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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0809900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:33894809:33899621:1 gene:Os03g0809900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsY14b, Y14b, Tsunagi, RBM8 description:Core subunit of exon junction complex (EJC), Embryonic organogenesis and development (Os03t0809900-01)
Sequence

ATGGCGGCGGCGGCGGAGGACGTGGAGTTCGTCGACTACGACCGCGACGAGGAGGAGGAG
GAGGACGCCATGGACGAGGACGATCGGGGCGGTGGCCGCGGCGGGCGCGCGCTACCCGTA
CCCCACATCGTCTCCCAGGGCGTGATGCGCTCGCGCGGCCGCCTCCTCGGCCGCAGCACC
TCCGTGCTCGCCTCCAACCGCGACCGCTTCGACTCCCTCGCCGATGCCGGCAACCCCGGC
CACGGCCCACAGCGCTCTATTGAAGGATGGATACTACTGGTCTCTGGAGTCAAAGAAGAC
GCGGAAGAAGATGATCTGTACAACACTTTCAGTGATTTTGGTCATGTTAAGGACCTACAT
TTAAATCTGGAACGCCGCACTGGATATGCCAAGGGATATGCATTAGTTGAATATGAAAGT
TTTGAGGAAGCACAAACTGCAATCAAAGCAATGAATGGGACTCAGCTGTTAACAAGGACT
GTCTATGTTGACTGGGCATTCAGCAGAGGTCCTATACAGAAACTCACCAGTACAAGGCCA
TTACATCGGCGATCTCGGACTCCACCTCGCAGGCTTGCTGCCTTGACATGTTGA

Peptide Sequence

PEP ID

Os03t0809900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:33894809:33899621:1 gene:Os03g0809900 transcript:Os03t0809900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsY14b, Y14b, Tsunagi, RBM8 description:Core subunit of exon junction complex (EJC), Embryonic organogenesis and development (Os03t0809900-01)
Sequence

MAAAAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVSQGVMRSRGRLLGRST
SVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYNTFSDFGHVKDLH
LNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFSRGPIQKLTSTRP
LHRRSRTPPRRLAALTC

Transcript Sequence

Transcript ID

Os03t0809900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33894809:33899621:1 gene:Os03g0809900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsY14b, Y14b, Tsunagi, RBM8 description:Core subunit of exon junction complex (EJC), Embryonic organogenesis and development (Os03t0809900-01)
Sequence

GGCGCAAACAGTACACGCTCTCCTCCTCCTCCTCGCTGTCTCCCACTCCCATCCCAATGG
CGGCGGCGGCGGAGGACGTGGAGTTCGTCGACTACGACCGCGACGAGGAGGAGGAGGAGG
ACGCCATGGACGAGGACGATCGGGGCGGTGGCCGCGGCGGGCGCGCGCTACCCGTACCCC
ACATCGTCTCCCAGGGCGTGATGCGCTCGCGCGGCCGCCTCCTCGGCCGCAGCACCTCCG
TGCTCGCCTCCAACCGCGACCGCTTCGACTCCCTCGCCGATGCCGGCAACCCCGGCCACG
GCCCACAGCGCTCTATTGAAGGATGGATACTACTGGTCTCTGGAGTCAAAGAAGACGCGG
AAGAAGATGATCTGTACAACACTTTCAGTGATTTTGGTCATGTTAAGGACCTACATTTAA
ATCTGGAACGCCGCACTGGATATGCCAAGGGATATGCATTAGTTGAATATGAAAGTTTTG
AGGAAGCACAAACTGCAATCAAAGCAATGAATGGGACTCAGCTGTTAACAAGGACTGTCT
ATGTTGACTGGGCATTCAGCAGAGGTCCTATACAGAAACTCACCAGTACAAGGCCATTAC
ATCGGCGATCTCGGACTCCACCTCGCAGGCTTGCTGCCTTGACATGTTGACTGGGAGCTA
CTATGTCCGCAATCCTGAATGTTCTCGGTCTGTGTTTTTTGATAGATGGTACGAACGTAG
TCTTAACCGATGTATGGTGTGATATATCTTCCAGATCCAGCCCCCCTGAGTCTTGATTCT
GCTATCCTTATATATCTGCACTAAGTTTGATCAACTTTGTTTGTTGAACTATGTTCTCGG
TTGCTGGCCTGTGGTAGAGGCTGTTGTACTGACTGAGTACGCTAGCTAGAAGGTATATTG
TGTAGTGATGACGTTGAGATGGAAGTGTCTGCCGACTTAAAAGCCTACTACTACATTTTA
AGGAAAACAACTTTCGT