGA GGCATGCGCCTCGTCATCGCCTCTCTCGGCCCCGCCGACCGCCTCGCCATCGTCGCCTTC TCCGGCGCCGCCAAGCGCCTCCTCCCGCTGCGCCGGATGACGCGCCAGGGCCAGCGCTCC GCCCGCCAGATCGTCGATCGCCTTGTCGTCTGCGCCGCCGCCCAGGGCCAGGAACAGCCG CAGGCCGTCTGCGTTGGCGACGCGCTGCGCAAGGCCACCAAGGTGCTCGAGGACCGCCGC GACCGCAACCCCGTCGCCACCGTCATGCTCCTCTCCGACACGCAGCAGCAGCAGCAGCAG CAGCAGGATGCGATCCGGCGCCCGCCAGCCGCCCCTCCGGCCACGCGATTCACGCACGTC GAGATCCCCATCGGGCCAGGGGAGGAGCCGGCCCGGTCGGCGCTGGTGGCGGAGGAGGAC GACGACCAGTTCTCGGAGCACGCCTTCGCGAAATGCCTGGGCGGCCTCGTCAGCGTGGTG ATGCAGGAGGTGCAGCTGGAGCTGGCGTTCCCGACGGGCGAGATCACGGCGGTGTACTCG TGCGGCCACGGGCAGCAGGCGGTGGCCCTTGGGGGCGGTGGCGGCGGCGCGGCGGTGAGT GTCTCCCTGGGCGAGATGTACGCGGAGGAAGAGCGGGAGCTGCTGGTGGAGCTGCGCGCG CCGCTGAGCCAGAGCCACCCACACTCGCTGTCCGTGCGGTGCAGCTACCGTGAGCCGGCG TCGCAGGAGACGGTGCGCGGCGCGGAGCAGCAGCTGGTGGTGCCGGCCCTCCACGGCGGG AGCTCGTCGCGGCGGCTGCACGACCTGTTCGTGGCGACACGGGCGGTGGCCGAGTCGCGG CGGCTGGCGGAGCTGAACGACTACGCGACGGCCATCCACCTGCTGTCGTCGGCGCGGGCG GTGGTGGTGCAGTCGGCGGAGCAGGGGCTGGTTGGCAGCCTGGACACGGAGCTGAGCGAC ATGCGGTGGCGGCGCGGGCAGTCGGCAGGCAGGCGGCGTGGCGGCGAGTCGGAGGAGACT CCGGTGGGGACGCCGCGGGCGCGGGGGGGAGAGCCGCTGACGCCGACGTCGGCGTGGCGC GCGGCGGAGCAGCTGGCCAAGGTGGCCATCATGCGCAAGTCCATGAACCGTGTCAGCGAT CTCCACGGTTTCGAGAACGCCAGATTCTGA

Peptide Sequence

PEP ID	Os04t0101800-01
PEP Infomation	pep chromosome:IRGSP-1.0:4:121735:125238:-1 gene:Os04g0101800 transcript:Os04t0101800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOIL-SURFACE ROOTING 1 description:Similar to H0102C09.6 protein. (Os04t0101800-01)
Sequence	MGTGWRRALCTSVRRDPEQQEVKRRGEAPSPRCGGGSRLGGFFSAISSSHSSSNPATTTP TLRCRTKPKPQSSSSDHQQQLPSSAPAPKKRMPLLQALSVPSSPRSPSRFALLKASILPN KSRCGVCSHGVKTGAAAVFTAECSHSFHFPCIAAHAHALAAATALSCPVCAAPWRQAPFI NKRTTTTDDHKRKSYDDDEPLLAPKAAAGAFNPIPEDDEDDATEFRGFFPARPRSGLAVT LAPDAALVSAGRRHGKYVVAVRVKAPALRSSPSTRAPIDLVTVLDVSQGMMGDKLHMLKR GMRLVIASLGPADRLAIVAFSGAAKRLLPLRRMTRQGQRSARQIVDRLVVCAAAQGQEQP QAVCVGDALRKATKVLEDRRDRNPVATVMLLSDTQQQQQQQQDAIRRPPAAPPATRFTHV EIPIGPGEEPARSALVAEEDDDQFSEHAFAKCLGGLVSVVMQEVQLELAFPTGEITAVYS CGHGQQAVALGGGGGGAAVSVSLGEMYAEEERELLVELRAPLSQSHPHSLSVRCSYREPA SQETVRGAEQQLVVPALHGGSSSRRLHDLFVATRAVAESRRLAELNDYATAIHLLSSARA VVVQSAEQGLVGSLDTELSDMRWRRGQSAGRRRGGESEETPVGTPRARGGEPLTPTSAWR AAEQLAKVAIMRKSMNRVSDLHGFENARF

Transcript Sequence

Transcript ID	Os04t0101800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:4:121735:125238:-1 gene:Os04g0101800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SOIL-SURFACE ROOTING 1 description:Similar to H0102C09.6 protein. (Os04t0101800-01)
Sequence	GCTTGGTTTGGTTCCTCTCTGCTTCTCTCTCTTTTCCTCCCTCCGGCGACCACCAGCATA CCATACCATCGCCGGCTTGCTTGCTTCCTTCCTTCCTTCCTTGGGGGAGAGAGAGAGTGT GTGTGTGATGGGGACGGGGTGGCGGAGGGCACTGTGCACGTCGGTCCGGCGAGATCCGGA GCAACAAGAGGTGAAGAGGCGAGGAGAGGCCCCAAGCCCCCGGTGTGGAGGAGGCAGCAG GCTGGGTGGCTTCTTCTCCGCCATCTCCAGCAGCCATAGCAGCAGTAATCCAGCAACAAC GACGCCCACCCTGCGATGCCGCACCAAACCAAAGCCACAGTCCAGCAGCAGCGACCACCA GCAGCAGCTTCCGTCGTCCGCGCCGGCGCCCAAGAAGAGGATGCCTCTGCTGCAGGCTCT CTCCGTGCCATCCTCGCCCAGATCCCCCTCCAGATTCGCCCTCCTCAAGGCCTCCATCCT GCCCAACAAGAGCCGGTGCGGCGTGTGCTCCCACGGCGTGAAGACCGGCGCGGCGGCGGT GTTCACGGCGGAGTGCTCCCACTCCTTCCACTTCCCCTGCATCGCCGCCCACGCCCACGC CCTCGCCGCCGCCACCGCTCTCTCCTGCCCCGTCTGCGCCGCGCCATGGCGCCAGGCCCC CTTCATCAACAAGCGCACCACCACCACCGACGACCACAAGCGCAAGTCCTACGACGACGA CGAGCCCCTCCTCGCGCCCAAGGCCGCCGCCGGCGCCTTCAACCCTATCCCCGAGGACGA CGAGGACGACGCCACCGAGTTCAGGGGCTTCTTCCCGGCGCGCCCCAGGAGCGGGCTGGC CGTCACCCTCGCCCCGGACGCCGCCCTCGTGTCCGCTGGGCGGAGGCACGGCAAGTACGT GGTGGCCGTGAGGGTGAAGGCGCCCGCCCTGCGCTCCTCGCCCTCCACGCGCGCCCCCAT CGACCTCGTCACCGTCCTCGACGTCAGCCAGGGCATGATGGGCGACAAGCTTCACATGCT CAAGAGAGGCATGCGCCTCGTCATCGCCTCTCTCGGCCCCGCCGACCGCCTCGCCATCGT CGCCTTCTCCGGCGCCGCCAAGCGCCTCCTCCCGCTGCGCCGGATGACGCGCCAGGGCCA GCGCTCCGCCCGCCAGATCGTCGATCGCCTTGTCGTCTGCGCCGCCGCCCAGGGCCAGGA ACAGCCGCAGGCCGTCTGCGTTGGCGACGCGCTGCGCAAGGCCACCAAGGTGCTCGAGGA CCGCCGCGACCGCAACCCCGTCGCCACCGTCATGCTCCTCTCCGACACGCAGCAGCAGCA GCAGCAGCAGCAGGATGCGATCCGGCGCCCGCCAGCCGCCCCTCCGGCCACGCGATTCAC GCACGTCGAGATCCCCATCGGGCCAGGGGAGGAGCCGGCCCGGTCGGCGCTGGTGGCGGA GGAGGACGACGACCAGTTCTCGGAGCACGCCTTCGCGAAATGCCTGGGCGGCCTCGTCAG CGTGGTGATGCAGGAGGTGCAGCTGGAGCTGGCGTTCCCGACGGGCGAGATCACGGCGGT GTACTCGTGCGGCCACGGGCAGCAGGCGGTGGCCCTTGGGGGCGGTGGCGGCGGCGCGGC GGTGAGTGTCTCCCTGGGCGAGATGTACGCGGAGGAAGAGCGGGAGCTGCTGGTGGAGCT GCGCGCGCCGCTGAGCCAGAGCCACCCACACTCGCTGTCCGTGCGGTGCAGCTACCGTGA GCCGGCGTCGCAGGAGACGGTGCGCGGCGCGGAGCAGCAGCTGGTGGTGCCGGCCCTCCA CGGCGGGAGCTCGTCGCGGCGGCTGCACGACCTGTTCGTGGCGACACGGGCGGTGGCCGA GTCGCGGCGGCTGGCGGAGCTGAACGACTACGCGACGGCCATCCACCTGCTGTCGTCGGC GCGGGCGGTGGTGGTGCAGTCGGCGGAGCAGGGGCTGGTTGGCAGCCTGGACACGGAGCT GAGCGACATGCGGTGGCGGCGCGGGCAGTCGGCAGGCAGGCGGCGTGGCGGCGAGTCGGA GGAGACTCCGGTGGGGACGCCGCGGGCGCGGGGGGGAGAGCCGCTGACGCCGACGTCGGC GTGGCGCGCGGCGGAGCAGCTGGCCAAGGTGGCCATCATGCGCAAGTCCATGAACCGTGT CAGCGATCTCCACGGTTTCGAGAACGCCAGATTCTGATTCTCATCATCTATCAATCTCAG CTCAGCTTGTAATCAATGATAATTTTCTTTTCTTTTTCATTTTCATTTTCATTTTCTTCT TATGTGAAATGAATCAACAAACACAAGATATGTCTCCACGACGAAGAAGAAAGAAGAAAG GCAGAATTAAGAAGAGGGAGGAGTCCCTGCCGGAGCGCGGCGGACGTAAATTACATCT