Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0812200-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:34031481:34033730:1 gene:Os03g0812200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0812200-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0812200-02)
Sequence

ATGGAACAAGGTCAGGGAGATAGATACTGGTGCCACCACTGCGAGGAAGTGATCGAACCT
GTGGAGCCTGATATGAAGTGTCCTAGCTGTGACAGCGGGTTCGTGGAAGAGATGGGGTCT
GCAGGCTTTGAGCCATCGACCAACTTGAGGTCTGATCGTATCTCCCTCTGGGCACCACTG
CTGCTCGGGATGATGGGAGGCTCATCGCGGCGAGCAAGGCGGCTCCGAAGGCAGATCATG
GAGGATGATGACGACGACGATGACGATGAGGATGATGAAGATGATTCAGACCATGAGCTT
GAAGACTTGTTTAGGAGGCAGAGGAGGGGCTCATCTCTTGTAAGGCTGCTCCAGACCCTC
CGGGATGACTTGAGGGGCTTGGATGACATTGGCAGGGATAGTGACAGAGACAGGGAAAGG
GAGAGAAGGGAGAGGGAGAGGCTGAGGGAGCGGGAGAGGGAGAGGGAGAGGATGAGAGAG
AGGGAGAGAGAACGGAGGAGAGAAAGGACAGAAAGCTTGATACTGATCAACTCCAACAAT
GAGGCCATTATTCTCCAAGGAACATTTGGACCTGATGACAACCAGGATGACTCGAGCAAT
ACAAGTTCTGGTGTTTCACTTGGTGACTACTTTCTTGGTCCTGGATTAGATATCCTCTTG
CAGCATTTGGCGGAAAGTGATCTTAATCGTTCTGGTACACCACCTGCCAAGAAGGAAGCT
GTAGAAGCATTGCCAACTGTGAACATCCAGGAAGTGTTAGGCTGTTCTGTCTGTCTTGAG
GATTTCGAAATGGGGACAGAAGCGAAGGAGATGCCTTGTCAACATAAGTTCCACTCCCAG
TGCATACTTCCATGGCTGGAGCTACACAGTTCTTGCCCAATCTGTAGGTTTCAGTTGCCT
ACCGAGGAGTCGAAAAACCCATGTGAATCAGCCGGTGGAATTGTGTCAGTGAACGATGAT
GGAGATGATGCTGGTACAAGTAGTGACGTAGATAGTGCTAACCAACCTGGTAGTCCTATA
TTCTCTGCTTTGAGTGCACTTTTCTCAAATCCATCATCCTCATCCTCATCCTCATCTGAT
GATAATGCACCACACTCTTCTGAGAGCTGA

Peptide Sequence

PEP ID

Os03t0812200-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:34031481:34033730:1 gene:Os03g0812200 transcript:Os03t0812200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0812200-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0812200-02)
Sequence

MEQGQGDRYWCHHCEEVIEPVEPDMKCPSCDSGFVEEMGSAGFEPSTNLRSDRISLWAPL
LLGMMGGSSRRARRLRRQIMEDDDDDDDDEDDEDDSDHELEDLFRRQRRGSSLVRLLQTL
RDDLRGLDDIGRDSDRDRERERRERERLRERERERERMRERERERRRERTESLILINSNN
EAIILQGTFGPDDNQDDSSNTSSGVSLGDYFLGPGLDILLQHLAESDLNRSGTPPAKKEA
VEALPTVNIQEVLGCSVCLEDFEMGTEAKEMPCQHKFHSQCILPWLELHSSCPICRFQLP
TEESKNPCESAGGIVSVNDDGDDAGTSSDVDSANQPGSPIFSALSALFSNPSSSSSSSSD
DNAPHSSES

Transcript Sequence

Transcript ID

Os03t0812200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:34031481:34033730:1 gene:Os03g0812200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0812200-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0812200-02)
Sequence

AGAGATTATCCTCTTTCCCCTTCCACCGCCACTGCGCCGCAATTCGCCTTCGCTGCGGGC
ATCTGCAGCAGCAGAATCATGGGCTGAAATCGAACCACTGCGCGACAAGGGTGCCAAGGA
TAACTTTATTGTGCTGCTGAAGGAAGACATCTTATTGACCTGCTAGTTCTGTAGATGATT
TTTGGAGTGCTATAAATATCGAGGCGCGAGTTCGGACTGCAAGATACAACACAAGAGTGA
GAAAAGAAAGGCTTTAGCTGAGTTACAGGATGGAACAAGGTCAGGGAGATAGATACTGGT
GCCACCACTGCGAGGAAGTGATCGAACCTGTGGAGCCTGATATGAAGTGTCCTAGCTGTG
ACAGCGGGTTCGTGGAAGAGATGGGGTCTGCAGGCTTTGAGCCATCGACCAACTTGAGGT
CTGATCGTATCTCCCTCTGGGCACCACTGCTGCTCGGGATGATGGGAGGCTCATCGCGGC
GAGCAAGGCGGCTCCGAAGGCAGATCATGGAGGATGATGACGACGACGATGACGATGAGG
ATGATGAAGATGATTCAGACCATGAGCTTGAAGACTTGTTTAGGAGGCAGAGGAGGGGCT
CATCTCTTGTAAGGCTGCTCCAGACCCTCCGGGATGACTTGAGGGGCTTGGATGACATTG
GCAGGGATAGTGACAGAGACAGGGAAAGGGAGAGAAGGGAGAGGGAGAGGCTGAGGGAGC
GGGAGAGGGAGAGGGAGAGGATGAGAGAGAGGGAGAGAGAACGGAGGAGAGAAAGGACAG
AAAGCTTGATACTGATCAACTCCAACAATGAGGCCATTATTCTCCAAGGAACATTTGGAC
CTGATGACAACCAGGATGACTCGAGCAATACAAGTTCTGGTGTTTCACTTGGTGACTACT
TTCTTGGTCCTGGATTAGATATCCTCTTGCAGCATTTGGCGGAAAGTGATCTTAATCGTT
CTGGTACACCACCTGCCAAGAAGGAAGCTGTAGAAGCATTGCCAACTGTGAACATCCAGG
AAGTGTTAGGCTGTTCTGTCTGTCTTGAGGATTTCGAAATGGGGACAGAAGCGAAGGAGA
TGCCTTGTCAACATAAGTTCCACTCCCAGTGCATACTTCCATGGCTGGAGCTACACAGTT
CTTGCCCAATCTGTAGGTTTCAGTTGCCTACCGAGGAGTCGAAAAACCCATGTGAATCAG
CCGGTGGAATTGTGTCAGTGAACGATGATGGAGATGATGCTGGTACAAGTAGTGACGTAG
ATAGTGCTAACCAACCTGGTAGTCCTATATTCTCTGCTTTGAGTGCACTTTTCTCAAATC
CATCATCCTCATCCTCATCCTCATCTGATGATAATGCACCACACTCTTCTGAGAGCTGAA
GCCAGCGCTGGGCCTGGGCTTGCAATATGTCAATGGAGTTCTGAAATGGGACTCCTGAGA
GGCCGGCATCTTTATATCTCGTGGTTTCTGTACATATTTTAAAGTTTAATCCGCTAGACA
AGCTATTCGCGTTTCCTTTATGAAACCTGTGTGGTTTGTAATCAGTTTGGTGCCTGTTAT
GTCTAATTATGTAAAATAAAATTTAGCCTC