Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0850100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:35772701:35777460:-1 gene:Os03g0850100 gene_biotype:protein_coding transcript_biotype:protein_coding description:NLI interacting factor domain containing protein. (Os03t0850100-01)
Sequence

ATGCCAACAAGAAAAAAAGGCCTTGCAAGAAATGCCACCACTGAGCATATCAATCCCCCA
AATAGCCGAAAATCAAGCAGATCAACTCAGGCTGCAGCTGCTGAACATAAAGTCAATGAT
CTGATCACTTCTTCCTCCAAAAAGCAGATCGGTGGAGGCCTTCTGAAGAAAAATCGAGCT
CTTAGGGGTGGGAAAAAATTGAATTCTATTTATGATTCTGCTGGTACTGGAAATGATGTC
GCGGGCGTGCCAAGTAGCAGTTTCTTCAATCACAAGCAATCTCATGAAAATGATGAAGAT
CGTTCATGTGATTCCATATTTTCTCCCAGTTTTCACAATCAGAAGGAAGATGTTACTGAC
TGCTTGAGCGAAGGCTTAGTACATGAAGAAGTCATACATGAGCCTGTTCAGAATGCTGAA
TATGTTACCAATAGCATATCATGCAATACTTTTGATGGTTTGAGCAAACACTCTTATGAT
ATTCATATGCAATCGGCATGTGGAAGCACGCTCGAAGGTGATGAATTCAGTGAATTGGGC
AGCCTTTCTCCTGAAGTGTCTGCTATATATCTTGCAATGCAGCACTCAAAGCTAGAGTGT
ATTGATGAACAAAGCCAAGATTCTACCTCAACAGATGGGTGTGCTGATCCTGATGAAACT
GTAGAGCTTGATTATTTTGATCCGTATGCCTTCATAAAAGATTTGCCTGATTTATCTTTG
GTGGTTCCCAAGTTTCAACCTGTTCTTCTTCCAAAGCAAACTCGGAGCTGTCCTAGAACT
ACCCTTGTCCTTGATCTGGATGAGACACTGGTGCACTCTACTCTTGAGCCCTGTGAAGAT
TCTGACTTCACATTCCCAGTTCATTTTAATCTCAGAGAGCACACAATCTATGTGCGTTGC
CGTCCATATCTGAAAGAGTTCTTGGAGACAGTAGCAAGCATGTTTGAGATCATCATTTTC
ACAGCTAGTCAAAGTATTTATGCAGAACAGCTACTTAATATTCTTGATCCTAAAAGGAGG
TTGTTCCGCCATCGAGTTTACCGCGAGTCCTGTCTCTTTGTGGAGGGAAACTACTTAAAG
GATCTATCAGTTCTTGGACGTGACTTGGCTCGTGTGGTCATTGTTGATAATTCACCACAG
GCCTTTGGGTTCCAATTAGACAACGGCGTCCCTATTGAAAGTTGGTTTGATGATCGTAAT
GACAGAGAACTCCTAACATTACTTCCATTTTTGCAAAGTTTGGTTGGGGTGGAAGATGTC
CGGCCATGTATTGCAAGGAAGTTCAACCTTCGTGAGAAGGTTGCCACTGCACCTTCTCTC
TCTATGCACTTTTAG

Peptide Sequence

PEP ID

Os03t0850100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:35772701:35777460:-1 gene:Os03g0850100 transcript:Os03t0850100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:NLI interacting factor domain containing protein. (Os03t0850100-01)
Sequence

MPTRKKGLARNATTEHINPPNSRKSSRSTQAAAAEHKVNDLITSSSKKQIGGGLLKKNRA
LRGGKKLNSIYDSAGTGNDVAGVPSSSFFNHKQSHENDEDRSCDSIFSPSFHNQKEDVTD
CLSEGLVHEEVIHEPVQNAEYVTNSISCNTFDGLSKHSYDIHMQSACGSTLEGDEFSELG
SLSPEVSAIYLAMQHSKLECIDEQSQDSTSTDGCADPDETVELDYFDPYAFIKDLPDLSL
VVPKFQPVLLPKQTRSCPRTTLVLDLDETLVHSTLEPCEDSDFTFPVHFNLREHTIYVRC
RPYLKEFLETVASMFEIIIFTASQSIYAEQLLNILDPKRRLFRHRVYRESCLFVEGNYLK
DLSVLGRDLARVVIVDNSPQAFGFQLDNGVPIESWFDDRNDRELLTLLPFLQSLVGVEDV
RPCIARKFNLREKVATAPSLSMHF

Transcript Sequence

Transcript ID

Os03t0850100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:35772701:35777460:-1 gene:Os03g0850100 gene_biotype:protein_coding transcript_biotype:protein_coding description:NLI interacting factor domain containing protein. (Os03t0850100-01)
Sequence

GACGATTCAAAAATCCCTCTTCTCCTGTCCGCTTCCTCTCCGGCCGCCGCCGCTAGGGTT
TGGTTTCCGCCGCCTCCTCCGGCTGGTCCCGTCCCGCCCGCCGCCGCCTCTGCTCTCCTT
GTTCCGGTCAGCACCCTGAAAGTTGCACAATAACCCTGAGCAGTCTTCACCAAGGAAACG
GGCTGTCTGCTTGTCTGATGTGCTATTCTTGTTCTGGTATATAAATCGGCTGCTATTTAG
GACACTTCTTGATTGAAAATGCCAACAAGAAAAAAAGGCCTTGCAAGAAATGCCACCACT
GAGCATATCAATCCCCCAAATAGCCGAAAATCAAGCAGATCAACTCAGGCTGCAGCTGCT
GAACATAAAGTCAATGATCTGATCACTTCTTCCTCCAAAAAGCAGATCGGTGGAGGCCTT
CTGAAGAAAAATCGAGCTCTTAGGGGTGGGAAAAAATTGAATTCTATTTATGATTCTGCT
GGTACTGGAAATGATGTCGCGGGCGTGCCAAGTAGCAGTTTCTTCAATCACAAGCAATCT
CATGAAAATGATGAAGATCGTTCATGTGATTCCATATTTTCTCCCAGTTTTCACAATCAG
AAGGAAGATGTTACTGACTGCTTGAGCGAAGGCTTAGTACATGAAGAAGTCATACATGAG
CCTGTTCAGAATGCTGAATATGTTACCAATAGCATATCATGCAATACTTTTGATGGTTTG
AGCAAACACTCTTATGATATTCATATGCAATCGGCATGTGGAAGCACGCTCGAAGGTGAT
GAATTCAGTGAATTGGGCAGCCTTTCTCCTGAAGTGTCTGCTATATATCTTGCAATGCAG
CACTCAAAGCTAGAGTGTATTGATGAACAAAGCCAAGATTCTACCTCAACAGATGGGTGT
GCTGATCCTGATGAAACTGTAGAGCTTGATTATTTTGATCCGTATGCCTTCATAAAAGAT
TTGCCTGATTTATCTTTGGTGGTTCCCAAGTTTCAACCTGTTCTTCTTCCAAAGCAAACT
CGGAGCTGTCCTAGAACTACCCTTGTCCTTGATCTGGATGAGACACTGGTGCACTCTACT
CTTGAGCCCTGTGAAGATTCTGACTTCACATTCCCAGTTCATTTTAATCTCAGAGAGCAC
ACAATCTATGTGCGTTGCCGTCCATATCTGAAAGAGTTCTTGGAGACAGTAGCAAGCATG
TTTGAGATCATCATTTTCACAGCTAGTCAAAGTATTTATGCAGAACAGCTACTTAATATT
CTTGATCCTAAAAGGAGGTTGTTCCGCCATCGAGTTTACCGCGAGTCCTGTCTCTTTGTG
GAGGGAAACTACTTAAAGGATCTATCAGTTCTTGGACGTGACTTGGCTCGTGTGGTCATT
GTTGATAATTCACCACAGGCCTTTGGGTTCCAATTAGACAACGGCGTCCCTATTGAAAGT
TGGTTTGATGATCGTAATGACAGAGAACTCCTAACATTACTTCCATTTTTGCAAAGTTTG
GTTGGGGTGGAAGATGTCCGGCCATGTATTGCAAGGAAGTTCAACCTTCGTGAGAAGGTT
GCCACTGCACCTTCTCTCTCTATGCACTTTTAGATGATCAAATCATTTTCTGGGATATAG
AGAAATAAATTGAAGTGGCAGTTGTACTCTATAGAGAAGGAAAACATGGGCAGTTGTGTG
AATTGCTGGAGAGGACCCAAGGTGGTGAATTATCTGTATCTTTGCCCTGGTGTAATCCTG
TGTACTTGGAACCCATAAAATCGTGTAAAATATGCTCTGTTGTACTAATATTTATACCTG
AAGAACTAGGGAATCCTGTGTTAGCATTAAGTTAAAATACTCTACATGAGAGTTGGCATG
GCCTTCTTGTTGTGCATTGCAGATAGAACTGCTCAGCACACAATAGATTATCCTCTTGGT
CCAGTGAGTCTGTAATTGTCGAAAGT