Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0831900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:34941643:34944635:1 gene:Os03g0831900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os03t0831900-01)
Sequence

ATGTCTAGCAATCCGGTTGGTGTCGATAACACTTTCCGGAGGAAATTTGACAAGGAGGAG
TACTTGGAACGAGCTCGGCAGAGGGAGCGGGAGGAGAAGGAAGAAGCGCGGAAAGGCAAG
GAAAAGGGCCCTCCTGTGCAAAGGCAACCTTTGAAGCATAGGGACTATGAAGTTGACCTT
GAGTCCCGTCTTGGCAAGACTCAGGTGGTAACTCCAATTGCACCTTTGAGTCAACAGGCT
GGTTACTATTGTAAAGTTTGTGAATGTGTCGTTAAAGATTCAGCTAACTATTTGGACCAT
ATAAATGGCAAGAAACATCAGAGAGCATTGGGCATGTCTATGCGTGTTGAGAGAGCATCA
CTTGAACAGGTTCAGAAAAGGTTTGAGTCACTTAAGAAGAGGAAAGACCCAGGTAGCTTT
AGTGAACAAGATTTGGATGAGAGAATATTGAAACAGCAGCAAGAGGATGAGGAGAGGAAG
CGCCAACGCAAAGAAAAGAAGAAAGAGAAAAAGAAAGAGCTGGCTGCCCAGAATGAACCT
GAGGAGGACATAGACCCTGATGTTGCTGCCATGATGGGTTTCGGAGGCTTCCGTTCCTCA
AAGAAATGA

Peptide Sequence

PEP ID

Os03t0831900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:34941643:34944635:1 gene:Os03g0831900 transcript:Os03t0831900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os03t0831900-01)
Sequence

MSSNPVGVDNTFRRKFDKEEYLERARQREREEKEEARKGKEKGPPVQRQPLKHRDYEVDL
ESRLGKTQVVTPIAPLSQQAGYYCKVCECVVKDSANYLDHINGKKHQRALGMSMRVERAS
LEQVQKRFESLKKRKDPGSFSEQDLDERILKQQQEDEERKRQRKEKKKEKKKELAAQNEP
EEDIDPDVAAMMGFGGFRSSKK

Transcript Sequence

Transcript ID

Os03t0831900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:34941643:34944635:1 gene:Os03g0831900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, U1-type domain containing protein. (Os03t0831900-01)
Sequence

AAAGGGAAAAAAAAAGTAGGGTTCCGGCGACCGGGCTACCGGCGGCGAGAAGGCGCAGCT
CCGCACCCACCGGCCACCGTGAGGCCTGAGCCCCCCGCCCCCTAACGCCGACGGCCTACA
CCCAGAGGCGACTCGGCAAGCGGGCTGTGGCGCTAGGCGGCAGCGGGGGCGGCGGCCGCG
ACCACGACCAGCAAGGAGGAAGGGCTCTCCTCTAATCCTCTCCGTCTCTCCAAGAATCCA
ACCAGGTAGCAGCTGCTTGGCAGTGGGCAGAGCAACATGTCTAGCAATCCGGTTGGTGTC
GATAACACTTTCCGGAGGAAATTTGACAAGGAGGAGTACTTGGAACGAGCTCGGCAGAGG
GAGCGGGAGGAGAAGGAAGAAGCGCGGAAAGGCAAGGAAAAGGGCCCTCCTGTGCAAAGG
CAACCTTTGAAGCATAGGGACTATGAAGTTGACCTTGAGTCCCGTCTTGGCAAGACTCAG
GTGGTAACTCCAATTGCACCTTTGAGTCAACAGGCTGGTTACTATTGTAAAGTTTGTGAA
TGTGTCGTTAAAGATTCAGCTAACTATTTGGACCATATAAATGGCAAGAAACATCAGAGA
GCATTGGGCATGTCTATGCGTGTTGAGAGAGCATCACTTGAACAGGTTCAGAAAAGGTTT
GAGTCACTTAAGAAGAGGAAAGACCCAGGTAGCTTTAGTGAACAAGATTTGGATGAGAGA
ATATTGAAACAGCAGCAAGAGGATGAGGAGAGGAAGCGCCAACGCAAAGAAAAGAAGAAA
GAGAAAAAGAAAGAGCTGGCTGCCCAGAATGAACCTGAGGAGGACATAGACCCTGATGTT
GCTGCCATGATGGGTTTCGGAGGCTTCCGTTCCTCAAAGAAATGAATGATCCATGGCGGC
CTTTTTTTGTGACCTGTGGTTTCTTTCAGGTCGAAGAGTATATGCACCTGGATTACAATA
TATATTTGTTTCTAAGGAACCAGGACAAGAGTTTTGTGCACCTCTTGATCCAAAGCTGCG
TGGAAGTGATTGAAAATAACTTTTGTAATCGCTACCAGATAGTATTTTATCTGTAAGGAT
GCATGAGATGTCGAAACAAGTTTAATCTGTGTATTTCGGTATCCAAGAGTGAATGGTGAC
CTTGCTGTAATTCGATTCTCGCTTATGTGAATGATTTCTGAAGTGTTAAAATT