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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0810800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:33938998:33941323:1 gene:Os03g0810800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABA DEFICIENT 2 description:Similar to Short-chain alcohol dehydrogenase. (Os03t0810800-01)
Sequence

ATGTCCGCCGCCGCCGCCGCCGCCGCATCCTCCCCCGCTCCCCGGTTGGAAAGCAAGGTT
GCGCTGGTTACCGGTGGTGCTTCAGGTATTGGTGAAGCAATTGTTCGCCTCTTTAGAGAG
CATGGTGCAAAGGTATGTATTGCAGATATCCAAGATGAAGCAGGTCAGAAGCTCCGGGAC
TCCCTTGGAGGTGACCAAGATGTCTTATTTGTCCACTGCGATGTTTCGGTGGAAGAGGAT
GTAGCCCGAGCGGTCGATGCAACAGCTGAAAAGTTTGGTACTCTTGACATCATGGTCAAC
AATGCTGGCTTTACAGGCCAGAAAATCACAGATATCCGAAACATCGACTTTTCTGAAGTC
AGGAAGGTAATCGACATCAATTTAGTTGGTGTATTCCACGGGATGAAACACGCAGCGCGC
ATCATGATCCCCAATAAGAAGGGGTCCATCATCTCATTGGGAAGTGTTTCTAGTGTCATT
GGAGGGTTGGGACCTCATTCATACACAGCAACCAAGCATGCTGTGGTGGGTCTAACCAAG
AATGTAGCTGGGGAATTGGGGAAGCATGGGATACGCGTGAACTGCGTATCTCCCTATGCA
GTGCCCACGGCTCTCTCCATGCCGTATCTGCCCCAGGGCGAGCGCAAGGATGATGCCCTG
AAAGACTTTTTCGCCTTTGTTGGTGGTGAAGCAAACCTGAAAGGTGTGGATCTGCTACCT
AAGGATGTTGCTCAAGCAGTGCTCTACTTGGCAAGCGATGAAGCGAGGTACATCAGCGCG
CTCAACCTCATGGTGGATGGTGGCTTTACCTCTGTGAATCACAATTTGAGAGCATTTGAA
GATTAA

Peptide Sequence

PEP ID

Os03t0810800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:33938998:33941323:1 gene:Os03g0810800 transcript:Os03t0810800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABA DEFICIENT 2 description:Similar to Short-chain alcohol dehydrogenase. (Os03t0810800-01)
Sequence

MSAAAAAAASSPAPRLESKVALVTGGASGIGEAIVRLFREHGAKVCIADIQDEAGQKLRD
SLGGDQDVLFVHCDVSVEEDVARAVDATAEKFGTLDIMVNNAGFTGQKITDIRNIDFSEV
RKVIDINLVGVFHGMKHAARIMIPNKKGSIISLGSVSSVIGGLGPHSYTATKHAVVGLTK
NVAGELGKHGIRVNCVSPYAVPTALSMPYLPQGERKDDALKDFFAFVGGEANLKGVDLLP
KDVAQAVLYLASDEARYISALNLMVDGGFTSVNHNLRAFED

Transcript Sequence

Transcript ID

Os03t0810800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33938998:33941323:1 gene:Os03g0810800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABA DEFICIENT 2 description:Similar to Short-chain alcohol dehydrogenase. (Os03t0810800-01)
Sequence

ACACACACACTAGTGCAAGCAGCTCGAGCTTGAGCTCCACCTCGCCATCGCCGGCGACTT
CTCCTGTCCTGACCGGCCGGAGCTCCGATCTTGGCGGTGACCAAGAGACCTGACGAGACG
ATGTCCGCCGCCGCCGCCGCCGCCGCATCCTCCCCCGCTCCCCGGTTGGAAAGCAAGGTT
GCGCTGGTTACCGGTGGTGCTTCAGGTATTGGTGAAGCAATTGTTCGCCTCTTTAGAGAG
CATGGTGCAAAGGTATGTATTGCAGATATCCAAGATGAAGCAGGTCAGAAGCTCCGGGAC
TCCCTTGGAGGTGACCAAGATGTCTTATTTGTCCACTGCGATGTTTCGGTGGAAGAGGAT
GTAGCCCGAGCGGTCGATGCAACAGCTGAAAAGTTTGGTACTCTTGACATCATGGTCAAC
AATGCTGGCTTTACAGGCCAGAAAATCACAGATATCCGAAACATCGACTTTTCTGAAGTC
AGGAAGGTAATCGACATCAATTTAGTTGGTGTATTCCACGGGATGAAACACGCAGCGCGC
ATCATGATCCCCAATAAGAAGGGGTCCATCATCTCATTGGGAAGTGTTTCTAGTGTCATT
GGAGGGTTGGGACCTCATTCATACACAGCAACCAAGCATGCTGTGGTGGGTCTAACCAAG
AATGTAGCTGGGGAATTGGGGAAGCATGGGATACGCGTGAACTGCGTATCTCCCTATGCA
GTGCCCACGGCTCTCTCCATGCCGTATCTGCCCCAGGGCGAGCGCAAGGATGATGCCCTG
AAAGACTTTTTCGCCTTTGTTGGTGGTGAAGCAAACCTGAAAGGTGTGGATCTGCTACCT
AAGGATGTTGCTCAAGCAGTGCTCTACTTGGCAAGCGATGAAGCGAGGTACATCAGCGCG
CTCAACCTCATGGTGGATGGTGGCTTTACCTCTGTGAATCACAATTTGAGAGCATTTGAA
GATTAACAGAAGTTGTTAGGCACAATTGGTACTCTAGTTTCAGATGCTATGTACCATTCT
GATTTTAGAACTTTGATCAATTACCTAAAGTAAGAATGTCAATAAGGAATGCAATCTTGT
ATCTGTGGTATTGTATAGTACTATGATTGTATTGCCGGTGCTTAAGGACAATCATTGATT
ATTATCAGCACTATTATGTTACAGTTCTG