Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0825700-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:34680009:34687904:1 gene:Os03g0825700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEFECTIVE IN EXINE PATTERN FORMATION 1, Defective in Exine Formation 1 description:Ca<sup>2+</sup> binding protein, Regulation of tapetal cell degradation and pollen formation (Os03t0825700-01)
Sequence	ATGCGTCCCCTCCTCGCCTTCGCGGCGGTATGCGCCCTTCTCGTGGCTGCCGCAGCGCCG GCGGCCGCGGAGGAGGAGAAGGCGAACAAGTTCCGGCAGCGCGAGGCCACCGACGACATG CTTGGATACCCCCACCTTGATGAAGATGCTTTATTGAAGACCAAGTGTCCAAAACATGTA GAGCTGAGATGGCAGACTGAAGTTAGTTCCAGCATTTATGCAACTCCGTTGATCGCTGAT ATCAACAGCGATGGAAAGTTGGAAGTAGTGGTGCCATCATTTGTTCATTACCTGGAAGTT CTTGAAGGCTCTGATGGGGACAAATTGCCAGGATGGCCTGCATTTCACCAGTCAAATGTT CATTCAAGTCCACTTCTATATGATATTGACAAGGACGGGACACGGGAAATAGTTTTGGCA ACTTACAATGGTGTAGTGAATTTCTTCAGGGTATCAGGTTATATGATGATGGACAAGCTA GAAGTACCTCGTAGGAAGGTACACAAAGACTGGTATGTTGGGCTGAATACAGATCCCGTT GACCGCTCCCATCCAGATGTTCATGACAGCTCAATTGCAAAGAAAGCTGCTTCTGAAGAA TCTCACCCAAATATTCAGGACAAGCCAGTTGTGAATGAATCTTCTAAGGAATCCCAGTCA CGGAGCACAAATGACTCAACAACACGAGGAGTTGATTCCATGAAACATGCGTCTAAGGAA GAGCCAGTTGAAAGTAAACCTAATTCTACCCGAGGACAGGAGAATATGGATGTGTTAAAC AATCTAAACAGCACAGATGCTGGGAACAACTCTAGTTTAAGTACTACAACAGAGAATGCA TCACATGTTCAGAGAAGGTTGCTTCAAACAGATGAGAAAAGTAATCAAGCAGGAAGCTCA GAAACTGATGCAAGTGATACCGGAACAGCAAAAGCAGCTACTGTTGAAAATAGCGAGCCT CTAGAGGCTGATGCTGATGCATCATTTAATTTGTTTCGGGATGTAGAAGATCTGCCTGAT GAGTACAATTACGATTATGATGACTACGTTGATGAAACCATGTGGGGAGACGAGGACTGG AAAGAACAACAACATGAAAAGGCAGAAGATTATGTGAGCATAGATGCTCACATCTTGTCC ACCCCAGTGATTGCAGATATTGACAGAGATGGCATACAAGAAATGGTGATTTCTGTATCT TACTTCTTTGACCACGAGTATTATGATAAACCAGAACATCTAAAGGAGTTAGGAGGGATT GACATTGGCAAATATATTGCAAGCAGTATAGTTGTTTTTAACCTTGACACAAGACAAGTC AAATGGACTGCAGAACTTGATTTGAGTACAGATAGTGGAAATTTTACTGCCCATGCATAT TCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACT TCCTTTGGCTTGTTTTATGTTATCGATCATCGTGGTAAGGTTAGGAACAAGTTCCCACTT GAGATGGCGGAGATTCATGCACCAGTCATTGCAGCAGATATCAATGATGATGGGAAAATC GAGATGGTCACTGCTGATGTCCATGGCAATGTAGCAGCATGGACTGCAGAGGGAGAAGAA ATCTGGGAGGTTCATCTTAAGAGTCTTATCCCACAGCGCCCTACTGTTGGTGATGTTAAT GGAGATGGTCGCACTGAAGTTGTGGTCCCAACCGTGTCAGGAAACATATATGTTCTTAGT GGAAAGGATGGCTCAAAAATTCAGCCTTTCCCATATAGAACGCATGGAAGGATCATGAGT CCTGTTCTATTGCTTGACATGAGCAAACATGATGAAAAGTCTAAAGGCCTCACCCTTGCT ACTACATCCTTTGATGGTTACTTGTATTTGATTGAGGGCTCAAGTGGCTGTGCAGATGTT GTTGACATTGGAGAGACCTCGTACAGTATGGTTTTGGCTGATAATGTTGATGGTGGAGAT GACCTCGATCTTATTGTTACTACCATGAATGGCAATGTCTTCTGCTTCTCCACTCCCTCT CCGCACCATCCACTTAAGGAATGGAGATCATCAAACCAGGGAAGAAACAATGCTGCATAT CGTTACAACCGTGAAGGTATTTATGTTAAACACGGTTCCAGAACATTCCGTGACGAAGAG GGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAAC CAAGCTCCTTATAACGTGACGGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGG CGCATTGTGGTTAATGCAGCTTATAATGAACCAGGCAAGCAGCGGATGAAGCTTCCCACA GTTCCTGTGAGAACCACAGGAACTGTGCTTGTGGAAATGGTTGACAAAAACGGGTTCTAC TTCTCTGACGAGTTCTCGCTCACCTTCCACATGCATTATTACAAGCTTCTGAAATGGCTC GTGCTTCTTCCAATGCTTGGGATGTTTAGCGTTCTTGTCATCCTGCGGCCACAAGAAGGC GCTCCGTTGCCATCATTTTCAAGGAATATTGATTAG

Peptide Sequence

PEP ID	Os03t0825700-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:34680009:34687904:1 gene:Os03g0825700 transcript:Os03t0825700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEFECTIVE IN EXINE PATTERN FORMATION 1, Defective in Exine Formation 1 description:Ca<sup>2+</sup> binding protein, Regulation of tapetal cell degradation and pollen formation (Os03t0825700-01)
Sequence	MRPLLAFAAVCALLVAAAAPAAAEEEKANKFRQREATDDMLGYPHLDEDALLKTKCPKHV ELRWQTEVSSSIYATPLIADINSDGKLEVVVPSFVHYLEVLEGSDGDKLPGWPAFHQSNV HSSPLLYDIDKDGTREIVLATYNGVVNFFRVSGYMMMDKLEVPRRKVHKDWYVGLNTDPV DRSHPDVHDSSIAKKAASEESHPNIQDKPVVNESSKESQSRSTNDSTTRGVDSMKHASKE EPVESKPNSTRGQENMDVLNNLNSTDAGNNSSLSTTTENASHVQRRLLQTDEKSNQAGSS ETDASDTGTAKAATVENSEPLEADADASFNLFRDVEDLPDEYNYDYDDYVDETMWGDEDW KEQQHEKAEDYVSIDAHILSTPVIADIDRDGIQEMVISVSYFFDHEYYDKPEHLKELGGI DIGKYIASSIVVFNLDTRQVKWTAELDLSTDSGNFTAHAYSSPTVVDLDGDGNLDILVGT SFGLFYVIDHRGKVRNKFPLEMAEIHAPVIAADINDDGKIEMVTADVHGNVAAWTAEGEE IWEVHLKSLIPQRPTVGDVNGDGRTEVVVPTVSGNIYVLSGKDGSKIQPFPYRTHGRIMS PVLLLDMSKHDEKSKGLTLATTSFDGYLYLIEGSSGCADVVDIGETSYSMVLADNVDGGD DLDLIVTTMNGNVFCFSTPSPHHPLKEWRSSNQGRNNAAYRYNREGIYVKHGSRTFRDEE GKHFWVEFEIVDKYRVPYGNQAPYNVTVTLLVPGNYQGERRIVVNAAYNEPGKQRMKLPT VPVRTTGTVLVEMVDKNGFYFSDEFSLTFHMHYYKLLKWLVLLPMLGMFSVLVILRPQEG APLPSFSRNID

Transcript Sequence

Transcript ID	Os03t0825700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:34680009:34687904:1 gene:Os03g0825700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DEFECTIVE IN EXINE PATTERN FORMATION 1, Defective in Exine Formation 1 description:Ca<sup>2+</sup> binding protein, Regulation of tapetal cell degradation and pollen formation (Os03t0825700-01)
Sequence	GTCTCTTTCGCCATTTCGGATTCCCCACCCGACGAGTCTCCGACCACTTCCCACACCGGC GCCTCCACGCCGAGATCTCCTTCCCTCTCCACCGCCGGCGACCGCCGCGGCGCGGCGAGG CCCTCGGGGTCTAGGGTTTTGTACTCAGATGCGTCCCCTCCTCGCCTTCGCGGCGGTATG CGCCCTTCTCGTGGCTGCCGCAGCGCCGGCGGCCGCGGAGGAGGAGAAGGCGAACAAGTT CCGGCAGCGCGAGGCCACCGACGACATGCTTGGATACCCCCACCTTGATGAAGATGCTTT ATTGAAGACCAAGTGTCCAAAACATGTAGAGCTGAGATGGCAGACTGAAGTTAGTTCCAG CATTTATGCAACTCCGTTGATCGCTGATATCAACAGCGATGGAAAGTTGGAAGTAGTGGT GCCATCATTTGTTCATTACCTGGAAGTTCTTGAAGGCTCTGATGGGGACAAATTGCCAGG ATGGCCTGCATTTCACCAGTCAAATGTTCATTCAAGTCCACTTCTATATGATATTGACAA GGACGGGACACGGGAAATAGTTTTGGCAACTTACAATGGTGTAGTGAATTTCTTCAGGGT ATCAGGTTATATGATGATGGACAAGCTAGAAGTACCTCGTAGGAAGGTACACAAAGACTG GTATGTTGGGCTGAATACAGATCCCGTTGACCGCTCCCATCCAGATGTTCATGACAGCTC AATTGCAAAGAAAGCTGCTTCTGAAGAATCTCACCCAAATATTCAGGACAAGCCAGTTGT GAATGAATCTTCTAAGGAATCCCAGTCACGGAGCACAAATGACTCAACAACACGAGGAGT TGATTCCATGAAACATGCGTCTAAGGAAGAGCCAGTTGAAAGTAAACCTAATTCTACCCG AGGACAGGAGAATATGGATGTGTTAAACAATCTAAACAGCACAGATGCTGGGAACAACTC TAGTTTAAGTACTACAACAGAGAATGCATCACATGTTCAGAGAAGGTTGCTTCAAACAGA TGAGAAAAGTAATCAAGCAGGAAGCTCAGAAACTGATGCAAGTGATACCGGAACAGCAAA AGCAGCTACTGTTGAAAATAGCGAGCCTCTAGAGGCTGATGCTGATGCATCATTTAATTT GTTTCGGGATGTAGAAGATCTGCCTGATGAGTACAATTACGATTATGATGACTACGTTGA TGAAACCATGTGGGGAGACGAGGACTGGAAAGAACAACAACATGAAAAGGCAGAAGATTA TGTGAGCATAGATGCTCACATCTTGTCCACCCCAGTGATTGCAGATATTGACAGAGATGG CATACAAGAAATGGTGATTTCTGTATCTTACTTCTTTGACCACGAGTATTATGATAAACC AGAACATCTAAAGGAGTTAGGAGGGATTGACATTGGCAAATATATTGCAAGCAGTATAGT TGTTTTTAACCTTGACACAAGACAAGTCAAATGGACTGCAGAACTTGATTTGAGTACAGA TAGTGGAAATTTTACTGCCCATGCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGA TGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCG TGGTAAGGTTAGGAACAAGTTCCCACTTGAGATGGCGGAGATTCATGCACCAGTCATTGC AGCAGATATCAATGATGATGGGAAAATCGAGATGGTCACTGCTGATGTCCATGGCAATGT AGCAGCATGGACTGCAGAGGGAGAAGAAATCTGGGAGGTTCATCTTAAGAGTCTTATCCC ACAGCGCCCTACTGTTGGTGATGTTAATGGAGATGGTCGCACTGAAGTTGTGGTCCCAAC CGTGTCAGGAAACATATATGTTCTTAGTGGAAAGGATGGCTCAAAAATTCAGCCTTTCCC ATATAGAACGCATGGAAGGATCATGAGTCCTGTTCTATTGCTTGACATGAGCAAACATGA TGAAAAGTCTAAAGGCCTCACCCTTGCTACTACATCCTTTGATGGTTACTTGTATTTGAT TGAGGGCTCAAGTGGCTGTGCAGATGTTGTTGACATTGGAGAGACCTCGTACAGTATGGT TTTGGCTGATAATGTTGATGGTGGAGATGACCTCGATCTTATTGTTACTACCATGAATGG CAATGTCTTCTGCTTCTCCACTCCCTCTCCGCACCATCCACTTAAGGAATGGAGATCATC AAACCAGGGAAGAAACAATGCTGCATATCGTTACAACCGTGAAGGTATTTATGTTAAACA CGGTTCCAGAACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGT GGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGGTTACTCTACT TGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTAATGCAGCTTATAATGAACC AGGCAAGCAGCGGATGAAGCTTCCCACAGTTCCTGTGAGAACCACAGGAACTGTGCTTGT GGAAATGGTTGACAAAAACGGGTTCTACTTCTCTGACGAGTTCTCGCTCACCTTCCACAT GCATTATTACAAGCTTCTGAAATGGCTCGTGCTTCTTCCAATGCTTGGGATGTTTAGCGT TCTTGTCATCCTGCGGCCACAAGAAGGCGCTCCGTTGCCATCATTTTCAAGGAATATTGA TTAGTGATTTGCACAGTGAAACGTCAGGTCCTCATAGAAGCAGATAAGCAGAACAAGATA TTAGCAGGATATCCAATCACCCATGAAGGAGCTTGTCCACATCATACTGCATCGGGGAGC TCAATCTGCACAGAAAAAACCCCTCACGATGCTGCATCCCATCAGTTAGCTAGTTCGGGA AGTACAGCTTTTAGTCATGCAAAAAGAATTTTGTCACACTTGAGATTGTTTTCTAACTTA TGATATTTACACAAGGAACTGGCAGCTGTCTGATCCTGGTTTAACATCTTGAGAATTTTA GCCCCAGATATGCTATCAATCTTTCTTGCACC