Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0800000-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:33360063:33362370:1 gene:Os03g0800000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nitrate and chloride transporter. (Os03t0800000-01);Similar to nitrate and chloride transporter. (Os03t0800000-02)
Sequence

ATGGTGACGGCGGAGTCGGGCGTCGCCGGCGGCGGCCGTGGCGCGGCGGCGCTGCTGCGG
GAGGTGGCGACGGCGCGGTTCGCGCGGCAGGTGGTGCTGGGGCGGTGGTTCATGGTGTTC
GCGTGCCTGCTGATCCTGTCGGCGTCGGGGGCGACGTACATCTTCGGGATCTACTCCAAG
GTGCTCAAGTCGTCGCTGGGCTACGACCAGCGGACGCTGAACACGCTCTCCTTCTTCAAG
GACCTCGGCGCCAACGTCGGCGTCATCTCCGGCCTCATCAACGAGGTGACGCCGCCGTGG
GTGGTGCTCGCCATGGGCGCCGCCATGAACCTCGCGGGCTACCTCATGATCTACCTCGCC
ATCGACGGCCGCACGGCGCGGCCCCCCGTGTGGCTCATGTGCATCTACATCTGCGTCGGC
GCCAACTCGCAGTCGTTCGCCAACACCGGCGCGCTCGTCACCTGCGTCAAGAACTTCCCG
GAGAGCCGGGGCATCGTGCTCGGCTTGCTCAAGGGGTTCGTCGGCCTCAGCGGCGCCATC
TTCACGCAGCTCTACGTCGCCATCTATGGCGACGACGCCAAGTCGCTGGTGCTGCTCATC
GCGTGGCTCCCCGCCGCCATCTCCATCCTGTTCGTCCACACCGTCCGCATCATGCCGTAC
CTCCCCAGCCGCCGCCGCCGCGCCGACGGCGAGCTCGAGGCCTCCGCCGCCACCAGCAAC
GACGCCTTCTTCTGCTTCCTCTACATCTCCATCGCGCTCGCCACCTACCTGCTCACCATG
ATCGTGGTGCAGAACCAGACCAACTTCTCGCACACCGCCTACGTCGTGTCGGCCACCGCG
CTCCTCCTCGTCCTCTTCCTCCCGCTCGTCGTCGTCATCAAGCAGGAGTACCAGATCAAG
AAGGAGCTCGACGACTCCCTCCGTGAGCCCCCCACGGTGACCATCGAAAAGCCAGCCGCC
GCCGCCATGCAAATGTCAGCGATCACCACCAAGCCCAAAACCGAGACACCGTCGTCGTCG
TCTCCGGCGCCGGCGCCGCCGTCTTGCTGCCTCGGTTCTTGCCTGAAGCACATGTTCAAC
CCGCCAGCGCAGGGGGAGGACTACACCATCCTGCAGGCGCTGGTGAGCGTGGACATGCTG
GTGCTGTTCCTCGCCACCATTTGCGGCGTCGGCGGCACGCTGACGGCGATCGACAACATG
GGGCAGATCGGGCAGTCGCTGGGGTACCCGGCGAAGAGCATCAAGACGTTCATCTCGCTC
ATCAGCATCTGGAACTACGCGGGCCGCGTCACCTCGGGCTTCGCGTCGGAGATGTTCCTC
GCCCGCTACAGGTTCCCGCGACCGCTGATGCTCACGGCGGTGCTCCTCCTCGCCTGCGTC
GGCCACCTCCTCATCGCGTTCGGCGTCGCGCAGTCTCTCTACGCCGCCTCCGTCATCATC
GGCTTCTGCTTCGGGGCGCAGTGGCCGCTCCTCTTCGCCATCATCTCCGAGGTGTTCGGC
CTCAAGTACTACTCCACGCTCTACAACTTCGGCTCCGTGGCGAGCCCCGTCGGCGCCTAC
GTCCTCAACGTCCGCGTCGCCGGCTACCTCTACGACGTCGAGGCGGCCAGGCAGCACGGC
GGCTCGCTCGCCGGCGGCGACAAGACCTGCCTCGGCGTGCAGTGCTTCAGGAAGGCCTTC
CTCATCATCACCGCCGCCACCGTCGCCGGCGCGCTCATCTCCCTCGTGCTCGTCTGGAGG
ACAAGGAACTTCTACAAGGGGGACATCTACGCCAAGTTCCGCGAGAACACCGCCACCGAC
GAAGCTACCACCAACGGTAACTCCGCCGATACAGCGGCGGAAAAAAGGTCAACCTTAGTC
AATGACGAGGACAGTAAAAAGGGGTAG

Peptide Sequence

PEP ID

Os03t0800000-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:33360063:33362370:1 gene:Os03g0800000 transcript:Os03t0800000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nitrate and chloride transporter. (Os03t0800000-01);Similar to nitrate and chloride transporter. (Os03t0800000-02)
Sequence

MVTAESGVAGGGRGAAALLREVATARFARQVVLGRWFMVFACLLILSASGATYIFGIYSK
VLKSSLGYDQRTLNTLSFFKDLGANVGVISGLINEVTPPWVVLAMGAAMNLAGYLMIYLA
IDGRTARPPVWLMCIYICVGANSQSFANTGALVTCVKNFPESRGIVLGLLKGFVGLSGAI
FTQLYVAIYGDDAKSLVLLIAWLPAAISILFVHTVRIMPYLPSRRRRADGELEASAATSN
DAFFCFLYISIALATYLLTMIVVQNQTNFSHTAYVVSATALLLVLFLPLVVVIKQEYQIK
KELDDSLREPPTVTIEKPAAAAMQMSAITTKPKTETPSSSSPAPAPPSCCLGSCLKHMFN
PPAQGEDYTILQALVSVDMLVLFLATICGVGGTLTAIDNMGQIGQSLGYPAKSIKTFISL
ISIWNYAGRVTSGFASEMFLARYRFPRPLMLTAVLLLACVGHLLIAFGVAQSLYAASVII
GFCFGAQWPLLFAIISEVFGLKYYSTLYNFGSVASPVGAYVLNVRVAGYLYDVEAARQHG
GSLAGGDKTCLGVQCFRKAFLIITAATVAGALISLVLVWRTRNFYKGDIYAKFRENTATD
EATTNGNSADTAAEKRSTLVNDEDSKKG

Transcript Sequence

Transcript ID

Os03t0800000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33360063:33362370:1 gene:Os03g0800000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Nitrate and chloride transporter. (Os03t0800000-01);Similar to nitrate and chloride transporter. (Os03t0800000-02)
Sequence

ACCGGACAAGCCAAGCGCGCGGCGCGTCCACACACATTTGCATAGCCACAGCCAAGAAGC
GACGCGATGGTGACGGCGGAGTCGGGCGTCGCCGGCGGCGGCCGTGGCGCGGCGGCGCTG
CTGCGGGAGGTGGCGACGGCGCGGTTCGCGCGGCAGGTGGTGCTGGGGCGGTGGTTCATG
GTGTTCGCGTGCCTGCTGATCCTGTCGGCGTCGGGGGCGACGTACATCTTCGGGATCTAC
TCCAAGGTGCTCAAGTCGTCGCTGGGCTACGACCAGCGGACGCTGAACACGCTCTCCTTC
TTCAAGGACCTCGGCGCCAACGTCGGCGTCATCTCCGGCCTCATCAACGAGGTGACGCCG
CCGTGGGTGGTGCTCGCCATGGGCGCCGCCATGAACCTCGCGGGCTACCTCATGATCTAC
CTCGCCATCGACGGCCGCACGGCGCGGCCCCCCGTGTGGCTCATGTGCATCTACATCTGC
GTCGGCGCCAACTCGCAGTCGTTCGCCAACACCGGCGCGCTCGTCACCTGCGTCAAGAAC
TTCCCGGAGAGCCGGGGCATCGTGCTCGGCTTGCTCAAGGGGTTCGTCGGCCTCAGCGGC
GCCATCTTCACGCAGCTCTACGTCGCCATCTATGGCGACGACGCCAAGTCGCTGGTGCTG
CTCATCGCGTGGCTCCCCGCCGCCATCTCCATCCTGTTCGTCCACACCGTCCGCATCATG
CCGTACCTCCCCAGCCGCCGCCGCCGCGCCGACGGCGAGCTCGAGGCCTCCGCCGCCACC
AGCAACGACGCCTTCTTCTGCTTCCTCTACATCTCCATCGCGCTCGCCACCTACCTGCTC
ACCATGATCGTGGTGCAGAACCAGACCAACTTCTCGCACACCGCCTACGTCGTGTCGGCC
ACCGCGCTCCTCCTCGTCCTCTTCCTCCCGCTCGTCGTCGTCATCAAGCAGGAGTACCAG
ATCAAGAAGGAGCTCGACGACTCCCTCCGTGAGCCCCCCACGGTGACCATCGAAAAGCCA
GCCGCCGCCGCCATGCAAATGTCAGCGATCACCACCAAGCCCAAAACCGAGACACCGTCG
TCGTCGTCTCCGGCGCCGGCGCCGCCGTCTTGCTGCCTCGGTTCTTGCCTGAAGCACATG
TTCAACCCGCCAGCGCAGGGGGAGGACTACACCATCCTGCAGGCGCTGGTGAGCGTGGAC
ATGCTGGTGCTGTTCCTCGCCACCATTTGCGGCGTCGGCGGCACGCTGACGGCGATCGAC
AACATGGGGCAGATCGGGCAGTCGCTGGGGTACCCGGCGAAGAGCATCAAGACGTTCATC
TCGCTCATCAGCATCTGGAACTACGCGGGCCGCGTCACCTCGGGCTTCGCGTCGGAGATG
TTCCTCGCCCGCTACAGGTTCCCGCGACCGCTGATGCTCACGGCGGTGCTCCTCCTCGCC
TGCGTCGGCCACCTCCTCATCGCGTTCGGCGTCGCGCAGTCTCTCTACGCCGCCTCCGTC
ATCATCGGCTTCTGCTTCGGGGCGCAGTGGCCGCTCCTCTTCGCCATCATCTCCGAGGTG
TTCGGCCTCAAGTACTACTCCACGCTCTACAACTTCGGCTCCGTGGCGAGCCCCGTCGGC
GCCTACGTCCTCAACGTCCGCGTCGCCGGCTACCTCTACGACGTCGAGGCGGCCAGGCAG
CACGGCGGCTCGCTCGCCGGCGGCGACAAGACCTGCCTCGGCGTGCAGTGCTTCAGGAAG
GCCTTCCTCATCATCACCGCCGCCACCGTCGCCGGCGCGCTCATCTCCCTCGTGCTCGTC
TGGAGGACAAGGAACTTCTACAAGGGGGACATCTACGCCAAGTTCCGCGAGAACACCGCC
ACCGACGAAGCTACCACCAACGGTAACTCCGCCGATACAGCGGCGGAAAAAAGGTCAACC
TTAGTCAATGACGAGGACAGTAAAAAGGGGTAGTAATGTAGTTTACTGATATAAAGATTA
CTACACCAAAAGACAAGAGCTTGTTACTTCTTATTAGCAGAAAAGTCAAAAAATGGTAGG
CTTGCTGCTAATATAAGTTTCCAGATATCTGTAAAAAATTTTGGGGCTAAAAAGAAAGAA
TCTACTACTAGTGGAGTAAACAAGATTAGGCAGCAGCTCTGTGCTTGTACCCATTACAAG
CAACAGTAAGCTGCAAGCTAGAGTAAAATACTGTCACTGTAAGAAGTTGGGTGATTAAGG
CCCTGTTTAGATGGGACTAAAAGTTTTAAGTCCCTATCACATCGGATGTTTGAAAATTAA
TTATAAATATTAAACGTAGACTATTAAT