Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0860900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:36340143:36346548:1 gene:Os03g0860900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Thionin 30 description:WD40 repeat-like domain containing protein. (Os03t0860900-01)
Sequence

ATGGCGCGGAGCAATTGGGAGGCAGACAAGATGCTGGATGTGTACATCTACGACTACCTG
GTGAAGCGCAACATGCACAACACCGCTAAGGCCTTCATGACCGAGGGCAAGGTCGCCACC
GATCCCGTGGCCATCGATGCTCCTGGAGGCTTCCTCTTCGAATGGTGGTCCATCTTCTGG
GACATCTTCGATGCAAGAACAAGAGACAAACCACCACAGCCTCAGCCTCAGCCTCCTCCT
CCTATTCCGATAGACATCAAATCCAGGGAACAGCAGATGAGGCTCCAGCTACTGCAACAG
CAGCAGAATGCCCACCAGCAGCGAAGAGATCCCCCTCTCAATGCTGCTATGGATGCTCTC
AACTCTGATGTTTCTGCTGTCCTCGCTTCTAAAATGATGCAAGACCGAATGAGGAACCCC
AATCCCACCGATTCCGATGCTTCCCACCAACTCCTGGACGCTAACAGGATTGCTCTCCTC
AAACCAGCAACTAACCAAACTGGACAACTGGTTCAGGGTGCCTCGGTCAACATGTCAGCT
CTACAGCAGATCCACTCAAGAAACCAGCAACCTGACATGAAAGGTGATGCTGCCATGTCA
CAAAGATCAATGCCTACAGACCCTTCAACTTTGTATGGATCAGGAATGATGCAACCAAAA
TCTGGATTAGTTTCCACTGGATTAAATCAAGGTGTTGGTAGTGTACCACTGAAAGGCTGG
CCTCTTACAGTCCCAGGTATTGACCAACTCCGGTCAAATTTAGGTGTGCAGAAGCAGTTG
ATGGCATCTCCAAACCAATTTCAACTTTTATCGCCACAACAACAATTAATTGCTCAAGCA
CAATCACAGAATGACCTTGCTAGAATGGGTTCTCCAGCTCCATCTGGTTCACCAAAGGTT
CGACCAGATGAATCAGATTATATGATGAAGTTGAAGATGGCTCAAATGCAGCAGCCCTCA
GGTCACCGTCTTATGGAATTACAGCAGCAGCAGCAGCAATTGCAACAGAATACTAGAAAA
CGGAAACCAACCTCTTCCGGCGCAGCTAATAGTACAGGCACAGGAAATACTGTTGGCCCT
TCCCCACCCTCAACTCCTTCCACTCACACACCTGGTGGTGGGTTACCAGTGGCTAGCAAC
ATGAACATTGTACAAAAGAGTTCATTAATTTGCGGTGCAGATGGAACCAGTGGACTTGCT
TCATCCTCAAATCAAATGGATAATCTGGATAGTTTTGTTGATTTTGATGAAAACGTTGAT
TCATTTTTGTCAAATGATGATGGAGATGGGCGGGACATATTTGCTTCATTGAAGAAAGGG
TCCTCAGAGCAGGATTCCTTAAAGGGTCTCTCGTTGAGTGAGTTTGGTAATAACCGTACA
AGCAACAATAAGGTTGTTTGCTGTCACTTCTCCACAGATGGGAAATTGCTGGCTAGTGCT
GGCCATGAGAAAAAGGTCTTCCTCTGGAATATGGACAATCTTAACATGGATACTAAAATA
GAAGAACATACGAACTTTATTACAGATATAAGATTCAAACCGAATTCAACTCAGTTAGCT
ACATCATCTTCTGATGGAACTGTTCGACTATGGAATGCAATCGAACGAACTGGTGCTGTA
CAGACTTTTCATGGGCATAGTTCCCATGTAACCTCTGTAGATTTTCACCCGAAATCTACA
GAGGTTCTATGCTCTTGTGACGACAATGGAGAAATTTGTTTCTGGAAAATTGGTCAAAGT
AAAGTTTCACGTATCTCCAGGATGAAACAGGGTGGTACTGGTAGGGTCAGGTTTCAGCCT
CAAATTGGACAGCTCCTAGCTGTGGCAACTGGAAGCATTGTGAATATTGTTGATGTTGAA
AAGGAGGCAAGTTTGCACTCACTGCCTAAGGTTCATACCAATGAGGTAAACTGCATCTGT
TGGGATGAAAAGGGTGAACGTGTGGCATCTGTAAGTCAGGATACTGTGAAGGTTTGGTCG
GTAGCATCAGGCGCATGCATCCATGAGTTAAGATCTCATGGAAACCAATACCAGTCTTGC
ATATTTCATCCAAGATATCCGAATGTTCTGATAGTTGGTGGTTACCAGACGATGGAGCTA
TGGAGCTTGTCAGATAATCACAGAAACACGGTCCAGGCACATGAAGGCCTTATAGCTGCT
TTGGCGCACTCTCAGTTCACTGGGATGATAGCTTCTGCGAGCCATGACAGATCCGTGAAA
CTGTGGAAATGA

Peptide Sequence

PEP ID

Os03t0860900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:36340143:36346548:1 gene:Os03g0860900 transcript:Os03t0860900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Thionin 30 description:WD40 repeat-like domain containing protein. (Os03t0860900-01)
Sequence

MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVAIDAPGGFLFEWWSIFW
DIFDARTRDKPPQPQPQPPPPIPIDIKSREQQMRLQLLQQQQNAHQQRRDPPLNAAMDAL
NSDVSAVLASKMMQDRMRNPNPTDSDASHQLLDANRIALLKPATNQTGQLVQGASVNMSA
LQQIHSRNQQPDMKGDAAMSQRSMPTDPSTLYGSGMMQPKSGLVSTGLNQGVGSVPLKGW
PLTVPGIDQLRSNLGVQKQLMASPNQFQLLSPQQQLIAQAQSQNDLARMGSPAPSGSPKV
RPDESDYMMKLKMAQMQQPSGHRLMELQQQQQQLQQNTRKRKPTSSGAANSTGTGNTVGP
SPPSTPSTHTPGGGLPVASNMNIVQKSSLICGADGTSGLASSSNQMDNLDSFVDFDENVD
SFLSNDDGDGRDIFASLKKGSSEQDSLKGLSLSEFGNNRTSNNKVVCCHFSTDGKLLASA
GHEKKVFLWNMDNLNMDTKIEEHTNFITDIRFKPNSTQLATSSSDGTVRLWNAIERTGAV
QTFHGHSSHVTSVDFHPKSTEVLCSCDDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQP
QIGQLLAVATGSIVNIVDVEKEASLHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWS
VASGACIHELRSHGNQYQSCIFHPRYPNVLIVGGYQTMELWSLSDNHRNTVQAHEGLIAA
LAHSQFTGMIASASHDRSVKLWK

Transcript Sequence

Transcript ID

Os03t0860900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:36340143:36346548:1 gene:Os03g0860900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Thionin 30 description:WD40 repeat-like domain containing protein. (Os03t0860900-01)
Sequence

GCCTGGTTCCATTTCTTCCTCCTTTGTTGTTGGATTCCAGTTCCAGGCGAGGCGAGCGGC
AAATCCAAATCGGCACACGAGCGAGACTGCGAGTGCGAGCGCGAGCGCGAGCGCGAGCGA
TTCGATTGGAGTTGGAGACCATCTCGCCGCCGCCGCCGCCGCCGCCTCTTCTTACTGCTG
CTTGTAGATGGCGCGGAGCAATTGGGAGGCAGACAAGATGCTGGATGTGTACATCTACGA
CTACCTGGTGAAGCGCAACATGCACAACACCGCTAAGGCCTTCATGACCGAGGGCAAGGT
CGCCACCGATCCCGTGGCCATCGATGCTCCTGGAGGCTTCCTCTTCGAATGGTGGTCCAT
CTTCTGGGACATCTTCGATGCAAGAACAAGAGACAAACCACCACAGCCTCAGCCTCAGCC
TCCTCCTCCTATTCCGATAGACATCAAATCCAGGGAACAGCAGATGAGGCTCCAGCTACT
GCAACAGCAGCAGAATGCCCACCAGCAGCGAAGAGATCCCCCTCTCAATGCTGCTATGGA
TGCTCTCAACTCTGATGTTTCTGCTGTCCTCGCTTCTAAAATGATGCAAGACCGAATGAG
GAACCCCAATCCCACCGATTCCGATGCTTCCCACCAACTCCTGGACGCTAACAGGATTGC
TCTCCTCAAACCAGCAACTAACCAAACTGGACAACTGGTTCAGGGTGCCTCGGTCAACAT
GTCAGCTCTACAGCAGATCCACTCAAGAAACCAGCAACCTGACATGAAAGGTGATGCTGC
CATGTCACAAAGATCAATGCCTACAGACCCTTCAACTTTGTATGGATCAGGAATGATGCA
ACCAAAATCTGGATTAGTTTCCACTGGATTAAATCAAGGTGTTGGTAGTGTACCACTGAA
AGGCTGGCCTCTTACAGTCCCAGGTATTGACCAACTCCGGTCAAATTTAGGTGTGCAGAA
GCAGTTGATGGCATCTCCAAACCAATTTCAACTTTTATCGCCACAACAACAATTAATTGC
TCAAGCACAATCACAGAATGACCTTGCTAGAATGGGTTCTCCAGCTCCATCTGGTTCACC
AAAGGTTCGACCAGATGAATCAGATTATATGATGAAGTTGAAGATGGCTCAAATGCAGCA
GCCCTCAGGTCACCGTCTTATGGAATTACAGCAGCAGCAGCAGCAATTGCAACAGAATAC
TAGAAAACGGAAACCAACCTCTTCCGGCGCAGCTAATAGTACAGGCACAGGAAATACTGT
TGGCCCTTCCCCACCCTCAACTCCTTCCACTCACACACCTGGTGGTGGGTTACCAGTGGC
TAGCAACATGAACATTGTACAAAAGAGTTCATTAATTTGCGGTGCAGATGGAACCAGTGG
ACTTGCTTCATCCTCAAATCAAATGGATAATCTGGATAGTTTTGTTGATTTTGATGAAAA
CGTTGATTCATTTTTGTCAAATGATGATGGAGATGGGCGGGACATATTTGCTTCATTGAA
GAAAGGGTCCTCAGAGCAGGATTCCTTAAAGGGTCTCTCGTTGAGTGAGTTTGGTAATAA
CCGTACAAGCAACAATAAGGTTGTTTGCTGTCACTTCTCCACAGATGGGAAATTGCTGGC
TAGTGCTGGCCATGAGAAAAAGGTCTTCCTCTGGAATATGGACAATCTTAACATGGATAC
TAAAATAGAAGAACATACGAACTTTATTACAGATATAAGATTCAAACCGAATTCAACTCA
GTTAGCTACATCATCTTCTGATGGAACTGTTCGACTATGGAATGCAATCGAACGAACTGG
TGCTGTACAGACTTTTCATGGGCATAGTTCCCATGTAACCTCTGTAGATTTTCACCCGAA
ATCTACAGAGGTTCTATGCTCTTGTGACGACAATGGAGAAATTTGTTTCTGGAAAATTGG
TCAAAGTAAAGTTTCACGTATCTCCAGGATGAAACAGGGTGGTACTGGTAGGGTCAGGTT
TCAGCCTCAAATTGGACAGCTCCTAGCTGTGGCAACTGGAAGCATTGTGAATATTGTTGA
TGTTGAAAAGGAGGCAAGTTTGCACTCACTGCCTAAGGTTCATACCAATGAGGTAAACTG
CATCTGTTGGGATGAAAAGGGTGAACGTGTGGCATCTGTAAGTCAGGATACTGTGAAGGT
TTGGTCGGTAGCATCAGGCGCATGCATCCATGAGTTAAGATCTCATGGAAACCAATACCA
GTCTTGCATATTTCATCCAAGATATCCGAATGTTCTGATAGTTGGTGGTTACCAGACGAT
GGAGCTATGGAGCTTGTCAGATAATCACAGAAACACGGTCCAGGCACATGAAGGCCTTAT
AGCTGCTTTGGCGCACTCTCAGTTCACTGGGATGATAGCTTCTGCGAGCCATGACAGATC
CGTGAAACTGTGGAAATGAAGAAGGATTGGAGATGAAGAGGAGAAGGGGCCTCAGCGCGA
CGGCTGCCAGAATCTTAACTTGCATAGCTTCCCAGACGTGCGTACGTATAGAGTTTGTGT
TGTTTATTTTTGATTCGTTGGCTTCGTTACAGAAGGTAGCCCGTAATTTGTTATTATACT
AGTTTAGACAAATGAATGACTTTTTTTACTTTAGGGGTGAGGTGTACATGGTTGGGGCAA
AAATGTTGACAATACTAATCTATGTGGAACGTGCTGTGTAAATTAATAATTAATAGAAAG
AGCAATGGAATTTGAAGAGAAAACATGAATTATTCCATGTGTGTGTGTGTGTAGTGCAGT
GTATGTATATGGGATTTGAAAATGAATGGTAGCAAGAAAACAATTCGTTTC