Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0800100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:33363986:33370563:1 gene:Os03g0800100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cactin, domain domain containing protein. (Os03t0800100-01)
Sequence

ATGCCTAGGAAGGAGCGCGACAGCGAGAGCAGCCGCCGCCGGCGGCGGCGGCGGCAGCGC
AGCCGGTCGCCGTCCGACTCGGAGGAAGCCTCCGACTCCAGCGGCTCGCCGCGGCGGAGC
CGGAGCCGGAACCGCCGCAAGAGCCGCCGGAGGGACACCCCTTCGTCCAGCGACGCGAGC
GATTCCCAGGCGTCGGACTCCGGGTCGGACTCCGGCGGCCGGGTCCGGAGGAGGAGCGGA
AGCCGGAAGAAGGGGGAGGTCACCGAAGAGCAGATCGTGGAGTACATGGCTAAGAAGGCG
CAGAAGAAGGCAGAGAAGGTAGCGAAGAAGATGAAGGCGAATGCTGTGTCGGGGTACTCC
AATGACTCGAACCCCTTTGGCGATCCCAACCTGACCGAGAAATTTGTTTGGCGAAAGAAG
ATTGAGCGTGATGTATCTCAAGGGCAAAAGGTGGACATTTCTGTTAAAGGTGAAAAGAAG
AAACAGAGAGAAAGAATGGCTGAAATAGAGAAGGTTAAGAAAAGAAGGGAGGAAAGAGCG
ATCGAAAAGGCACAGCATGAGGAGGAAATGGCATTGTTAGCCAGAGAAAGAGCACGCGCT
GAGTTTCAGGATTGGGAGAAGAAAGAGGAAGAGTTTCATTTTGATCAAAGCAAAGTTAGA
TCTGAGATCAGGTTACGCGAGGGGCGCACAAAACCTATTGATGTTCTCCTGAAGAATCTC
AATTTCTCAGAAGAATTTGATGTTGAGTTAAACGAGCCCTACTTGGTATTCAAGGGATTA
ACGGTGAAGGAAATGGAAGAGCTGCGCGATGACATTAAGATGCATCTTGATCTGGACAGG
GAAAGCCAAATAAATGTCAAATACTGGGAGGCACTCATGGTGGTATGTGACTGGGAGCTA
GGTGAGGCTCGGAAAAGAGATGCCTTGGATCGGGCTAGGGTGCGTGGTGAGGAACCACCT
CCTGATGTTCTTGCGGAAGAGAGGGGCTTACATGCAAGTATTGAGGGTGATGTAAAGGAT
CTTTTGGAGGGTAAGACTTCCACAGAACTAGAAGAGATGCAAAGTCAAATTGAGTCCCAA
ATGCGCTCTGGAACAGCAAAAGTTGTTGAATACTGGATATGA

Peptide Sequence

PEP ID

Os03t0800100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:33363986:33370563:1 gene:Os03g0800100 transcript:Os03t0800100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cactin, domain domain containing protein. (Os03t0800100-01)
Sequence

MPRKERDSESSRRRRRRRQRSRSPSDSEEASDSSGSPRRSRSRNRRKSRRRDTPSSSDAS
DSQASDSGSDSGGRVRRRSGSRKKGEVTEEQIVEYMAKKAQKKAEKVAKKMKANAVSGYS
NDSNPFGDPNLTEKFVWRKKIERDVSQGQKVDISVKGEKKKQRERMAEIEKVKKRREERA
IEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRTKPIDVLLKNL
NFSEEFDVELNEPYLVFKGLTVKEMEELRDDIKMHLDLDRESQINVKYWEALMVVCDWEL
GEARKRDALDRARVRGEEPPPDVLAEERGLHASIEGDVKDLLEGKTSTELEEMQSQIESQ
MRSGTAKVVEYWI

Transcript Sequence

Transcript ID

Os03t0800100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33363986:33370563:1 gene:Os03g0800100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cactin, domain domain containing protein. (Os03t0800100-01)
Sequence

ATCGGCGGCTTCCCTCCCATCGCCGACATGCCTAGGAAGGAGCGCGACAGCGAGAGCAGC
CGCCGCCGGCGGCGGCGGCGGCAGCGCAGCCGGTCGCCGTCCGACTCGGAGGAAGCCTCC
GACTCCAGCGGCTCGCCGCGGCGGAGCCGGAGCCGGAACCGCCGCAAGAGCCGCCGGAGG
GACACCCCTTCGTCCAGCGACGCGAGCGATTCCCAGGCGTCGGACTCCGGGTCGGACTCC
GGCGGCCGGGTCCGGAGGAGGAGCGGAAGCCGGAAGAAGGGGGAGGTCACCGAAGAGCAG
ATCGTGGAGTACATGGCTAAGAAGGCGCAGAAGAAGGCAGAGAAGGTAGCGAAGAAGATG
AAGGCGAATGCTGTGTCGGGGTACTCCAATGACTCGAACCCCTTTGGCGATCCCAACCTG
ACCGAGAAATTTGTTTGGCGAAAGAAGATTGAGCGTGATGTATCTCAAGGGCAAAAGGTG
GACATTTCTGTTAAAGGTGAAAAGAAGAAACAGAGAGAAAGAATGGCTGAAATAGAGAAG
GTTAAGAAAAGAAGGGAGGAAAGAGCGATCGAAAAGGCACAGCATGAGGAGGAAATGGCA
TTGTTAGCCAGAGAAAGAGCACGCGCTGAGTTTCAGGATTGGGAGAAGAAAGAGGAAGAG
TTTCATTTTGATCAAAGCAAAGTTAGATCTGAGATCAGGTTACGCGAGGGGCGCACAAAA
CCTATTGATGTTCTCCTGAAGAATCTCAATTTCTCAGAAGAATTTGATGTTGAGTTAAAC
GAGCCCTACTTGGTATTCAAGGGATTAACGGTGAAGGAAATGGAAGAGCTGCGCGATGAC
ATTAAGATGCATCTTGATCTGGACAGGGAAAGCCAAATAAATGTCAAATACTGGGAGGCA
CTCATGGTGGTATGTGACTGGGAGCTAGGTGAGGCTCGGAAAAGAGATGCCTTGGATCGG
GCTAGGGTGCGTGGTGAGGAACCACCTCCTGATGTTCTTGCGGAAGAGAGGGGCTTACAT
GCAAGTATTGAGGGTGATGTAAAGGATCTTTTGGAGGGTAAGACTTCCACAGAACTAGAA
GAGATGCAAAGTCAAATTGAGTCCCAAATGCGCTCTGGAACAGCAAAAGTTGTTGAATAC
TGGATATGAGTGGAACAAATACAACCAGACTCACTATGACCACGACAACCCCCCACCGAA
AATCGTCCAGGGCTACAAGTTCAATATATTTTACCCTGACCTGGTGGATAAATCAAAGGC
GCCAACATACACGATAGAGAAAGACGGGAGCACCGGTGAGACATGCCTCATAAGATTCCA
TGCGGGCCCTCCATATGAGGATATAGCTTTCCGTATTGTCAACAAGGAGTGGGAATACTC
ACATAAGAAGGGCTTCAAGTGCACATTCGAACGTGGGATTCTCCACCTCTATTTCAACTT
CAAGCGCTACCGCTACAGGCGATAAAATGCCACGCAAGGAAGACGTTTTGATCTCCATTG
TGCTGTTAGAAGTTGGTCTTGCTTTTCTTACCTGAGAGCCCTATGCAAATAGGTTTGCTC
GGATACCAACTCTGGAGTCGACTACACATGCTCATCCGAGATCATATGTACTAAGTGAGA
ACAGGGTAGCATACTAGCATCCCGTACTTATGCTGATTAGGCTCTTTGTTAGCGGTTTGA
AAATAGCAACGAAGTCTCCTGTGTACATTGTAACTTCCTTTTTTCTGCTTTGGAAATTGA
GTTCAGATGTCAAAAATC