Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0802600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:33487657:33489809:1 gene:Os03g0802600 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, AAA-type, core domain containing protein. (Os03t0802600-01)
Sequence

ATGGATTTGGCGGCGTGGTTTGGGCCGGTGAATTCGGGGCTGGTGCTGCTGATACTGACA
ATGCTGCTGCGAAACCTGCAGAATTTCCAGCTGATGCAGACGTTCGTGGCGCGGCAGCTG
AACCGGCGGGCGCGGCGGCTGGCGGCGCTCATCGACCCCTACCTGTCGATCACCATCCAC
GAGTACGACGCCGGCCGGATGACGCGCAGCGACGTGTTCGCCGAGACCAAGGCGTACCTC
GACGGCGCCGTCGGCACGCGCGACGACGTGCGCCACCTCAACGCCGAGGACGCGCGCGGC
GGCGGCGGCGGCGGCGGCGCAGGCGAAGGGGGTGGTGGTGGCGCTGGCAGCAGTAGCAGC
AAGGGGCTGGTGCTCAGCATGGCGGACGGCGAGGAGGTGGAGGACCACTTCCGCGGCGCG
ACGCTGTGGTGGTCGGCGCACTGCGAGCAGGACGACGACAAGGGGCGGCGCGGCGGCGGC
GGGCGCGCGTCGCAGCGCCGCTCCTACCGCCTCGTCTTCCACGAGTGCCACCGCGACCTC
GTCCGCTCCGCCTACCTCCCCCATGTCCGCGACCAGGGCCGCGCCTTCATGGCCATGAGC
CGCCAGCGCAAGCTCTACACCAACATCCCCAGCTCTCGTTGGGGCGACGACGGGAGTTAC
ATGTGTTCGTTGTGGACGGAGGTGGTGTTCAAGCACCCCAAGACGTTCGAGACGCTGGCG
ATGGATCCGGAGAAGAAGAGGGAGATAATCGACGACCTCGACATGTTCAAGAACGGCAAG
GAGCAGCACCGGCGAGTCGGGAAGGCGTGGAAGCGGGGTTACCTGCTGCACGGGCCGCCG
GGGACGGGGAAGTCGACGATGGTGGCCGCCATGGCCAACTACCTCGGCTACGACGTCTAC
GACATGGAGCTCACGTCGGTGCACACCAACACCGACCTCCGCAAGCTGCTCATCCAGACC
ACCAGCAAGTCCATCATCGTCATCGAGGACGTCGACTGCTCCAGCAACCTCACCGGCCGG
CGCAAGGCCACCGGCGACGGGGAAGACGACGACGACGACGCCAAGACGACCACCAAGAAA
GTGATCGATCGCGGCGGCGGCGGCGGCGGCGTCGGCGGCGACAGCAAGGTGACGCTGTCC
GGGCTGCTAAACTTCATCGACGGGCTGTGGTCGGCGTTCGGGGAGGAGCGGCTGATCGTG
CTGACGACGAACCACGTCGAGGACCTGGACCCGGCGCTGATCAGGACGGGGAGGATGGAC
AAGAAGATCGAGATGTCCTACTGCGACTTCGAGACGTTCAAGTCCATGGCCAAGATCCAC
CTCGACGTCGACGACCACGAGATGTTCGCCGCCGTCGAGAGGCTGCTGCCGGAGGTGGAC
CTGGTGCCGGCCGACGTCGGCGAGCACCTCACGGCCAAGAACCCCCGGGACGACGCCGGC
GCCTGCCTCGCGAGGCTGGTGAACGCGTTGCAGGAGGCCAAGGCCAAGAAGGATGCAGCT
GAACGACAAGATGAAGACAATGGAGTGGTAGTCTGA

Peptide Sequence

PEP ID

Os03t0802600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:33487657:33489809:1 gene:Os03g0802600 transcript:Os03t0802600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, AAA-type, core domain containing protein. (Os03t0802600-01)
Sequence

MDLAAWFGPVNSGLVLLILTMLLRNLQNFQLMQTFVARQLNRRARRLAALIDPYLSITIH
EYDAGRMTRSDVFAETKAYLDGAVGTRDDVRHLNAEDARGGGGGGGAGEGGGGGAGSSSS
KGLVLSMADGEEVEDHFRGATLWWSAHCEQDDDKGRRGGGGRASQRRSYRLVFHECHRDL
VRSAYLPHVRDQGRAFMAMSRQRKLYTNIPSSRWGDDGSYMCSLWTEVVFKHPKTFETLA
MDPEKKREIIDDLDMFKNGKEQHRRVGKAWKRGYLLHGPPGTGKSTMVAAMANYLGYDVY
DMELTSVHTNTDLRKLLIQTTSKSIIVIEDVDCSSNLTGRRKATGDGEDDDDDAKTTTKK
VIDRGGGGGGVGGDSKVTLSGLLNFIDGLWSAFGEERLIVLTTNHVEDLDPALIRTGRMD
KKIEMSYCDFETFKSMAKIHLDVDDHEMFAAVERLLPEVDLVPADVGEHLTAKNPRDDAG
ACLARLVNALQEAKAKKDAAERQDEDNGVVV

Transcript Sequence

Transcript ID

Os03t0802600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33487657:33489809:1 gene:Os03g0802600 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase, AAA-type, core domain containing protein. (Os03t0802600-01)
Sequence

ACATAAAATTCGGTTCATCAAATCAGAAGGAATTTGTTTGTTGAAGCTGTAGAATTGTAG
TGAAGAGATCGATAGATCGATCGGCGATGGATTTGGCGGCGTGGTTTGGGCCGGTGAATT
CGGGGCTGGTGCTGCTGATACTGACAATGCTGCTGCGAAACCTGCAGAATTTCCAGCTGA
TGCAGACGTTCGTGGCGCGGCAGCTGAACCGGCGGGCGCGGCGGCTGGCGGCGCTCATCG
ACCCCTACCTGTCGATCACCATCCACGAGTACGACGCCGGCCGGATGACGCGCAGCGACG
TGTTCGCCGAGACCAAGGCGTACCTCGACGGCGCCGTCGGCACGCGCGACGACGTGCGCC
ACCTCAACGCCGAGGACGCGCGCGGCGGCGGCGGCGGCGGCGGCGCAGGCGAAGGGGGTG
GTGGTGGCGCTGGCAGCAGTAGCAGCAAGGGGCTGGTGCTCAGCATGGCGGACGGCGAGG
AGGTGGAGGACCACTTCCGCGGCGCGACGCTGTGGTGGTCGGCGCACTGCGAGCAGGACG
ACGACAAGGGGCGGCGCGGCGGCGGCGGGCGCGCGTCGCAGCGCCGCTCCTACCGCCTCG
TCTTCCACGAGTGCCACCGCGACCTCGTCCGCTCCGCCTACCTCCCCCATGTCCGCGACC
AGGGCCGCGCCTTCATGGCCATGAGCCGCCAGCGCAAGCTCTACACCAACATCCCCAGCT
CTCGTTGGGGCGACGACGGGAGTTACATGTGTTCGTTGTGGACGGAGGTGGTGTTCAAGC
ACCCCAAGACGTTCGAGACGCTGGCGATGGATCCGGAGAAGAAGAGGGAGATAATCGACG
ACCTCGACATGTTCAAGAACGGCAAGGAGCAGCACCGGCGAGTCGGGAAGGCGTGGAAGC
GGGGTTACCTGCTGCACGGGCCGCCGGGGACGGGGAAGTCGACGATGGTGGCCGCCATGG
CCAACTACCTCGGCTACGACGTCTACGACATGGAGCTCACGTCGGTGCACACCAACACCG
ACCTCCGCAAGCTGCTCATCCAGACCACCAGCAAGTCCATCATCGTCATCGAGGACGTCG
ACTGCTCCAGCAACCTCACCGGCCGGCGCAAGGCCACCGGCGACGGGGAAGACGACGACG
ACGACGCCAAGACGACCACCAAGAAAGTGATCGATCGCGGCGGCGGCGGCGGCGGCGTCG
GCGGCGACAGCAAGGTGACGCTGTCCGGGCTGCTAAACTTCATCGACGGGCTGTGGTCGG
CGTTCGGGGAGGAGCGGCTGATCGTGCTGACGACGAACCACGTCGAGGACCTGGACCCGG
CGCTGATCAGGACGGGGAGGATGGACAAGAAGATCGAGATGTCCTACTGCGACTTCGAGA
CGTTCAAGTCCATGGCCAAGATCCACCTCGACGTCGACGACCACGAGATGTTCGCCGCCG
TCGAGAGGCTGCTGCCGGAGGTGGACCTGGTGCCGGCCGACGTCGGCGAGCACCTCACGG
CCAAGAACCCCCGGGACGACGCCGGCGCCTGCCTCGCGAGGCTGGTGAACGCGTTGCAGG
AGGCCAAGGCCAAGAAGGATGCAGCTGAACGACAAGATGAAGACAATGGAGTGGTAGTCT
GACATAAATAGCCCACCCGTCTTTATACATTTTGTAGAACGCTGTCAATTGCAAACATCA
GGATTCAGGATACCAGCAATGAATTTGGCACACGATTTCATTCTCATTTCTCAACAATCT
CGAGTGCTAGACTAAGTGGATACATTGGACAGAATAATTGTGTTATAGCATGATGCGATA
ATATAAGTTATCTATCAAAATTTCATAGGGCCAAGGGTCTTTTGAGACTCCATGTATTGA
ACATCTCTAGAATCTTGCAAACTGCCTTTTGTCATC