Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0856000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:36103513:36105063:1 gene:Os03g0856000 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os03t0856000-01)
Sequence

ATGGAGTGTTGGGAGAAGAAGCCAAGGAATCTGGGTGGCTCGCTGCCGGTGCCCAACGTG
CAAGACCTCGCCGCCCGCCCGGACCACCTCACGCCCACCCTCCTCCGCCGCTATCTTCGC
CCGCACCACCTGTCCCTGCCCGCCGACGACCACCATGCCATGGCTATGATACCTGTCGTT
GACTTTGCCAGGCTCATCGATCACCATGAGGAGGCCGCCAAGCTGAGGCACGCCTGCGAG
GAGTGGGGTTTCTTCCAGGTGATCAACCACGGAATCGCCGACGAGACGGTGGAGGAGATG
AAGCGCGACGTCATGGCCTTCTTCAACCTCCCGCTGGCCGACAAGGCGGCGTTCGCGCAG
CAGCCGGAATGGATCGAGGGCTACGGCCAGGCGTTCGTCACGTCGGAGGACCAGACGCTG
GACTGGTCCGACCTCTACTTCCTCACCACGCAGCCGCCCAGCTACCGCGATCTCCGCTTC
TGGCCACCGGAGACATCCTCCACCTTCCGCCGCTCCATGGACCGCTACTCCCTCGAGACG
CAGCGGGTGGCCACCGAGCTCCTCCGAGCCATGGCGCGCAACCTGGGCCTGCGCGACGCC
GACAAGATGACAAGGCTCGCCGCGGCGCAGTCCATGCGGATGAACTACTACCCGCCATGC
CCGGCCAAGGAGAGGGACAGGGTCCTGGGCGTGTCGCCGCACTCGGACGCCGTGGGGCTG
ACGCTGCTGCTGCAGGTGAGCCCGGTGAAGGGGCTGCAGATCAGGAGGGGCGACGACTGG
ATCCCCGTCGACCCCATCCCCGGCGCACTGGTGGCGAACGTCGGCGACGTGGTCGAGATG
GTGACGAACGGCAGGTACAAGAGCATCGAGCACCGGGTGGTGGTGGACGCGGCGCAGGAG
CGGGTGTCCGTGGCGGCGTTCCACAACGCCACGTTCGGGTCGACGTACGGACCACTGGAG
GAGATGGTGGGAGGCGGCGAGGCGCGCTACCGGAGCATCAGCGTGGAGGACTACGTCAGG
CTCGTCGTCTCCAGCAAGCTCCAGGGCAAGAACATCTTGGACGCTGTCAAGATTATTACT
ACGACTTAA

Peptide Sequence

PEP ID

Os03t0856000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:36103513:36105063:1 gene:Os03g0856000 transcript:Os03t0856000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os03t0856000-01)
Sequence

MECWEKKPRNLGGSLPVPNVQDLAARPDHLTPTLLRRYLRPHHLSLPADDHHAMAMIPVV
DFARLIDHHEEAAKLRHACEEWGFFQVINHGIADETVEEMKRDVMAFFNLPLADKAAFAQ
QPEWIEGYGQAFVTSEDQTLDWSDLYFLTTQPPSYRDLRFWPPETSSTFRRSMDRYSLET
QRVATELLRAMARNLGLRDADKMTRLAAAQSMRMNYYPPCPAKERDRVLGVSPHSDAVGL
TLLLQVSPVKGLQIRRGDDWIPVDPIPGALVANVGDVVEMVTNGRYKSIEHRVVVDAAQE
RVSVAAFHNATFGSTYGPLEEMVGGGEARYRSISVEDYVRLVVSSKLQGKNILDAVKIIT
TT

Transcript Sequence

Transcript ID

Os03t0856000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:36103513:36105063:1 gene:Os03g0856000 gene_biotype:protein_coding transcript_biotype:protein_coding description:2OG-Fe(II) oxygenase domain containing protein. (Os03t0856000-01)
Sequence

GGTGACCAGCTAGCTGATAGCTGAGTCAATTTGTGTGACTTAATTTGCGACCACGTAGCA
GTATATGTATAGTATTAGTATAGCCCCGAAGTTAGTTGAAGACCTCTTGGAGTAGAGATC
GAGGAAGAAGAAATAATCAATGGAGTGTTGGGAGAAGAAGCCAAGGAATCTGGGTGGCTC
GCTGCCGGTGCCCAACGTGCAAGACCTCGCCGCCCGCCCGGACCACCTCACGCCCACCCT
CCTCCGCCGCTATCTTCGCCCGCACCACCTGTCCCTGCCCGCCGACGACCACCATGCCAT
GGCTATGATACCTGTCGTTGACTTTGCCAGGCTCATCGATCACCATGAGGAGGCCGCCAA
GCTGAGGCACGCCTGCGAGGAGTGGGGTTTCTTCCAGGTGATCAACCACGGAATCGCCGA
CGAGACGGTGGAGGAGATGAAGCGCGACGTCATGGCCTTCTTCAACCTCCCGCTGGCCGA
CAAGGCGGCGTTCGCGCAGCAGCCGGAATGGATCGAGGGCTACGGCCAGGCGTTCGTCAC
GTCGGAGGACCAGACGCTGGACTGGTCCGACCTCTACTTCCTCACCACGCAGCCGCCCAG
CTACCGCGATCTCCGCTTCTGGCCACCGGAGACATCCTCCACCTTCCGCCGCTCCATGGA
CCGCTACTCCCTCGAGACGCAGCGGGTGGCCACCGAGCTCCTCCGAGCCATGGCGCGCAA
CCTGGGCCTGCGCGACGCCGACAAGATGACAAGGCTCGCCGCGGCGCAGTCCATGCGGAT
GAACTACTACCCGCCATGCCCGGCCAAGGAGAGGGACAGGGTCCTGGGCGTGTCGCCGCA
CTCGGACGCCGTGGGGCTGACGCTGCTGCTGCAGGTGAGCCCGGTGAAGGGGCTGCAGAT
CAGGAGGGGCGACGACTGGATCCCCGTCGACCCCATCCCCGGCGCACTGGTGGCGAACGT
CGGCGACGTGGTCGAGATGGTGACGAACGGCAGGTACAAGAGCATCGAGCACCGGGTGGT
GGTGGACGCGGCGCAGGAGCGGGTGTCCGTGGCGGCGTTCCACAACGCCACGTTCGGGTC
GACGTACGGACCACTGGAGGAGATGGTGGGAGGCGGCGAGGCGCGCTACCGGAGCATCAG
CGTGGAGGACTACGTCAGGCTCGTCGTCTCCAGCAAGCTCCAGGGCAAGAACATCTTGGA
CGCTGTCAAGATTATTACTACGACTTAATTTCTCATCTTATCATGCCTGCTGATTAATCA
ATCAATCAATCTCCCTGGTTGGTTGGTTGCTGCCGAGTAAACTATTCATGCCACTTCAAT
TATTAGTAGGTAAAAAGGATCTATCATGCATACTACTTTCCGTTTTTATTGGAGTAAGGT
TTATATAGGAGTACCTTTGAATAAACAAACAAATCTCGTCTACTTTGATGTAAAGGTTTG
TTGTATATGAGGTTTGCTTCATTGTACGCTACAGTTGCCTGAGTATACGGCTAATGTACA
TGTGTCTTGCTACATAAACAATTAGTAATTACAAGGTACACAAGCTTTAGC