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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0828100-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:34785473:34787172:1 gene:Os03g0828100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL18 description:Similar to 50S ribosomal protein L18, chloroplastic. (Os03t0828100-01);Similar to 50S ribosomal protein L18. (Os03t0828100-02)
Sequence

ATGCTCGCCTCGCCGGCGCTCGCCGGCGCGCGCGCCTTCGCGGCGACCGTGTCCGGGAGC
CTCGGCATCCCCATTCCGGCCATCTCCGCGCCCTCGCCCTCGCAGGCGCGGCGGCGGGCC
TCTCTCGTCGTCGTTGCAAAGGTCAAGGTGTCCACTCCCCAGGCCGACCGCATCGCCCGC
CATGTCCGCCTCCGCAAGAAGGTTAGTGGCACCACGGAGAGGCCAAGACTCAGTGTTTTC
CGCTCAAACAAACATTTATATGCTCAAGTGATTGACGATACAAAGTCATGCACTCTGGTT
TCAGCTTCCACAATGCACAAGTCTCTTTCAAAGGACTTGGAATACTCGGCAGGGCCAACA
GTTGAAGTGGCACAAAAGATTGGTGAAGTGATTGCCAAGTCTTGCTTGGAGAAAGGAATT
ACCAAAGTTGTTTTTGACCGGGGTGGTTTCCTCTACCATGGTCGCATTAAAGCTCTGGCT
GATGCTGCTAGAGAGAATGGGCTTGATTTCTGA

Peptide Sequence

PEP ID

Os03t0828100-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:34785473:34787172:1 gene:Os03g0828100 transcript:Os03t0828100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL18 description:Similar to 50S ribosomal protein L18, chloroplastic. (Os03t0828100-01);Similar to 50S ribosomal protein L18. (Os03t0828100-02)
Sequence

MLASPALAGARAFAATVSGSLGIPIPAISAPSPSQARRRASLVVVAKVKVSTPQADRIAR
HVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPT
VEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF

Transcript Sequence

Transcript ID

Os03t0828100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:34785473:34787172:1 gene:Os03g0828100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL18 description:Similar to 50S ribosomal protein L18, chloroplastic. (Os03t0828100-01);Similar to 50S ribosomal protein L18. (Os03t0828100-02)
Sequence

AAAGCCATTGGGCTCGTCGGAGAGACAAGTAGAGAGCAGCGTAGTCGCCGCACTTAGCCA
TGCTCGCCTCGCCGGCGCTCGCCGGCGCGCGCGCCTTCGCGGCGACCGTGTCCGGGAGCC
TCGGCATCCCCATTCCGGCCATCTCCGCGCCCTCGCCCTCGCAGGCGCGGCGGCGGGCCT
CTCTCGTCGTCGTTGCAAAGGTCAAGGTGTCCACTCCCCAGGCCGACCGCATCGCCCGCC
ATGTCCGCCTCCGCAAGAAGGTTAGTGGCACCACGGAGAGGCCAAGACTCAGTGTTTTCC
GCTCAAACAAACATTTATATGCTCAAGTGATTGACGATACAAAGTCATGCACTCTGGTTT
CAGCTTCCACAATGCACAAGTCTCTTTCAAAGGACTTGGAATACTCGGCAGGGCCAACAG
TTGAAGTGGCACAAAAGATTGGTGAAGTGATTGCCAAGTCTTGCTTGGAGAAAGGAATTA
CCAAAGTTGTTTTTGACCGGGGTGGTTTCCTCTACCATGGTCGCATTAAAGCTCTGGCTG
ATGCTGCTAGAGAGAATGGGCTTGATTTCTGAAACCTCCAAATGTTTGTTCATATCTCCA
GAATCACTTGTTACTTTCTTTTTCGCCCACCTGTCGAACAGAGTTTTTCTTTGTAGTAAT
TTGATTTGCTCTGCAGGCTTGGCT