Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0833800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:35037354:35041627:1 gene:Os03g0833800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os03t0833800-01)
Sequence

ATGAGGAGATCTGCATCTCTACTCCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACT
CAATGGTCCAATGTATCCAGTACATACTGCAAGGACATGGCATCAAGCGTATATCGACCC
CACAGTGTCACAATAACTGAATTTGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAA
GCATTCCAGAACGCAATCTTCTACCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTC
TTCGTGCCTGCGGGAAGGTGGCTGACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTG
TCACTGGATAAGGATGCAGAAATAATTGGATCTCCGGATTCATCCGATTGGCCAGTCATT
GATCCTCTTCCATCCTATGGGCGAGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTA
ATTTTTGGAACTAATCTAACAGATGTAATAATTACTGGCGCTAATGGTACCATTGATGGC
CAGGGAGCCATTTGGTGGGATTGGTTCCACAGCAACACACTGAATTATACTAGGCCACAT
CTTGTTGAGTTGATGTACTCCACCGATGTTGTTATATCCAATTTAACCTTCAAGAACTCA
CCGTTTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATC
CTAGCGCCCCTGAATTCACCGAACACTGATGGCATTGATCCAGATTCGTCCACAAATGTC
TGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGG
GATGAGTATGGCATTTCCTTTGCTCGTCCTAGCACAAACATCAGTATCAGCAACATCACA
GGAGAGACAAGGGGTGGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCC
GAAGTCCGGGCTGAGGGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACC
GCTCCAGGGCGTGGAGGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAAT
GTTTCGATGGCCATCAGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGAT
AGAAATGCTCTCCCAATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTT
GGTGTCGCTGGCATCTTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCC
AATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTAT
TCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCA
ATTTGCTATGATGGTGGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTG
TCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAG

Peptide Sequence

PEP ID

Os03t0833800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:35037354:35041627:1 gene:Os03g0833800 transcript:Os03t0833800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os03t0833800-01)
Sequence

MRRSASLLRVLLVFITMVGTQWSNVSSTYCKDMASSVYRPHSVTITEFGAVGDGVTLNTK
AFQNAIFYLNSFADKGGAQLFVPAGRWLTGSFSLISHLTLSLDKDAEIIGSPDSSDWPVI
DPLPSYGRGRELPGKRHQSLIFGTNLTDVIITGANGTIDGQGAIWWDWFHSNTLNYTRPH
LVELMYSTDVVISNLTFKNSPFWNIHPVYCSQVLVQHVTILAPLNSPNTDGIDPDSSTNV
CIDHCYVRNGDDVIVIKSGWDEYGISFARPSTNISISNITGETRGGAGIAFGSEMSGGIS
EVRAEGLRIVNSMHGIRIKTAPGRGGYVKNVYISDVSMDNVSMAIRITGNFGEHPDDKYD
RNALPMISNITIENVVGVNVGVAGILEGIEGDNFSSICLSNVSLSVQSMHPWNCSLIEGY
SNSVIPESCEQLRTDCGQTPICYDGGSSSAIHAQAARHRLSSASRLLNPLLKLAML

Transcript Sequence

Transcript ID

Os03t0833800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:35037354:35041627:1 gene:Os03g0833800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectin lyase fold/virulence factor domain containing protein. (Os03t0833800-01)
Sequence

AGCTTGGCTCGCCTCTGCTCCGCTTCGCCTTTGCTCCGACCCGGTCGGCCTCGCCGCCGT
CGCCGCCGCCACCGCATCACGCGCGCGCGCGCGCGACGGCGCGAGCGCACGGGTGAGGTG
AGAGAGGGGTAGTAGAGCAGCAGCCGCCCCCGACCGCCCACGCCCGGGCCGGGTGGTGGA
GCACACCGTGGCATGATTGGGTCCATGGCCTCCTGACCCCGCCTCCCTCTCCTCCTCCTC
TGCTCCCCTTTTGCTGCTGTTGCTGCTTCCTACTCTCACTCTGCTTCTGCTGCTCAATCC
ACCTGCTCCTCTCCTTCTCTTCTCTCTCCCGAGCGGCCGAGAAGAGGCGAGGGGAGAAGG
GAGGACTTGATTCTTGCTTGTTGCTGATCCATTCTTTCTTGCTCTGCTCTGCTCTTGTGT
GGTGTGTGTGTCCAGGCTTGCCGCATTAAAGGAGAGGTGGTTTTTGTTGACCCTGTTTAG
CAGCAGCAGCAGCAGCAGCGACCAAGATCCGTCTCGTCGGGGAAGATGAGGAGATCTGCA
TCTCTACTCCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACTCAATGGTCCAATGTA
TCCAGTACATACTGCAAGGACATGGCATCAAGCGTATATCGACCCCACAGTGTCACAATA
ACTGAATTTGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAAGCATTCCAGAACGCA
ATCTTCTACCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTCTTCGTGCCTGCGGGA
AGGTGGCTGACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTGTCACTGGATAAGGAT
GCAGAAATAATTGGATCTCCGGATTCATCCGATTGGCCAGTCATTGATCCTCTTCCATCC
TATGGGCGAGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTAATTTTTGGAACTAAT
CTAACAGATGTAATAATTACTGGCGCTAATGGTACCATTGATGGCCAGGGAGCCATTTGG
TGGGATTGGTTCCACAGCAACACACTGAATTATACTAGGCCACATCTTGTTGAGTTGATG
TACTCCACCGATGTTGTTATATCCAATTTAACCTTCAAGAACTCACCGTTTTGGAATATC
CATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATCCTAGCGCCCCTGAAT
TCACCGAACACTGATGGCATTGATCCAGATTCGTCCACAAATGTCTGCATTGATCATTGT
TATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATGAGTATGGCATT
TCCTTTGCTCGTCCTAGCACAAACATCAGTATCAGCAACATCACAGGAGAGACAAGGGGT
GGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAG
GGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGA
GGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATC
AGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCA
ATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATC
TTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGT
GTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATC
CCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGT
GGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGA
TTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTT
ATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGAT
TGTTTTTTTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAATGTT
GGTGTACCATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCT
TTTGTTGGGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGT
CATCAAAATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTCAGTTTTAATC