Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0798200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:33267192:33272140:1 gene:Os03g0798200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0798200-01)
Sequence

ATGCAGGGCGCCACGCCGGGCGATGCCGCTGGAGAGGAGGTGGGAGGCGGCGGGGACGTG
GTGATGGTGAGGCGGGCGAGCGTGGCGGCGTGCCTGACCTGCCCGCTCTGCGGCCGCCTC
CTCCGCGACGCCACCACCATCTCCGAGTGCCTCCACACCTTCTGCAGAAAGTGTATACAT
GAGGAGTTCGTCGATAAGGAGTCCTGCTGCTGCCCTACTTGCAACATTGATCTGGGGTGT
GCTCCGTTGGAGAAACTCAGAGTTGATCACAGTATGCAATTCGTAAGGTCAAGGATATTT
CCTTTCAAACGAAGGAAGGTTGAGAACCCAGAAATCATTTGTCCAGTTGCGTCACCTGTC
AAGAGGAAAGAAAGATCACTATCTTCACTTACAATCCCTGCTCCTCAGGTGTCTATACAG
AAATGTTTGACAAAGAGGAGAACGAAAGCTTCGTGCTTACGCAACTTTCCTTTGCATTCT
ACCTCGAGGGGCAGTAAAGATACATCAAAGAAACTTGGGGGTTGGAGACCATTGGGTTGT
CAACTTAAGCTTGGCAAAGACAAAAAATCTCTCAAATCAAGTGTAAAAGATACAAACAGA
ACCAAAAGTAAGTCTGGTGATACAGATGATGGTGCTCCTGCTAGTAAAGCAAAGGCTAGA
GAACCCTTTACAAGATATGGGCGTGCAGCTAAGAGGACTGGAAGAAAGAAATTGCTCATG
TTGAAGAACAAAAAGAAAAGGTTCAAGGCAAAGCAGCCCAGTAAAAAGAGGAGATTCCGA
GCACTATGGTTTTATCTACTTGCTGCTTTTGACCAGAGAGGAGTACCAACTTTACCACAA
CTACCAGCAAAGTATTTGAGGATCAAGGATGTTGATTTGCCTGCTTCTATTATACAGAAG
TACCTTGCACAGAAACTTAACCTCTCAAGTGAAACTGAGGTAGAAGTGTTGTGTGGTGGC
AAAGTAGTGAACCAAGGGATGACACTGCATGATCTAGCAGATTGCTGGCTTGAGAAAGGA
CCAAAGAGCCGAATGCGCTCATCGGTAGGCTCCCCGGCCACTGGATTCATGGTGACATTG
TTCTATAGAAGGCCAGATGTGGATGTGTCCTCATCCCCAGCTCCACCCCAACCTGACACT
GAAAGTTGCCATAGCTGA

Peptide Sequence

PEP ID

Os03t0798200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:33267192:33272140:1 gene:Os03g0798200 transcript:Os03t0798200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0798200-01)
Sequence

MQGATPGDAAGEEVGGGGDVVMVRRASVAACLTCPLCGRLLRDATTISECLHTFCRKCIH
EEFVDKESCCCPTCNIDLGCAPLEKLRVDHSMQFVRSRIFPFKRRKVENPEIICPVASPV
KRKERSLSSLTIPAPQVSIQKCLTKRRTKASCLRNFPLHSTSRGSKDTSKKLGGWRPLGC
QLKLGKDKKSLKSSVKDTNRTKSKSGDTDDGAPASKAKAREPFTRYGRAAKRTGRKKLLM
LKNKKKRFKAKQPSKKRRFRALWFYLLAAFDQRGVPTLPQLPAKYLRIKDVDLPASIIQK
YLAQKLNLSSETEVEVLCGGKVVNQGMTLHDLADCWLEKGPKSRMRSSVGSPATGFMVTL
FYRRPDVDVSSSPAPPQPDTESCHS

Transcript Sequence

Transcript ID

Os03t0798200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33267192:33272140:1 gene:Os03g0798200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RING finger protein description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0798200-01)
Sequence

GACTGCACACGTCGCCTCGCCTCGTCTGCGTCTGCGTCTGCGTCTGCGTCTCCGTCTCCA
ACCCAGGCGGCGTAGGGGAAGGAGAAGGAAGGAGAGATCGCGCGGCGCGCTGGCTGTCGC
TGTCGCCGTCGCGCAGGCTCGTCCACCTCGCGAAATCGTGAGCTCGCGCGCCGCTCCGGG
CATGCAGGGCGCCACGCCGGGCGATGCCGCTGGAGAGGAGGTGGGAGGCGGCGGGGACGT
GGTGATGGTGAGGCGGGCGAGCGTGGCGGCGTGCCTGACCTGCCCGCTCTGCGGCCGCCT
CCTCCGCGACGCCACCACCATCTCCGAGTGCCTCCACACCTTCTGCAGAAAGTGTATACA
TGAGGAGTTCGTCGATAAGGAGTCCTGCTGCTGCCCTACTTGCAACATTGATCTGGGGTG
TGCTCCGTTGGAGAAACTCAGAGTTGATCACAGTATGCAATTCGTAAGGTCAAGGATATT
TCCTTTCAAACGAAGGAAGGTTGAGAACCCAGAAATCATTTGTCCAGTTGCGTCACCTGT
CAAGAGGAAAGAAAGATCACTATCTTCACTTACAATCCCTGCTCCTCAGGTGTCTATACA
GAAATGTTTGACAAAGAGGAGAACGAAAGCTTCGTGCTTACGCAACTTTCCTTTGCATTC
TACCTCGAGGGGCAGTAAAGATACATCAAAGAAACTTGGGGGTTGGAGACCATTGGGTTG
TCAACTTAAGCTTGGCAAAGACAAAAAATCTCTCAAATCAAGTGTAAAAGATACAAACAG
AACCAAAAGTAAGTCTGGTGATACAGATGATGGTGCTCCTGCTAGTAAAGCAAAGGCTAG
AGAACCCTTTACAAGATATGGGCGTGCAGCTAAGAGGACTGGAAGAAAGAAATTGCTCAT
GTTGAAGAACAAAAAGAAAAGGTTCAAGGCAAAGCAGCCCAGTAAAAAGAGGAGATTCCG
AGCACTATGGTTTTATCTACTTGCTGCTTTTGACCAGAGAGGAGTACCAACTTTACCACA
ACTACCAGCAAAGTATTTGAGGATCAAGGATGTTGATTTGCCTGCTTCTATTATACAGAA
GTACCTTGCACAGAAACTTAACCTCTCAAGTGAAACTGAGGTAGAAGTGTTGTGTGGTGG
CAAAGTAGTGAACCAAGGGATGACACTGCATGATCTAGCAGATTGCTGGCTTGAGAAAGG
ACCAAAGAGCCGAATGCGCTCATCGGTAGGCTCCCCGGCCACTGGATTCATGGTGACATT
GTTCTATAGAAGGCCAGATGTGGATGTGTCCTCATCCCCAGCTCCACCCCAACCTGACAC
TGAAAGTTGCCATAGCTGATGCAGAGCTTTGCTTCGTTTCTGAACCATCTGTGATTGGCT
TCACTCATTGGGCTGTCAGCCCTTGATTGATCTGCGAATCGGTTCCAATTTGTGTGAGGC
TCAAGCCACACCAATTCACTAATATGTAGATAAATGCTACTAATTTTACAAGCCATGTTG
GGCTTCTGATCATCTACCTTCTTCAACCATTATTTTCCTTTTTTTTCTCTTCAACCATTG
TACCTAGGTATGTGATCTGTAATGAGATGTTAATCGTTAAGTATCAGTTGTTAGAGCT