Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0837100-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:35177757:35183269:1 gene:Os03g0837100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A5 description:Similar to Cellulose synthase-6. (Os03t0837100-01);Similar to cDNA clone:J023086F23, full insert sequence. (Os03t0837100-02);Similar to cDNA clone:J023086F23, full insert sequence. (Os03t0837100-03)
Sequence	ATGGAGGCCAGCGCCGGGCTGGTCGCCGGCTCCCACAACCGGAACGAGCTCGTCGTCATC CGCCGCGACGGGGAGCCCGGGCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAG ATTTGCGGCGACGACGTCGGCCTCACCCCCGACGGCGAGCCCTTCGTCGCCTGCAACGAG TGCGCCTTCCCCGTCTGCCGCGACTGCTACGAGTACGAGCGCCGCGAGGGCACGCAGAAC TGCCCCCAGTGCAAGACCCGCTTCAAACGCCTCAAGGGTTGCGCCCGCGTCCCCGGCGAT GAGGAGGAGGAGGACGTCGACGACCTGGAGAACGAGTTCAACTGGAGGGACAAGACCGAC TCGCAGTATGTCGCCGAGTCCATGCTCCACGGCCACATGAGCTATGGCCGCGGCGGTGAC CTCGACGGCGTGCCGCAGCATTTCCAGCCAATCCCCAATGTTCCCCTCCTCACCAACGGG GAGATGGCTGATGACATCCCGCCGGAGCAGCACGCCCTTGTGCCGTCTTTCATGGGCGGC GGAGGAAAGAGGATCCACCCTCTTCCTTATGCGGATCCAAACCTTCCTGTGCAACCAAGA TCCATGGACCCGTCCAAGGATCTCGCCGCGTATGGGTATGGGAGTGTCGCGTGGAAAGAA AGAATGGAAAGCTGGAAGCAGAAGCAGGAGAGGTTACACCAGATGAGGAATGATGGCGGT GGTAAAGATTGGGACGGCGATGGCGATGATGCAGATCTACCACTAATGGATGAAGCTAGA CAGCCATTGTCCAGAAAGATTCCGATTTCTTCAAGCCTGGTCAATCCTTATAGGATGATT ATCATAATTCGGCTGGTGGTTCTGGGCTTCTTCTTCCACTATCGAGTGATGCATCCAGTG CCTGATGCATTTGCATTATGGCTCATATCCGTCATCTGTGAAATCTGGTTCGCCATGTCT TGGATTCTTGATCAGTTCCCAAAGTGGTTTCCTATTGAGAGGGAAACTTACCTTGACCGG TTGACATTGAGGTTTGACAAGGAAGGCCAGCAATCTCAACTCGCCCCAGTTGATTTTTTT GTCAGTACGGTTGATCCCATGAAGGAGCCTCCCTTGGTCACAGCAAATACTGTTCTGTCT ATCCTTGCGGTAGATTATCCGGTCGACAAGGTCTCTTGCTATGTTTCTGATGATGGGGCT GCCATGCTGACATTTGAAGCACTGTCTGAAACATCTGAATTTGCAAAGAAGTGGGTTCCT TTCTGCAAAAGGTACAGTCTCGAGCCTCGTGCCCCAGAATGGTACTTCCAACAGAAGATA GACTACCTGAAAGATAAGGTGGCACCAAACTTTGTCAGGGAGAGGAGAGCAATGAAGAGG GAATATGAGGAATTCAAGGTCAGAATCAATGCATTGGTTGCTAAAGCCCAGAAAGTTCCT GAGGAAGGATGGACAATGCAGGATGGAACTCCCTGGCCTGGAAACAACGTTCGTGATCAT CCTGGAATGATTCAGGTCTTCCTTGGCCAAAGTGGTGGCCATGATGTGGAAGGAAATGAA CTGCCTCGATTGGTTTATGTTTCAAGAGAAAAACGGCCAGGCTATAACCATCATAAGAAG GCTGGTGCTATGAACGCATTGGTCCGAGTCTCCGCTGTACTAACTAATGCTCCATATATG TTGAACTTGGATTGTGATCACTACATCAACAACAGCAAGGCTATAAAGGAAGCAATGTGT TTTATGATGGATCCCTTGGTAGGAAAGAAAGTTTGTTATGTGCAGTTCCCACAAAGATTC GATGGCATTGACCGTCATGATCGATATGCTAATAGGAATGTCGTCTTTTTCGATATCAAC ATGAAAGGTTTGGATGGTATTCAAGGCCCCATCTATGTCGGTACTGGATGTGTCTTTAGA AGACAGGCGCTGTATGGTTATGATGCCCCCAAATCAAAGAAACCACCATCAAGGACTTGC AACTGCTGGCCAAAGTGGTGCATTTGCTGTTGCTGCTTTGGTAACAGGACAAACAAGAAG AAGACTGCTAAACCTAAAACAGAGAAGAAAAAGAGGTTGTTTTTCAAGAGAGCAGAGAAT CAGTCGCCTGCATATGCTCTTGGTGAGATTGACGAAGGTGCTCCAGGAGCTGAAAATGAA AAGGCTGGTATTGTAAATCAACAGAAGTTAGAAAAGAAATTTGGTCAATCTTCCGTTTTT GTTGCGTCCACACTTCTTGAGAATGGTGGAACCCTGAAGAGTGCAAGCCCAGCATCACTC TTAAAGGAAGCTATACATGTCATCAGTTGTGGTTACGAGGACAAGACAGACTGGGGAAAA GAGATTGGCTGGATCTACGGATCCGTTACAGAGGATATTCTTACTGGGTTTAAGATGCAC TGCCATGGTTGGCGGTCGATTTACTGCATACCTAAGCGGGCTGCATTCAAAGGTTCTGCA CCTCTCAATCTTTCTGACCGTCTTCACCAGGTTCTTCGGTGGGCGCTTGGATCTATTGAA ATTTTCTTCAGCAACCATTGCCCTCTTTGGTATGGCTATGGAGGTGGATTGAAATGTTTG GAAAGATTTTCCTACATTAATTCCATCGTGTATCCTTGGACATCCATTCCACTATTGGCT TACTGTACATTGCCTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAGCTTACT AATATCGCCAGCCTTTGGTTCATGTCACTATTTATCTGCATTTTTGCTACGGGCATTCTG GAAATGAGATGGAGTGGTGTAGGCATCGATGATTGGTGGAGGAACGAGCAGTTTTGGGTC ATTGGAGGTGTCTCTTCACATCTCTTTGCTGTGTTCCAAGGACTTCTCAAGGTCATAGCT GGTATCGATACAAGCTTCACTGTGACATCAAAGGGTGGAGATGATGAAGAGTTCTCAGAG CTGTATACCTTCAAATGGACAACCTTGTTAATACCCCCTACCACTTTGCTCCTATTGAAC TTCATCGGGGTAGTGGCTGGCGTTTCCAACGCAATCAATAACGGATATGAATCATGGGGG CCGCTCTTTGGGAAGCTGTTCTTTGCATTTTGGGTGATTGTCCATCTGTATCCGTTCTTG AAGGGTTTGGTTGGAAGGCAAAACAGGACACCAACAATTGTCATTGTCTGGTCCATTCTG CTGGCTTCAATCTTCTCGCTCCTCTGGGTCCGGATTGATCCTTTCCTGGCAAAGAATGAC GGCCCTCTTCTGGAGGAGTGTGGTTTGGATTGCAACTAG

Peptide Sequence

PEP ID	Os03t0837100-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:35177757:35183269:1 gene:Os03g0837100 transcript:Os03t0837100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A5 description:Similar to Cellulose synthase-6. (Os03t0837100-01);Similar to cDNA clone:J023086F23, full insert sequence. (Os03t0837100-02);Similar to cDNA clone:J023086F23, full insert sequence. (Os03t0837100-03)
Sequence	MEASAGLVAGSHNRNELVVIRRDGEPGPKPVKHTNGQVCQICGDDVGLTPDGEPFVACNE CAFPVCRDCYEYERREGTQNCPQCKTRFKRLKGCARVPGDEEEEDVDDLENEFNWRDKTD SQYVAESMLHGHMSYGRGGDLDGVPQHFQPIPNVPLLTNGEMADDIPPEQHALVPSFMGG GGKRIHPLPYADPNLPVQPRSMDPSKDLAAYGYGSVAWKERMESWKQKQERLHQMRNDGG GKDWDGDGDDADLPLMDEARQPLSRKIPISSSLVNPYRMIIIIRLVVLGFFFHYRVMHPV PDAFALWLISVICEIWFAMSWILDQFPKWFPIERETYLDRLTLRFDKEGQQSQLAPVDFF VSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVP FCKRYSLEPRAPEWYFQQKIDYLKDKVAPNFVRERRAMKREYEEFKVRINALVAKAQKVP EEGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGGHDVEGNELPRLVYVSREKRPGYNHHKK AGAMNALVRVSAVLTNAPYMLNLDCDHYINNSKAIKEAMCFMMDPLVGKKVCYVQFPQRF DGIDRHDRYANRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKSKKPPSRTC NCWPKWCICCCCFGNRTNKKKTAKPKTEKKKRLFFKRAENQSPAYALGEIDEGAPGAENE KAGIVNQQKLEKKFGQSSVFVASTLLENGGTLKSASPASLLKEAIHVISCGYEDKTDWGK EIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIE IFFSNHCPLWYGYGGGLKCLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELT NIASLWFMSLFICIFATGILEMRWSGVGIDDWWRNEQFWVIGGVSSHLFAVFQGLLKVIA GIDTSFTVTSKGGDDEEFSELYTFKWTTLLIPPTTLLLLNFIGVVAGVSNAINNGYESWG PLFGKLFFAFWVIVHLYPFLKGLVGRQNRTPTIVIVWSILLASIFSLLWVRIDPFLAKND GPLLEECGLDCN

Transcript Sequence

Transcript ID	Os03t0837100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:35177757:35183269:1 gene:Os03g0837100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CELLULOSE SYNTHASE A5 description:Similar to Cellulose synthase-6. (Os03t0837100-01);Similar to cDNA clone:J023086F23, full insert sequence. (Os03t0837100-02);Similar to cDNA clone:J023086F23, full insert sequence. (Os03t0837100-03)
Sequence	CGCACAAGGAAGGAAACAAGCCGAAGAATCCACAGCATTCTCTCTTCCTCTCTCTTCTTC CCCCATTTTGCTCTCGCCGCCGCCCACGCCGTTGCTGCTCCGTCGTTGGTAGCCTCTGCT GCTACGAGGGCGTTGGGATCTGGAGATCTGGTAGGGAGGATTGCGGGATGGAGGCCAGCG CCGGGCTGGTCGCCGGCTCCCACAACCGGAACGAGCTCGTCGTCATCCGCCGCGACGGGG AGCCCGGGCCGAAGCCGGTGAAGCATACGAATGGGCAGGTGTGCCAGATTTGCGGCGACG ACGTCGGCCTCACCCCCGACGGCGAGCCCTTCGTCGCCTGCAACGAGTGCGCCTTCCCCG TCTGCCGCGACTGCTACGAGTACGAGCGCCGCGAGGGCACGCAGAACTGCCCCCAGTGCA AGACCCGCTTCAAACGCCTCAAGGGTTGCGCCCGCGTCCCCGGCGATGAGGAGGAGGAGG ACGTCGACGACCTGGAGAACGAGTTCAACTGGAGGGACAAGACCGACTCGCAGTATGTCG CCGAGTCCATGCTCCACGGCCACATGAGCTATGGCCGCGGCGGTGACCTCGACGGCGTGC CGCAGCATTTCCAGCCAATCCCCAATGTTCCCCTCCTCACCAACGGGGAGATGGCTGATG ACATCCCGCCGGAGCAGCACGCCCTTGTGCCGTCTTTCATGGGCGGCGGAGGAAAGAGGA TCCACCCTCTTCCTTATGCGGATCCAAACCTTCCTGTGCAACCAAGATCCATGGACCCGT CCAAGGATCTCGCCGCGTATGGGTATGGGAGTGTCGCGTGGAAAGAAAGAATGGAAAGCT GGAAGCAGAAGCAGGAGAGGTTACACCAGATGAGGAATGATGGCGGTGGTAAAGATTGGG ACGGCGATGGCGATGATGCAGATCTACCACTAATGGATGAAGCTAGACAGCCATTGTCCA GAAAGATTCCGATTTCTTCAAGCCTGGTCAATCCTTATAGGATGATTATCATAATTCGGC TGGTGGTTCTGGGCTTCTTCTTCCACTATCGAGTGATGCATCCAGTGCCTGATGCATTTG CATTATGGCTCATATCCGTCATCTGTGAAATCTGGTTCGCCATGTCTTGGATTCTTGATC AGTTCCCAAAGTGGTTTCCTATTGAGAGGGAAACTTACCTTGACCGGTTGACATTGAGGT TTGACAAGGAAGGCCAGCAATCTCAACTCGCCCCAGTTGATTTTTTTGTCAGTACGGTTG ATCCCATGAAGGAGCCTCCCTTGGTCACAGCAAATACTGTTCTGTCTATCCTTGCGGTAG ATTATCCGGTCGACAAGGTCTCTTGCTATGTTTCTGATGATGGGGCTGCCATGCTGACAT TTGAAGCACTGTCTGAAACATCTGAATTTGCAAAGAAGTGGGTTCCTTTCTGCAAAAGGT ACAGTCTCGAGCCTCGTGCCCCAGAATGGTACTTCCAACAGAAGATAGACTACCTGAAAG ATAAGGTGGCACCAAACTTTGTCAGGGAGAGGAGAGCAATGAAGAGGGAATATGAGGAAT TCAAGGTCAGAATCAATGCATTGGTTGCTAAAGCCCAGAAAGTTCCTGAGGAAGGATGGA CAATGCAGGATGGAACTCCCTGGCCTGGAAACAACGTTCGTGATCATCCTGGAATGATTC AGGTCTTCCTTGGCCAAAGTGGTGGCCATGATGTGGAAGGAAATGAACTGCCTCGATTGG TTTATGTTTCAAGAGAAAAACGGCCAGGCTATAACCATCATAAGAAGGCTGGTGCTATGA ACGCATTGGTCCGAGTCTCCGCTGTACTAACTAATGCTCCATATATGTTGAACTTGGATT GTGATCACTACATCAACAACAGCAAGGCTATAAAGGAAGCAATGTGTTTTATGATGGATC CCTTGGTAGGAAAGAAAGTTTGTTATGTGCAGTTCCCACAAAGATTCGATGGCATTGACC GTCATGATCGATATGCTAATAGGAATGTCGTCTTTTTCGATATCAACATGAAAGGTTTGG ATGGTATTCAAGGCCCCATCTATGTCGGTACTGGATGTGTCTTTAGAAGACAGGCGCTGT ATGGTTATGATGCCCCCAAATCAAAGAAACCACCATCAAGGACTTGCAACTGCTGGCCAA AGTGGTGCATTTGCTGTTGCTGCTTTGGTAACAGGACAAACAAGAAGAAGACTGCTAAAC CTAAAACAGAGAAGAAAAAGAGGTTGTTTTTCAAGAGAGCAGAGAATCAGTCGCCTGCAT ATGCTCTTGGTGAGATTGACGAAGGTGCTCCAGGAGCTGAAAATGAAAAGGCTGGTATTG TAAATCAACAGAAGTTAGAAAAGAAATTTGGTCAATCTTCCGTTTTTGTTGCGTCCACAC TTCTTGAGAATGGTGGAACCCTGAAGAGTGCAAGCCCAGCATCACTCTTAAAGGAAGCTA TACATGTCATCAGTTGTGGTTACGAGGACAAGACAGACTGGGGAAAAGAGATTGGCTGGA TCTACGGATCCGTTACAGAGGATATTCTTACTGGGTTTAAGATGCACTGCCATGGTTGGC GGTCGATTTACTGCATACCTAAGCGGGCTGCATTCAAAGGTTCTGCACCTCTCAATCTTT CTGACCGTCTTCACCAGGTTCTTCGGTGGGCGCTTGGATCTATTGAAATTTTCTTCAGCA ACCATTGCCCTCTTTGGTATGGCTATGGAGGTGGATTGAAATGTTTGGAAAGATTTTCCT ACATTAATTCCATCGTGTATCCTTGGACATCCATTCCACTATTGGCTTACTGTACATTGC CTGCCATCTGTTTGCTGACAGGAAAATTTATCACTCCAGAGCTTACTAATATCGCCAGCC TTTGGTTCATGTCACTATTTATCTGCATTTTTGCTACGGGCATTCTGGAAATGAGATGGA GTGGTGTAGGCATCGATGATTGGTGGAGGAACGAGCAGTTTTGGGTCATTGGAGGTGTCT CTTCACATCTCTTTGCTGTGTTCCAAGGACTTCTCAAGGTCATAGCTGGTATCGATACAA GCTTCACTGTGACATCAAAGGGTGGAGATGATGAAGAGTTCTCAGAGCTGTATACCTTCA AATGGACAACCTTGTTAATACCCCCTACCACTTTGCTCCTATTGAACTTCATCGGGGTAG TGGCTGGCGTTTCCAACGCAATCAATAACGGATATGAATCATGGGGGCCGCTCTTTGGGA AGCTGTTCTTTGCATTTTGGGTGATTGTCCATCTGTATCCGTTCTTGAAGGGTTTGGTTG GAAGGCAAAACAGGACACCAACAATTGTCATTGTCTGGTCCATTCTGCTGGCTTCAATCT TCTCGCTCCTCTGGGTCCGGATTGATCCTTTCCTGGCAAAGAATGACGGCCCTCTTCTGG AGGAGTGTGGTTTGGATTGCAACTAGAAGGTCAGCATGTGAACTTCCCCAATCAAGTGTG TGCTTGAAGAAGTATTTTTGCAGGTGTTTGTGCCCATATTTTTTTTTCATTTTTTCCTCT GTAGATAGAAACACGAAAAAAAAACTTGCATTTCTTTTGTTCCATGGTGGTAGCTCAGCC TCATATCTGCAATATTGAGCAAACGGGAGGCTGCGACAACCTTGTGCAGTTCGGCCACGA AAAATACAGTGAATGCCAGTGTTTGATTGTTCAGCATTCTTTATTAGTTTGGTGGAAATT TGATCGGGTGAGCCGAACAGAAAGTTGCTTGATTCTGCATTGCTCTCCACCATCTACAAA AACTCGGTACTTGTTTCTCAATAAGGCAGGAATGGATCTGCCGTCTGGAATAGAGGAAGA TGCACATTATTTATGTAGCGAGTTAAAATATGCCTGAAGGGCTTGTTCATTCCTTGTTCC TCTTTCTATTTCATTTTTTTGTCCTTGTTAGAACAAATAGATCTCTAGTTTTAGTGATTT AGCCCATCCGGTGTTGTAATTTGTAAAGGTGCCCCTTTGTTCAATACTTCAATTGCGTAA TGTCCC