Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0804800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:33592786:33598072:1 gene:Os03g0804800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cct8-prov protein. (Os03t0804800-01)
Sequence

ATGGTGGGGCTGGGCGCGATGCCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCAC
AAGCACCTCTCCGGCCTCGATGAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTC
TCCGCCATCACCCGCACCTCCCTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCAT
CTCGACAAGCTCTTTGTCACGAACGATGCTGCAACAATTGTGAATGAGCTCGAGGTCCAG
CACCCTGCTGCTAAGATCCTGGTACTAGCTGGCAGGGCTCAGCAGGAGGAAATCGGTGAT
GGAGCTAACCTCACCATATCTTTTGCTGGTGAACTGCTTGAGAAGGCCGAGGAGCTTATC
AGGATGGGGTTGCATCCAAGTGAGATCATCATTGGCTACACCAAGGCCATTAATAAGACT
GTTGAGATCTTGGAAGATCTTGTGGAGAAAGGTTCAGAGAACATGGATGTGAGGAACAAG
GAGGAGGTTGTGTTGCTGATGAGATCTGCAGTTGCGAGCAAGCAATTCGGTCAGGAGGAT
ATATTGTGCCCTCTTGTGGCTGATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAAC
TTCAACGTTGACAATGTTAGAGTTGCGAAACTACTTGGAGGTGGTTTGCACAACTCTTCT
GTAGTCCGGGGGATGGTTCTGAAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAG
GCAAAGATTGCAGTATTTGCTGGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGAACT
GTTTTGATACATTCTGCTGAGCAGCTAGAAAACTATGCTAAGACTGAGGAAGCTAAGGTG
GAGGAGCTTATCAAAGCTGTTGCTGACTCGGGTGCAAAGGTTATTGTCAGTGGAGCAGCA
GTTGGCGACATGGCACTGCATTTCTGTGAGCGTTACAAGCTAATGGTTCTTAGAATCAGT
TCAAAATTTGAACTGAGAAGATTTTGCCGTACTACAGGGTCCATTGCACTTTTGAAACTC
AGCCGACCAAATGCGGATGAATTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGT
GGTGCCCGAGTAACTGTTGTCAAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTC
TTAAGAGGCAGCACCGATAGTATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTG
AATACTTACAAGTCAATGTGCAGGGATAGTCGGATTATTCCTGGAGCTGCTGCAACAGAA
ATAGAATTGGCAAGGAGATTGAAGGAATTTTCTCTGAAGGAAACAGGGTTGGACCAGTAT
GCCATTGCAAAATTTGCTGAAAGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCT
GGGCTTAGTGCTATGGAGATAATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACG
AAAGTTGGTATTGACTTGGAAGAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGG
GACCTTTATGTTACAAAGTTATTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTA
CTGCGGGTTGACCAGATCATCATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAG
CCTGGAATGGACGAAGATTAG

Peptide Sequence

PEP ID

Os03t0804800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:33592786:33598072:1 gene:Os03g0804800 transcript:Os03t0804800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cct8-prov protein. (Os03t0804800-01)
Sequence

MVGLGAMPGYGIQSMLKEGHKHLSGLDEAVLKNIDACRELSAITRTSLGPNGMNKMVINH
LDKLFVTNDAATIVNELEVQHPAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELI
RMGLHPSEIIIGYTKAINKTVEILEDLVEKGSENMDVRNKEEVVLLMRSAVASKQFGQED
ILCPLVADACMQVCPKNPANFNVDNVRVAKLLGGGLHNSSVVRGMVLKNDAVGSIKRVEK
AKIAVFAGGVDTSATETKGTVLIHSAEQLENYAKTEEAKVEELIKAVADSGAKVIVSGAA
VGDMALHFCERYKLMVLRISSKFELRRFCRTTGSIALLKLSRPNADELGYADSVSVEEIG
GARVTVVKNEEGGNSVATVVLRGSTDSILDDLERAVDDGVNTYKSMCRDSRIIPGAAATE
IELARRLKEFSLKETGLDQYAIAKFAESFEMVPRTLAENAGLSAMEIISSLYAEHAGGNT
KVGIDLEEGGCKDVSIMKIWDLYVTKLFALKYSADAACTVLRVDQIIMAKPAGGPRRDAQ
PGMDED

Transcript Sequence

Transcript ID

Os03t0804800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33592786:33598072:1 gene:Os03g0804800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Cct8-prov protein. (Os03t0804800-01)
Sequence

GCCCACACTAGGGTTTTTGATCCGCTTCGCCGCCGCCGCCGCCGCCGCCTCCTTCTCCTC
CTCCTCCGCGGCCGTCACCGATCTCATCCGCCGCCGACGATGGTGGGGCTGGGCGCGATG
CCGGGGTACGGGATCCAGTCCATGCTCAAGGAGGGGCACAAGCACCTCTCCGGCCTCGAT
GAGGCCGTCCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACCCGCACCTCC
CTCGGCCCCAACGGAATGAATAAGATGGTCATTAACCATCTCGACAAGCTCTTTGTCACG
AACGATGCTGCAACAATTGTGAATGAGCTCGAGGTCCAGCACCCTGCTGCTAAGATCCTG
GTACTAGCTGGCAGGGCTCAGCAGGAGGAAATCGGTGATGGAGCTAACCTCACCATATCT
TTTGCTGGTGAACTGCTTGAGAAGGCCGAGGAGCTTATCAGGATGGGGTTGCATCCAAGT
GAGATCATCATTGGCTACACCAAGGCCATTAATAAGACTGTTGAGATCTTGGAAGATCTT
GTGGAGAAAGGTTCAGAGAACATGGATGTGAGGAACAAGGAGGAGGTTGTGTTGCTGATG
AGATCTGCAGTTGCGAGCAAGCAATTCGGTCAGGAGGATATATTGTGCCCTCTTGTGGCT
GATGCCTGTATGCAAGTCTGCCCGAAAAATCCTGCTAACTTCAACGTTGACAATGTTAGA
GTTGCGAAACTACTTGGAGGTGGTTTGCACAACTCTTCTGTAGTCCGGGGGATGGTTCTG
AAAAATGACGCTGTTGGGAGCATCAAAAGGGTGGAGAAGGCAAAGATTGCAGTATTTGCT
GGCGGTGTTGATACTTCTGCAACTGAAACCAAGGGAACTGTTTTGATACATTCTGCTGAG
CAGCTAGAAAACTATGCTAAGACTGAGGAAGCTAAGGTGGAGGAGCTTATCAAAGCTGTT
GCTGACTCGGGTGCAAAGGTTATTGTCAGTGGAGCAGCAGTTGGCGACATGGCACTGCAT
TTCTGTGAGCGTTACAAGCTAATGGTTCTTAGAATCAGTTCAAAATTTGAACTGAGAAGA
TTTTGCCGTACTACAGGGTCCATTGCACTTTTGAAACTCAGCCGACCAAATGCGGATGAA
TTAGGATATGCAGACTCTGTTTCGGTGGAAGAGATCGGTGGTGCCCGAGTAACTGTTGTC
AAGAATGAAGAAGGTGGAAACTCAGTGGCTACGGTTGTCTTAAGAGGCAGCACCGATAGT
ATATTGGATGATCTTGAAAGAGCTGTTGATGATGGTGTGAATACTTACAAGTCAATGTGC
AGGGATAGTCGGATTATTCCTGGAGCTGCTGCAACAGAAATAGAATTGGCAAGGAGATTG
AAGGAATTTTCTCTGAAGGAAACAGGGTTGGACCAGTATGCCATTGCAAAATTTGCTGAA
AGTTTTGAAATGGTTCCAAGAACCCTGGCTGAAAATGCTGGGCTTAGTGCTATGGAGATA
ATATCTTCCCTTTATGCTGAACATGCTGGTGGGAATACGAAAGTTGGTATTGACTTGGAA
GAAGGTGGTTGCAAGGATGTCTCAATCATGAAAATATGGGACCTTTATGTTACAAAGTTA
TTCGCTCTAAAATACTCTGCGGATGCTGCATGTACTGTACTGCGGGTTGACCAGATCATC
ATGGCAAAGCCAGCAGGAGGGCCAAGGAGAGATGCTCAGCCTGGAATGGACGAAGATTAG
TTTGCTACCGTGCTATATTTTCCATGTTTACCGTGTTCTGAGGTTTCTCCGAAGTAGACC
TCTTTTTTATCTTATTTATAAGTTTGGTTCAGTAGGAAGATTTTGGTGCCTGGACAGCAC
GTTTGGGTGGGGGCTGCATGGTTGAGCTGATTTTCTGCGGGGTATGTGTTTGTGAGTTTG
TCTCGGTGTATTATTATCATGCCAATGTATCAAAATGGTTAGCTCTAAAAAGGATTTGTT
CTTTCAGATTTGTATGCCGAAGTATCTTTTTTCTTTGTTGCGCTGAACTCTTTTTTGTTC
TACGGTATGATGAATCACTTACGCT