Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0840200-02
CDS Infomation	cds chromosome:IRGSP-1.0:3:35332122:35334407:1 gene:Os03g0840200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0840200-01);Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0840200-02)
Sequence	ATGGCCACTCCTTTGCTCGCCGCGCTCCTCGCCGCCGCGCTGCTCGCCTCGCCGGCGGCG CCGGCGGCGTCGGCCAGCGGCGGCACCATCGTCTTCACCACCCTCGGCCGCAGCCGCTAC GAGTTCGACATCTTCTCCCTCCCCCTCGCGCCCTCCCCCCATAACCCCGCCGCCGCCGCC GAGCTCCGCCTCACCGATGGCGTCTCCGTCAACTACAACGGCAACTTCGCCCCCGCCTCC GATTCCATCCTCTTCGTCTCCGAGCGCAACGGCTCCCTCAACCTCTACCTCTCCCCGGTT CCCTCCTCCCGCCGCGAGGCGCTCGAGTCGGCGTCGTCGTCGTCGTCTTCGGCGGCGGCG ACGATCTCGCCGCTCCTCCCATGGGAGCCAATCGCGCTCAAGGACCGGCCGTCGCTCACC CCCGACGGCTCCCGCCTCGTCTACGTCTCCACCGCCGTCCCCGCCGCGGAGCCGCGCAGC AGCTGGGCCGCCGTGTACTCCACCGAGCTGTCCACCGGCCGCACGCGCCGCCTCACGCCG CTTGGCGTTGCGGACTTCAGCCCCGCCGTGTCGCCCTCGGGCGAGTGGACGGCCGCCGCG TCGCCCGGCGCCGCCGGTTGGAGCGGCGAGGTCGAGGACCTGCGCACTGACATCTACGTC TTCCGCACCGCCGACGGGTCGCGCCGGTCGCTCGCCATCCGTGACGGCGGCTGGCCGAGC TGGGCCGACGAGACCACCGTCTTCTTCCACCGCCGGGACAGCGACGGTTGGTACGGCGTC TACCGCGCCGAGATCTCCGTCACCGGCGACGGGGTCGAAGCGGCGTCCGTGGAGCGAATC ACCCCGCCGGGGTTCCACGCCTTCACGCCGGCCGCGTCGCCCGGCGCGCCGGGGCTCGTG GCGGTGGCGACACGGCGGGCGGGCTCCGACTACCGCCACATCGAGGTGATCGACGTGAGC AGCGACGGCAAGAACGCCTACTTCGAGGTGACCAGGCCCGTGGCACCGCGCGTGCACCAC TTCAACCCATTCATCTCGCCGGACGGCGCGCGCGTCGGGTACCACCGGTGCCGGGGGAGA GGGAACGGCGACTCGCCGCTGCTGCTGGAGAACATCAAGAGCCCAGGGTCACCGGACACG TTCTCGCTCTTCAGGATCGACGGCTCGTTCCCCTCCTTCTCGCACGACGGCAAGAAGATC GCGTTCGTCGGGCTGCCGGGGATGTACGTGGTGAACTCCGACGGCTCCGGTGGTCGCCGC AAGATCTTCTCCGGGAACGCCTTCTCGACGTCGTGGGACTGGAAGAGGAAAGGCGTGGTA TACACCAGCATCGGGCCGGATTTCGCCAGCGAGACCACGGAGGTGGACGTGGTGGCCATC TCCCTCGGCGACGACGACGACGAGTCAACCATCTCGATGAAGAAGCTGACCGTGGGAGGC GAGAACAACGCGTTCCCGTCGCCGTCGCCGGACGGGAAGTGGGTGGTGTTCCGGTCGGGG AGATCCGGGAACAAGAACCTGTACATCATCGACGCCGAGGACGGCGAGGCCGGCGGCATC CGGCGGCTGACGGAGGGGCCATGGTCGGACACGATGTGCAACTGGTCACCCGACGGCGAG TGGATCGCCTTCGCCTCCGACCGCCATGCCCCGGGGAGCGGCAGCTTCGCCATCTACATG GTGCACCCCAATGGCACCGGGCTGCGGCGGGTGGTGCACAGCGGCGGCAGCGGCCGGACC AACCACCCATGGTTCAGCCCGGACTCCAAGAGCCTCGTCTTCACCTCCGACTACGCCGCC GTCTCCGCCGAGCCGGTCTCCAACCCTCACCATTACCAGCCATACGGCGAGATCTTCACC GTCGACATCGACGGGTCCAACATCCGGCGGCTCACGCACAACTCGTTCGAGGACGGCACG CCGTCGTGGACGCCATACTTCCTGGAGCCCCGAGACGTCGGCGAGACGCTGCAAGCCTCG GGCAGGTGCGCGTTCCAGGATTGCCACTGGCTCAACATCCAAGATGCTGCCCAACCTGAA GAGCTCAACTATGGCAAGAGCTGCTGA

Peptide Sequence

PEP ID	Os03t0840200-02
PEP Infomation	pep chromosome:IRGSP-1.0:3:35332122:35334407:1 gene:Os03g0840200 transcript:Os03t0840200-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0840200-01);Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0840200-02)
Sequence	MATPLLAALLAAALLASPAAPAASASGGTIVFTTLGRSRYEFDIFSLPLAPSPHNPAAAA ELRLTDGVSVNYNGNFAPASDSILFVSERNGSLNLYLSPVPSSRREALESASSSSSSAAA TISPLLPWEPIALKDRPSLTPDGSRLVYVSTAVPAAEPRSSWAAVYSTELSTGRTRRLTP LGVADFSPAVSPSGEWTAAASPGAAGWSGEVEDLRTDIYVFRTADGSRRSLAIRDGGWPS WADETTVFFHRRDSDGWYGVYRAEISVTGDGVEAASVERITPPGFHAFTPAASPGAPGLV AVATRRAGSDYRHIEVIDVSSDGKNAYFEVTRPVAPRVHHFNPFISPDGARVGYHRCRGR GNGDSPLLLENIKSPGSPDTFSLFRIDGSFPSFSHDGKKIAFVGLPGMYVVNSDGSGGRR KIFSGNAFSTSWDWKRKGVVYTSIGPDFASETTEVDVVAISLGDDDDESTISMKKLTVGG ENNAFPSPSPDGKWVVFRSGRSGNKNLYIIDAEDGEAGGIRRLTEGPWSDTMCNWSPDGE WIAFASDRHAPGSGSFAIYMVHPNGTGLRRVVHSGGSGRTNHPWFSPDSKSLVFTSDYAA VSAEPVSNPHHYQPYGEIFTVDIDGSNIRRLTHNSFEDGTPSWTPYFLEPRDVGETLQAS GRCAFQDCHWLNIQDAAQPEELNYGKSC

Transcript Sequence

Transcript ID	Os03t0840200-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:35332122:35334407:1 gene:Os03g0840200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0840200-01);Six-bladed beta-propeller, TolB-like domain containing protein. (Os03t0840200-02)
Sequence	AACCTGTAGCCCGCTTCAGTCCGACGACCATGGCCACTCCTTTGCTCGCCGCGCTCCTCG CCGCCGCGCTGCTCGCCTCGCCGGCGGCGCCGGCGGCGTCGGCCAGCGGCGGCACCATCG TCTTCACCACCCTCGGCCGCAGCCGCTACGAGTTCGACATCTTCTCCCTCCCCCTCGCGC CCTCCCCCCATAACCCCGCCGCCGCCGCCGAGCTCCGCCTCACCGATGGCGTCTCCGTCA ACTACAACGGCAACTTCGCCCCCGCCTCCGATTCCATCCTCTTCGTCTCCGAGCGCAACG GCTCCCTCAACCTCTACCTCTCCCCGGTTCCCTCCTCCCGCCGCGAGGCGCTCGAGTCGG CGTCGTCGTCGTCGTCTTCGGCGGCGGCGACGATCTCGCCGCTCCTCCCATGGGAGCCAA TCGCGCTCAAGGACCGGCCGTCGCTCACCCCCGACGGCTCCCGCCTCGTCTACGTCTCCA CCGCCGTCCCCGCCGCGGAGCCGCGCAGCAGCTGGGCCGCCGTGTACTCCACCGAGCTGT CCACCGGCCGCACGCGCCGCCTCACGCCGCTTGGCGTTGCGGACTTCAGCCCCGCCGTGT CGCCCTCGGGCGAGTGGACGGCCGCCGCGTCGCCCGGCGCCGCCGGTTGGAGCGGCGAGG TCGAGGACCTGCGCACTGACATCTACGTCTTCCGCACCGCCGACGGGTCGCGCCGGTCGC TCGCCATCCGTGACGGCGGCTGGCCGAGCTGGGCCGACGAGACCACCGTCTTCTTCCACC GCCGGGACAGCGACGGTTGGTACGGCGTCTACCGCGCCGAGATCTCCGTCACCGGCGACG GGGTCGAAGCGGCGTCCGTGGAGCGAATCACCCCGCCGGGGTTCCACGCCTTCACGCCGG CCGCGTCGCCCGGCGCGCCGGGGCTCGTGGCGGTGGCGACACGGCGGGCGGGCTCCGACT ACCGCCACATCGAGGTGATCGACGTGAGCAGCGACGGCAAGAACGCCTACTTCGAGGTGA CCAGGCCCGTGGCACCGCGCGTGCACCACTTCAACCCATTCATCTCGCCGGACGGCGCGC GCGTCGGGTACCACCGGTGCCGGGGGAGAGGGAACGGCGACTCGCCGCTGCTGCTGGAGA ACATCAAGAGCCCAGGGTCACCGGACACGTTCTCGCTCTTCAGGATCGACGGCTCGTTCC CCTCCTTCTCGCACGACGGCAAGAAGATCGCGTTCGTCGGGCTGCCGGGGATGTACGTGG TGAACTCCGACGGCTCCGGTGGTCGCCGCAAGATCTTCTCCGGGAACGCCTTCTCGACGT CGTGGGACTGGAAGAGGAAAGGCGTGGTATACACCAGCATCGGGCCGGATTTCGCCAGCG AGACCACGGAGGTGGACGTGGTGGCCATCTCCCTCGGCGACGACGACGACGAGTCAACCA TCTCGATGAAGAAGCTGACCGTGGGAGGCGAGAACAACGCGTTCCCGTCGCCGTCGCCGG ACGGGAAGTGGGTGGTGTTCCGGTCGGGGAGATCCGGGAACAAGAACCTGTACATCATCG ACGCCGAGGACGGCGAGGCCGGCGGCATCCGGCGGCTGACGGAGGGGCCATGGTCGGACA CGATGTGCAACTGGTCACCCGACGGCGAGTGGATCGCCTTCGCCTCCGACCGCCATGCCC CGGGGAGCGGCAGCTTCGCCATCTACATGGTGCACCCCAATGGCACCGGGCTGCGGCGGG TGGTGCACAGCGGCGGCAGCGGCCGGACCAACCACCCATGGTTCAGCCCGGACTCCAAGA GCCTCGTCTTCACCTCCGACTACGCCGCCGTCTCCGCCGAGCCGGTCTCCAACCCTCACC ATTACCAGCCATACGGCGAGATCTTCACCGTCGACATCGACGGGTCCAACATCCGGCGGC TCACGCACAACTCGTTCGAGGACGGCACGCCGTCGTGGACGCCATACTTCCTGGAGCCCC GAGACGTCGGCGAGACGCTGCAAGCCTCGGGCAGGTGCGCGTTCCAGGATTGCCACTGGC TCAACATCCAAGATGCTGCCCAACCTGAAGAGCTCAACTATGGCAAGAGCTGCTGAGTGA AGCCATGGCACTGGCTGATCACGCTGAATTAAGCCAATAAACCATGGATATTGGAGTGCA TGAATGTAGATATAATACTGTTATGTAGTAGCATGAATCTACCAGGAATAAGATCATGTA CACTGATGCCATCTTCAGGGCAAACGATATCAGAATTGCTACATATCTAGTTTTTTTTTA TTGGCC