Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0841900-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:35393753:35398295:-1 gene:Os03g0841900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to carotenoid isomerase 1. (Os03t0841900-00)
Sequence

ATGGGCCTCGCTTCCCATCTTCTCCATGTCTCACGGGAGAGATCGGGTCGGCTGCCGCGG
AAGGAGAAAGGCCGGCGAAGTGCCACGTGTCCACGACGGCCGCCTCACTCCAACCGCGGC
CTGATCCCGAAGCTATGTGGCGTAGCCGGCGAGACGCGCGCTATTCTCCGCCTCCGACAT
GGCTTCCGCCGCCTTGGCCTCCCGCGCGCTGCCGCCTCCGCCCCGCCACTGCGCTCGCCG
CCCGCGCGCTCCACCGACCACCGCCCCACGGCCACGACGCGGATGCGCGGCCGCCGCTCG
TCCCGCGCGCTGCAGGGCGGTGGCCGCCGACGAGCGCCCCGCGGACCCCGGGAGGCGGAG
AGGCCGGAGGCGGACGTCGTCGTCATCGGGAGCGGGATCGGCGGGCTGTGCTGCGCGGGG
CTCCTGGCGAGGTATAACCAGGACGTGCTCGTGCTCGAGAGCCATGACCGCCCCGGAGGC
GCCGCGCACTCGTTTGACATCAAGGGCTTCAACTTCGACTCGGGCCCTTCCCTGTTCTCC
GGCTTCCAGTCCAGAGGCCCCCAGGCCAATCCCCTCGCCCAGGTCCTTGATGCGCTAGGC
GAATCAGTTCCATGTGCCTCATATGATTCCTGGATGGTTTATGTACCTGAAGGCCAGTTC
CTTTCGCGGATAGGTCCAACTGATTTCCTCAAGGACCTTGATGAATTTGTTGGTGCTGAT
GCAGTCCAGGAGTGGAAAAAGCTTCTTGATGCAGTTATTCCTATCTCTGCAGCTGCAATG
GCTTTGCCTCCACTTTCCATTCGAGGTGATTTAGGTGTTCTCTCCACATCTGCTGGTAGA
TATGCTCCTTCTCTGTTGAAATCAATCCTGCAAATGGGACCTCAAGGGGCTCTTGGTGCT
ACAAAACTTCTAAGACCTTTCTCAGAGATCGTTGATTCATTGGGCCTGAAAAACCCCTTT
GTTCGTAATTGGATCGATCTCTTGTGTTTTCTACTTGCTGGAGTCAAATCTGATGGTGCT
CTTTCTGCAGAAATGGTTTATATGTTTGCAGAATGGTATAAACCAGGATGCTCGCTTGAG
TATCCTCTTGAGGGAAGCGGAGCAATAATAGATGCTCTTGTGCGAGGAATAAAAAAATTT
GGTGGCAGGCTTGCTCTTCGTTCGCATGTTGAAAAGATTTTAATTGAGAATGGTCGAGCA
GTTGGTGTCAAGCTACAAAGTGGACAAATTGTGCGCGCAAGGAAAGCAGTTGTTAGCAAT
GCATCTATGTGGGATACTTTGGATTTGCTGCCACCAGATGCTGTCCCAAGATCATATCAA
GACAAAGTGAAAGCAACTCCACAATGTGAATCATTTATGCATCTCCACTTGGGTTTTGAT
GTCGAGAATGCCAGAGAGGACCTTGGAATCCATCATATTGTGGTTAATGATTGGAACAAA
GGAGTTGATGCTGACCAGAACGTTGTATTGATATCAGTTCCTACTGTTCTTGGAAATGGC
TTAGCACCGCCTGGAAAGCACGTCCTACATGCTTATACACCAGGAACAGAACCTTTCAGT
TTGTGGGAAGGACTAGATAGGAAAAGCGCCGAGTATCGAAGGCTGAAAGAAGAACGCTCT
GAGGTGATGTGGAAAGCCGTGGAGCTTGCCCTTGGTCCAAGATTTAGCAGAGAAAAATGC
GATGTGAAGCTGGTTGGATCACCATTAACACACAAGAGGTTCCTCCGAAGAAATAGAGGA
ACCTATGGTCCAGCCATAAAAGCTGGGGAGGCCACTTTCCCTGGGCAGGCAACACCTATA
CCCCAGCTATTCTGCTGTGGTGACTCGACTTTTCCAGGCATCGGTGTACCGGCCGTCGCT
GCAAGTGGTGCAATTGTCGCAAACACGCTAGTCTCCGTGTCACAACATTCAGAGCTTCTT
GATGCTGTTGGAATTTGA

Peptide Sequence

PEP ID

Os03t0841900-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:35393753:35398295:-1 gene:Os03g0841900 transcript:Os03t0841900-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to carotenoid isomerase 1. (Os03t0841900-00)
Sequence

MGLASHLLHVSRERSGRLPRKEKGRRSATCPRRPPHSNRGLIPKLCGVAGETRAILRLRH
GFRRLGLPRAAASAPPLRSPPARSTDHRPTATTRMRGRRSSRALQGGGRRRAPRGPREAE
RPEADVVVIGSGIGGLCCAGLLARYNQDVLVLESHDRPGGAAHSFDIKGFNFDSGPSLFS
GFQSRGPQANPLAQVLDALGESVPCASYDSWMVYVPEGQFLSRIGPTDFLKDLDEFVGAD
AVQEWKKLLDAVIPISAAAMALPPLSIRGDLGVLSTSAGRYAPSLLKSILQMGPQGALGA
TKLLRPFSEIVDSLGLKNPFVRNWIDLLCFLLAGVKSDGALSAEMVYMFAEWYKPGCSLE
YPLEGSGAIIDALVRGIKKFGGRLALRSHVEKILIENGRAVGVKLQSGQIVRARKAVVSN
ASMWDTLDLLPPDAVPRSYQDKVKATPQCESFMHLHLGFDVENAREDLGIHHIVVNDWNK
GVDADQNVVLISVPTVLGNGLAPPGKHVLHAYTPGTEPFSLWEGLDRKSAEYRRLKEERS
EVMWKAVELALGPRFSREKCDVKLVGSPLTHKRFLRRNRGTYGPAIKAGEATFPGQATPI
PQLFCCGDSTFPGIGVPAVAASGAIVANTLVSVSQHSELLDAVGI

Transcript Sequence

Transcript ID

Os03t0841900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:35393753:35398295:-1 gene:Os03g0841900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to carotenoid isomerase 1. (Os03t0841900-00)
Sequence

ATGGGCCTCGCTTCCCATCTTCTCCATGTCTCACGGGAGAGATCGGGTCGGCTGCCGCGG
AAGGAGAAAGGCCGGCGAAGTGCCACGTGTCCACGACGGCCGCCTCACTCCAACCGCGGC
CTGATCCCGAAGCTATGTGGCGTAGCCGGCGAGACGCGCGCTATTCTCCGCCTCCGACAT
GGCTTCCGCCGCCTTGGCCTCCCGCGCGCTGCCGCCTCCGCCCCGCCACTGCGCTCGCCG
CCCGCGCGCTCCACCGACCACCGCCCCACGGCCACGACGCGGATGCGCGGCCGCCGCTCG
TCCCGCGCGCTGCAGGGCGGTGGCCGCCGACGAGCGCCCCGCGGACCCCGGGAGGCGGAG
AGGCCGGAGGCGGACGTCGTCGTCATCGGGAGCGGGATCGGCGGGCTGTGCTGCGCGGGG
CTCCTGGCGAGGTATAACCAGGACGTGCTCGTGCTCGAGAGCCATGACCGCCCCGGAGGC
GCCGCGCACTCGTTTGACATCAAGGGCTTCAACTTCGACTCGGGCCCTTCCCTGTTCTCC
GGCTTCCAGTCCAGAGGCCCCCAGGCCAATCCCCTCGCCCAGGTCCTTGATGCGCTAGGC
GAATCAGTTCCATGTGCCTCATATGATTCCTGGATGGTTTATGTACCTGAAGGCCAGTTC
CTTTCGCGGATAGGTCCAACTGATTTCCTCAAGGACCTTGATGAATTTGTTGGTGCTGAT
GCAGTCCAGGAGTGGAAAAAGCTTCTTGATGCAGTTATTCCTATCTCTGCAGCTGCAATG
GCTTTGCCTCCACTTTCCATTCGAGGTGATTTAGGTGTTCTCTCCACATCTGCTGGTAGA
TATGCTCCTTCTCTGTTGAAATCAATCCTGCAAATGGGACCTCAAGGGGCTCTTGGTGCT
ACAAAACTTCTAAGACCTTTCTCAGAGATCGTTGATTCATTGGGCCTGAAAAACCCCTTT
GTTCGTAATTGGATCGATCTCTTGTGTTTTCTACTTGCTGGAGTCAAATCTGATGGTGCT
CTTTCTGCAGAAATGGTTTATATGTTTGCAGAATGGTATAAACCAGGATGCTCGCTTGAG
TATCCTCTTGAGGGAAGCGGAGCAATAATAGATGCTCTTGTGCGAGGAATAAAAAAATTT
GGTGGCAGGCTTGCTCTTCGTTCGCATGTTGAAAAGATTTTAATTGAGAATGGTCGAGCA
GTTGGTGTCAAGCTACAAAGTGGACAAATTGTGCGCGCAAGGAAAGCAGTTGTTAGCAAT
GCATCTATGTGGGATACTTTGGATTTGCTGCCACCAGATGCTGTCCCAAGATCATATCAA
GACAAAGTGAAAGCAACTCCACAATGTGAATCATTTATGCATCTCCACTTGGGTTTTGAT
GTCGAGAATGCCAGAGAGGACCTTGGAATCCATCATATTGTGGTTAATGATTGGAACAAA
GGAGTTGATGCTGACCAGAACGTTGTATTGATATCAGTTCCTACTGTTCTTGGAAATGGC
TTAGCACCGCCTGGAAAGCACGTCCTACATGCTTATACACCAGGAACAGAACCTTTCAGT
TTGTGGGAAGGACTAGATAGGAAAAGCGCCGAGTATCGAAGGCTGAAAGAAGAACGCTCT
GAGGTGATGTGGAAAGCCGTGGAGCTTGCCCTTGGTCCAAGATTTAGCAGAGAAAAATGC
GATGTGAAGCTGGTTGGATCACCATTAACACACAAGAGGTTCCTCCGAAGAAATAGAGGA
ACCTATGGTCCAGCCATAAAAGCTGGGGAGGCCACTTTCCCTGGGCAGGCAACACCTATA
CCCCAGCTATTCTGCTGTGGTGACTCGACTTTTCCAGGCATCGGTGTACCGGCCGTCGCT
GCAAGTGGTGCAATTGTCGCAAACACGCTAGTCTCCGTGTCACAACATTCAGAGCTTCTT
GATGCTGTTGGAATTTGACATGCAGACGTGC