Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0845500-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:35549181:35558048:-1 gene:Os03g0845500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Acyl-CoA synthetase-like protein. (Os03t0845500-01)
Sequence

ATGCTCGCCTCCTCCGCCTCCGGCCAAATGGCGGCGCTCTGCTCCCCCTCGCCGACGCTC
CCCACCGCCTCCCTCCTCCTCCTGCGTCGCCGCCGCCTCCGCCTCCTCCACCCACCGCCT
TCCGCCGCCGCGCTGCTGCTCCTCCTCCCCGCCCGCCGCCGGGGCCGCCACCACCACCGC
CGAGGTGGGGTCCTCCGGTGCGACGCCGCCGCGGCGTCCCCCTCCGCGGGTTCCACGCTA
GAAAACCCAGTTCGCAGAAAGTGCTCACCATTACTTGAGAGTGCTCTATTACCTGGTGGA
AATGGTTTGACTACGCATGATTGGATGGCTGTTCCAGACATTTGGAGGACAGCAGCAGAA
AAATATGCTGACCGTGTAGCTTTGGTAGATCCTTACCATGAACCTCCTTCAGAATTGACT
TATAAGCAGCTTGAACAAGAAATATTGGATTTTTCTCAAGGTCTAAGGGCCATTGGAGTT
GCTCCAGATGAAAAGATAGCCCTTTTTGCTGATAACTCATGCCGATGGCTAGTTGCAGAT
CAAGGAATCATGGCTACTGGTGCTATAAATGTTGTTAGAGGAACAAGATCTTCTGATGAA
GAATTATTTCAAATTTACACTCATTCAGAAAGCATTGCACTTGTTGTGGACAGTCCTCAA
TTCTTTAACCGGCTTGCAGAATCTTTTATTTCGAGGATTAACGCAAGATTTATTGTGCTA
CTTTGGGGTGAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCACTTTATGAC
TTCAAGGATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACTCTCATGAA
CAAGGTCAGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACACTAATATAT
ACCAGTGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAACCTCTTGCAT
CAGATTAAAAATTTGTGGGATTTTGTACCAGCAGTACCTGGTGATAGGTTCCTAAGCATG
CTTCCACCATGGCATGCATATGAGCGTGCTAGCGAGTACTTCATCTTCACTTATGGAATT
CAACAAGTTTACACGACTGTCAAGTACCTGAAGGAAGATTTGCAACGATACCAACCTCAA
TACATAGTATCAGTTCCACTGGTCTATGAGATTCTCTACAGCTCAATTCAGAGACAGATA
TCTTCCAGTTCAACTGCTCGGAAATTTGTTGCTCTTGCACTTATTAAGATAAGTTTGCTA
TATATGGAGGCAAAGAGGATATACGAGGGAACAGTCCTATCGAACAATCCCGTCAAACCA
TCCTTTATTGTGTATATGGTCAATTGGCTATCTGCAAGAATTGTTGCTGCACTTCTGTGG
CCTTTGCATAATCTGGCAAAGACGTTAGTCTACAAGAAAATCCATTCTGCAATTGGGATT
TCAAAGGCTGGCATTAGTGGTGGTGGAAGTCTCCCGATGCATGTTGACAAATTTTTTGAG
GCCATCGGTGTCAAAGTGCAAAATGGCTATGGTCTAACAGAGACATCCCCTGTTGTAGCT
GCTAGACGGCCATTCTGTAACGTTCTTGGCACAGTTGGCCACCCAGTAAAGCACACGGAA
ATCAAGGTTGTGGATATGGAGACTGGTGAGGTTCTTCCAGATGGTTCAAAGGGGGTTGTG
AAAGTCAGAGGACCCCAAGTGATGAAGGGATATTACAAGAATCCGTCAGCTACAAATAAA
GTTTTGGATCAAGAAGGTTGGTTTGACACAGGGGATATTGGTTGGATTGCACCTCACTGT
CCAACAGGGCCAAGTCGGAAGTGTGGAGGGATGCTTGTTCTTGAAGGGCGTGCAAAAGAT
ACAATAGTTCTCACAACAGGTGAAAATGTTGAACCTGCTGAGATTGAGGAAGCAGCCAGC
AGGAGTGACTTGATTAATCAGATAGTTGTTGTTGGCCAGGACAAGCGGCGAATTGGTGCT
CTTATCGTTCCCAACTATGATGAAGTTCTAGCAACAGCTAAAAGGAAGTCCATTCTTGAT
GGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTGCTATATGATGAGCTGAGAACT
TGGATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAACCATTTACG
GTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGACAAAGTGACTGCCAAA
TATCATAGAGAGATTGATGCGTTGTACAAGTGA

Peptide Sequence

PEP ID

Os03t0845500-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:35549181:35558048:-1 gene:Os03g0845500 transcript:Os03t0845500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Acyl-CoA synthetase-like protein. (Os03t0845500-01)
Sequence

MLASSASGQMAALCSPSPTLPTASLLLLRRRRLRLLHPPPSAAALLLLLPARRRGRHHHR
RGGVLRCDAAAASPSAGSTLENPVRRKCSPLLESALLPGGNGLTTHDWMAVPDIWRTAAE
KYADRVALVDPYHEPPSELTYKQLEQEILDFSQGLRAIGVAPDEKIALFADNSCRWLVAD
QGIMATGAINVVRGTRSSDEELFQIYTHSESIALVVDSPQFFNRLAESFISRINARFIVL
LWGEKSCLNSEVVNGIPLYDFKDITQLGRESRNTLRHSHEQGQQVVFETITPDDVATLIY
TSGTSGTPKGVMLTHRNLLHQIKNLWDFVPAVPGDRFLSMLPPWHAYERASEYFIFTYGI
QQVYTTVKYLKEDLQRYQPQYIVSVPLVYEILYSSIQRQISSSSTARKFVALALIKISLL
YMEAKRIYEGTVLSNNPVKPSFIVYMVNWLSARIVAALLWPLHNLAKTLVYKKIHSAIGI
SKAGISGGGSLPMHVDKFFEAIGVKVQNGYGLTETSPVVAARRPFCNVLGTVGHPVKHTE
IKVVDMETGEVLPDGSKGVVKVRGPQVMKGYYKNPSATNKVLDQEGWFDTGDIGWIAPHC
PTGPSRKCGGMLVLEGRAKDTIVLTTGENVEPAEIEEAASRSDLINQIVVVGQDKRRIGA
LIVPNYDEVLATAKRKSILDGNNELAKDKVLNLLYDELRTWMVDCSFQIGPILIVDEPFT
VDNGLLTPTLKLRRDKVTAKYHREIDALYK

Transcript Sequence

Transcript ID

Os03t0845500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:35549181:35558048:-1 gene:Os03g0845500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Acyl-CoA synthetase-like protein. (Os03t0845500-01)
Sequence

AGGCCCGAGACCAGACAACCCACCTCACCTCACCTCTCCACCCATCTCGGCGTCGTCGTC
GTCATCTCCGCCGCTCCACCAATCCCCCTTCCGCTAGTGTGCTACACATCACTGCTGCTC
CCCTCCACCCCAACCCCACCACGTCAGTGGAGACCCCCCCGATCGCCGCCACCTCGCCGC
GCCCGGCGATGCTCGCCTCCTCCGCCTCCGGCCAAATGGCGGCGCTCTGCTCCCCCTCGC
CGACGCTCCCCACCGCCTCCCTCCTCCTCCTGCGTCGCCGCCGCCTCCGCCTCCTCCACC
CACCGCCTTCCGCCGCCGCGCTGCTGCTCCTCCTCCCCGCCCGCCGCCGGGGCCGCCACC
ACCACCGCCGAGGTGGGGTCCTCCGGTGCGACGCCGCCGCGGCGTCCCCCTCCGCGGGTT
CCACGCTAGAAAACCCAGTTCGCAGAAAGTGCTCACCATTACTTGAGAGTGCTCTATTAC
CTGGTGGAAATGGTTTGACTACGCATGATTGGATGGCTGTTCCAGACATTTGGAGGACAG
CAGCAGAAAAATATGCTGACCGTGTAGCTTTGGTAGATCCTTACCATGAACCTCCTTCAG
AATTGACTTATAAGCAGCTTGAACAAGAAATATTGGATTTTTCTCAAGGTCTAAGGGCCA
TTGGAGTTGCTCCAGATGAAAAGATAGCCCTTTTTGCTGATAACTCATGCCGATGGCTAG
TTGCAGATCAAGGAATCATGGCTACTGGTGCTATAAATGTTGTTAGAGGAACAAGATCTT
CTGATGAAGAATTATTTCAAATTTACACTCATTCAGAAAGCATTGCACTTGTTGTGGACA
GTCCTCAATTCTTTAACCGGCTTGCAGAATCTTTTATTTCGAGGATTAACGCAAGATTTA
TTGTGCTACTTTGGGGTGAGAAATCGTGCCTAAACAGTGAAGTTGTGAATGGAATACCAC
TTTATGACTTCAAGGATATCACTCAACTCGGACGAGAAAGCCGTAATACATTGCGTCACT
CTCATGAACAAGGTCAGCAGGTCGTCTTTGAAACTATTACTCCAGATGATGTTGCTACAC
TAATATATACCAGTGGAACGAGTGGAACACCAAAAGGAGTGATGCTTACCCACCGAAACC
TCTTGCATCAGATTAAAAATTTGTGGGATTTTGTACCAGCAGTACCTGGTGATAGGTTCC
TAAGCATGCTTCCACCATGGCATGCATATGAGCGTGCTAGCGAGTACTTCATCTTCACTT
ATGGAATTCAACAAGTTTACACGACTGTCAAGTACCTGAAGGAAGATTTGCAACGATACC
AACCTCAATACATAGTATCAGTTCCACTGGTCTATGAGATTCTCTACAGCTCAATTCAGA
GACAGATATCTTCCAGTTCAACTGCTCGGAAATTTGTTGCTCTTGCACTTATTAAGATAA
GTTTGCTATATATGGAGGCAAAGAGGATATACGAGGGAACAGTCCTATCGAACAATCCCG
TCAAACCATCCTTTATTGTGTATATGGTCAATTGGCTATCTGCAAGAATTGTTGCTGCAC
TTCTGTGGCCTTTGCATAATCTGGCAAAGACGTTAGTCTACAAGAAAATCCATTCTGCAA
TTGGGATTTCAAAGGCTGGCATTAGTGGTGGTGGAAGTCTCCCGATGCATGTTGACAAAT
TTTTTGAGGCCATCGGTGTCAAAGTGCAAAATGGCTATGGTCTAACAGAGACATCCCCTG
TTGTAGCTGCTAGACGGCCATTCTGTAACGTTCTTGGCACAGTTGGCCACCCAGTAAAGC
ACACGGAAATCAAGGTTGTGGATATGGAGACTGGTGAGGTTCTTCCAGATGGTTCAAAGG
GGGTTGTGAAAGTCAGAGGACCCCAAGTGATGAAGGGATATTACAAGAATCCGTCAGCTA
CAAATAAAGTTTTGGATCAAGAAGGTTGGTTTGACACAGGGGATATTGGTTGGATTGCAC
CTCACTGTCCAACAGGGCCAAGTCGGAAGTGTGGAGGGATGCTTGTTCTTGAAGGGCGTG
CAAAAGATACAATAGTTCTCACAACAGGTGAAAATGTTGAACCTGCTGAGATTGAGGAAG
CAGCCAGCAGGAGTGACTTGATTAATCAGATAGTTGTTGTTGGCCAGGACAAGCGGCGAA
TTGGTGCTCTTATCGTTCCCAACTATGATGAAGTTCTAGCAACAGCTAAAAGGAAGTCCA
TTCTTGATGGGAATAACGAACTAGCCAAAGATAAGGTTTTGAACTTGCTATATGATGAGC
TGAGAACTTGGATGGTGGATTGTTCCTTCCAAATTGGCCCGATTCTAATTGTCGATGAAC
CATTTACGGTGGATAATGGTTTGCTAACACCCACTTTGAAATTACGGAGGGACAAAGTGA
CTGCCAAATATCATAGAGAGATTGATGCGTTGTACAAGTGATGTGGAGTGAGCATGAGTA
CATACAGACAGTAGTTTGCATTTTCTTTGCCTTGGAAGACATCTCTTGAGTAGACAGTAG
CTAGAACATACAATAATGCAACCATTTTAAAATTTTTTTGGAGTGAAATGGAATAAGGTT
GCTGATTCAGTATGTATAAGCATTATTTCTCCTCCATATCGATGTGATCTCACCACAATA
TATGCATCGGGAGGGACAATTTGTGGACGATGCACTGTGTTACTGTGACTGAATTTCGTA
GAACCGAATTTACT