Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0828500-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:34798312:34800760:1 gene:Os03g0828500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MAN4 description:Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78). (Os03t0828500-01)
Sequence	ATGAGTTCTTGCGCTTTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGC GATGGCATGGTGGCCGTGGACGGCACGCAGTTCGTGGTGGACTGCGGCAGGACGATCTTC TTCAGCGGGTTCAACGCGTACTGGCTGATGATGATGGCGGCCGACCCGGCGCTGCGCGGC GCAGTGGCGACGGCGTTCCAGCAGGCATCGGCGCACGGGCTCAACCTGGCAAGAACGTGG GCCTTCAGCGACGGCGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACAACGAGACC ATGTTCCAGGGGCTGGACTTTGTGATCGCCGAAGCAAGGCGGCACGGTATATACCTTCTC CTCTGCCTGACCAACAACTTTGACAATTTTGGAGGCAAGCGGCAGTACGTGCGGTGGGCG GGGGACGCCGGCCACAACCTCACCTCCGACGACGACTTCTTCACCAGCACCATCGTCAAG TCCTACTTCAAGAACCACGTCAAGACGGTGCTGACGAGGGTGAACACCCTGACGGGCGTG GCGTACAAGGACGACCCCACCATCTTCGCCTGGGAGCTCATGAACGAGCCGCGATGCTAC GCCGACCCAACCGGCGCCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAG AGCGTCGACGGCCGGCACCTGGTGACACCCGGGCTGGAGGGGTTCTACGGCGCCGGCGAG CACGAGAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTCGCCACG CACCGCACCGCCGCCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTATGG GGCTCCAGCGCCGACGAGCAGGCCACTTTCTTCCGGAACTGGACGCGCTCCCACATTGAC GCCACGGCGGCGTACCTCGGCATGCCGCTTCTCGTCACCGAGTACGGCAAGTTCCTCTGG AAGGAGGTCGGCGCCAACAAGGCGCAGAGGAACTACTTCCTCGACTTGGTGCTCGACGCC ATCTACGCCTCGGCATCGCGCGGTGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTG CTCGACGGTGACATCGTCGCTGGCATGGACAGCCTCAGGGACGGGTACGAGATCATACTC GCCGAGGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCGGAGCAGCTGGCTGCCCTC AATGGCCAGGACGCGGATGTGCTTTGCCGCCGGGCAAGCTCTCACCGGAGGACGCGTCTA GGCAACTCGCTTAGCTGCGGCGGCGGCGACACCCTTGAACTGCTCCTCCGGATGGTCTTG GCTTGTTTCGTCTCTTTGTCCAGATCGATCTCTTCATTTATTGTACAGAATTTCATTCTT TTGTGA

Peptide Sequence

PEP ID	Os03t0828500-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:34798312:34800760:1 gene:Os03g0828500 transcript:Os03t0828500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MAN4 description:Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78). (Os03t0828500-01)
Sequence	MSSCALVQRPPPWRAAVAPGDGMVAVDGTQFVVDCGRTIFFSGFNAYWLMMMAADPALRG AVATAFQQASAHGLNLARTWAFSDGGDQPLQSSPGVYNETMFQGLDFVIAEARRHGIYLL LCLTNNFDNFGGKRQYVRWAGDAGHNLTSDDDFFTSTIVKSYFKNHVKTVLTRVNTLTGV AYKDDPTIFAWELMNEPRCYADPTGAMVQAWVEEMAPYVKSVDGRHLVTPGLEGFYGAGE HESKELNPWGIYYGTNYVATHRTAAVDFATIHLYPDVWLWGSSADEQATFFRNWTRSHID ATAAYLGMPLLVTEYGKFLWKEVGANKAQRNYFLDLVLDAIYASASRGGPLVGGAFWQLL LDGDIVAGMDSLRDGYEIILAEDSRAASIIGEHSEQLAALNGQDADVLCRRASSHRRTRL GNSLSCGGGDTLELLLRMVLACFVSLSRSISSFIVQNFILL

Transcript Sequence

Transcript ID	Os03t0828500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:34798312:34800760:1 gene:Os03g0828500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MAN4 description:Similar to (1-4)-beta-mannan endohydrolase precursor (EC 3.2.1.78). (Os03t0828500-01)
Sequence	CAATCTAATGCTAAATTTATTGTATTACCATTCTATAACTTTTGTCTAACACCCCTGGTT TAAAATTTTCATGTGGAACCTGCTATGGATTGGTTGGGATATTTTCATGAGATCTCTTCA TCAAAGCATGATCTGTGCTGTTATTACAATATAAATGGTGCACGTTGCTCTTGTTTACAC TTATCTGTGATTTGTTAATCTTCTGTTAAACAATTTGCTCCCTATGTTTGTCCTGCCCTG AAATCTGGACTTGTTTAGCACAAATGGTGCATTTTCTGAGACATGTGAATGGCTTTATCT CTAGGTCTATGGTTTAATTTGGCGTAGGTTGATTTTTGATTCTATACTTTTGTTTCCCTA TCATTTGACGCTTTACACACAAAAAAAAAAACTTCACCGTTATTGACTGACTGGCATTGA ATATGAAGCATCTAGCTGTAATAGTTTCTCAGCCATTAGTATGGTTACGAGTTGTTATGC CATACTGATTGTATTTATCCTTTTTTTCCTGGAGTGGGCAAGGGAAGCTGTTTTTGTTTT TATTCATCCTCAGTAAAAATTTTCATCTAGATCAGATTATGTTTCCTTTGTTTGCAAGTG ATGTTTAAAAGAGAAAAAAAAATAACATGTGGGGGCTAAATCAGTGAACAATATAAAATT TTTCATGAAATGCTGGTGAAAAGCAGATAAGGTGTGGCTTGAGCATAGTAAGTTTTGACC TATAGTGAGGCTGTACAAATCTTCTGATGTCAATCATCTTGATAATGATAAATGCATGAG TTCTTGCGCTTTAGTTCAAAGACCTCCACCCTGGCGCGCTGCCGTGGCGCCTGGCGATGG CATGGTGGCCGTGGACGGCACGCAGTTCGTGGTGGACTGCGGCAGGACGATCTTCTTCAG CGGGTTCAACGCGTACTGGCTGATGATGATGGCGGCCGACCCGGCGCTGCGCGGCGCAGT GGCGACGGCGTTCCAGCAGGCATCGGCGCACGGGCTCAACCTGGCAAGAACGTGGGCCTT CAGCGACGGCGGCGACCAGCCGCTGCAGTCGTCGCCGGGCGTCTACAACGAGACCATGTT CCAGGGGCTGGACTTTGTGATCGCCGAAGCAAGGCGGCACGGTATATACCTTCTCCTCTG CCTGACCAACAACTTTGACAATTTTGGAGGCAAGCGGCAGTACGTGCGGTGGGCGGGGGA CGCCGGCCACAACCTCACCTCCGACGACGACTTCTTCACCAGCACCATCGTCAAGTCCTA CTTCAAGAACCACGTCAAGACGGTGCTGACGAGGGTGAACACCCTGACGGGCGTGGCGTA CAAGGACGACCCCACCATCTTCGCCTGGGAGCTCATGAACGAGCCGCGATGCTACGCCGA CCCAACCGGCGCCATGGTGCAGGCGTGGGTGGAGGAGATGGCGCCGTACGTGAAGAGCGT CGACGGCCGGCACCTGGTGACACCCGGGCTGGAGGGGTTCTACGGCGCCGGCGAGCACGA GAGCAAGGAGCTCAACCCGTGGGGCATCTACTACGGCACCAACTACGTCGCCACGCACCG CACCGCCGCCGTCGACTTCGCCACCATCCACCTCTACCCGGACGTCTGGCTATGGGGCTC CAGCGCCGACGAGCAGGCCACTTTCTTCCGGAACTGGACGCGCTCCCACATTGACGCCAC GGCGGCGTACCTCGGCATGCCGCTTCTCGTCACCGAGTACGGCAAGTTCCTCTGGAAGGA GGTCGGCGCCAACAAGGCGCAGAGGAACTACTTCCTCGACTTGGTGCTCGACGCCATCTA CGCCTCGGCATCGCGCGGTGGCCCGCTCGTCGGCGGCGCGTTCTGGCAGCTGCTGCTCGA CGGTGACATCGTCGCTGGCATGGACAGCCTCAGGGACGGGTACGAGATCATACTCGCCGA GGACAGCCGCGCCGCGAGCATCATCGGCGAGCACTCGGAGCAGCTGGCTGCCCTCAATGG CCAGGACGCGGATGTGCTTTGCCGCCGGGCAAGCTCTCACCGGAGGACGCGTCTAGGCAA CTCGCTTAGCTGCGGCGGCGGCGACACCCTTGAACTGCTCCTCCGGATGGTCTTGGCTTG TTTCGTCTCTTTGTCCAGATCGATCTCTTCATTTATTGTACAGAATTTCATTCTTTTGTG ATTTGTTCCATGCATCCATCTTCATGGGTATAGCTGTTCGTTGGCACATGTTGCAACTGT AACTAGGACAAATTTTCAGGATTTGTTCAAGATGATTGTCCT