Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0836300-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:35140216:35141197:1 gene:Os03g0836300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os03t0836300-01)
Sequence

ATGGCTTTCTGGGAGGATTGGGGCAAGGGCGACTGCGACTGCGGCTGGAAGAAGTGCCTC
ATCTGGACGGCGGCCATCGCCGGCGTGGGCGGGCTCATCGTGCTCCTCGTCTTCGCCTTC
GCCCTCGTGTTCCCGCCCAAGGCCACCGCCGACGACGCCGTGCTGCTCCGCCTCGCGCTG
TCCCCGGGCTCGCCGCCGTCCAACTCCACCGTCTCCTACAACGCCACGGTGACGCTGTCG
CTGCGTAACCCGAACCTGTACCGCGGCATCAGCTACGACCCCGTCGCGGTGGCCTTCTCC
TTCAACGGCACGCGCTTCGACGAGTCCGCCACCGTGCCGGCGTTCTACCATCGGCCGAGG
AAGACGGCGACGTTCCACGTCACGGTGGGCGGCGCGGGCAAGCCCGTCCCCAAGCTCACC
GCGGCGGGGGTGGCGGCGTTCAGGGCGGAGAACGCGACGGGGAGGTTCGAGGTGGAGGTG
AGGCTGGACACGGTGATGCAGTACAAGGCGAGGAAGGCGCGGTGCCCGCTCGCCGTCATC
TGCCCGCTGCAGCTGCAGCTCGTCGACCCGGACGTCGCCGCCACCGCGTTCCAGAGGACC
AAGTGCACCGTCCTCCGGGCCAAGAAGTCCGGATGCTAG

Peptide Sequence

PEP ID

Os03t0836300-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:35140216:35141197:1 gene:Os03g0836300 transcript:Os03t0836300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os03t0836300-01)
Sequence

MAFWEDWGKGDCDCGWKKCLIWTAAIAGVGGLIVLLVFAFALVFPPKATADDAVLLRLAL
SPGSPPSNSTVSYNATVTLSLRNPNLYRGISYDPVAVAFSFNGTRFDESATVPAFYHRPR
KTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVRLDTVMQYKARKARCPLAVI
CPLQLQLVDPDVAATAFQRTKCTVLRAKKSGC

Transcript Sequence

Transcript ID

Os03t0836300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:35140216:35141197:1 gene:Os03g0836300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os03t0836300-01)
Sequence

AGACCTGACCCAAACGGAAGTCTTCTCCTCTCCCCTTGCTCAGTTCATTCAGTTGGCCTC
CTCGATCCACCTCCAGCCTCTCAATTCAATCGCCATTGACAACAATCCGCGAGGCGAGGT
GCTTAGTTTCTCAGCCAAGACTCGAGTCGACGCCGGCCATGGCTTTCTGGGAGGATTGGG
GCAAGGGCGACTGCGACTGCGGCTGGAAGAAGTGCCTCATCTGGACGGCGGCCATCGCCG
GCGTGGGCGGGCTCATCGTGCTCCTCGTCTTCGCCTTCGCCCTCGTGTTCCCGCCCAAGG
CCACCGCCGACGACGCCGTGCTGCTCCGCCTCGCGCTGTCCCCGGGCTCGCCGCCGTCCA
ACTCCACCGTCTCCTACAACGCCACGGTGACGCTGTCGCTGCGTAACCCGAACCTGTACC
GCGGCATCAGCTACGACCCCGTCGCGGTGGCCTTCTCCTTCAACGGCACGCGCTTCGACG
AGTCCGCCACCGTGCCGGCGTTCTACCATCGGCCGAGGAAGACGGCGACGTTCCACGTCA
CGGTGGGCGGCGCGGGCAAGCCCGTCCCCAAGCTCACCGCGGCGGGGGTGGCGGCGTTCA
GGGCGGAGAACGCGACGGGGAGGTTCGAGGTGGAGGTGAGGCTGGACACGGTGATGCAGT
ACAAGGCGAGGAAGGCGCGGTGCCCGCTCGCCGTCATCTGCCCGCTGCAGCTGCAGCTCG
TCGACCCGGACGTCGCCGCCACCGCGTTCCAGAGGACCAAGTGCACCGTCCTCCGGGCCA
AGAAGTCCGGATGCTAGCTAACCTACCTACCTGCAATTTTCTCGAGATTTCAGTTTTCTT
TTGCTTGTTCTTGCTTGCTGGAGATTGTTGCCATGTATGATTGGAAGATTGCATTTTGGA
TTAGAAATTGTAAGATTGGTTATTGTGTAGTGTGTACTGTGTACTGCTACTCATCTGGAG
AAATTCGGGACAATTGGATATC