Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0797700-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:33240388:33244357:1 gene:Os03g0797700 gene_biotype:protein_coding transcript_biotype:protein_coding description:rRNA-processing protein EFG1 domain containing protein. (Os03t0797700-01);rRNA-processing protein EFG1 domain containing protein. (Os03t0797700-02)
Sequence

ATGGCGCACGGCCGCGCCGCCGCCGTACGCCGCCCCAAGTCGTCGTCGGCGTCGTCCGCG
GGGGCGGCTGCCGAACGGAAGCGGAAGCGCGCCGCCGCCGCCAAGACCGTTTCCCTCAAG
AACCAGATCCGCTCCACCGAGCGCCTGCTCCGCAAGGACCTTCCTAATGACATTAGGGTA
GCTCAAGAGAAGAAACTGGAAGAATTGAAGCGGCAACAAGAGCTTCAGAATCAACTGGCT
ATTCAACGAACAGTTCAGCTGAGAGATAGAAAGATAAAATTCTTTGAGAGGCGAAAGATT
GAGAGGATGATCAGGCGCCTTGAGAAGCAGCAACGTTCAAATGCCGATGATGCCAGCAAT
AAACTGTCAAAATTAAAGGAAGATCTTGAGTATGTTAGGTTTTTCCCAAAGAATGAGAAA
TATGTCTCACTGTTTTCTGGAGGGAATACCCCAGATATGTTAGAGAAGAGGAATAAGTGG
CGTAAACAGATAAAAGAAAATTTGATGGCTGCTGCAGAAAATGGAAAAGACTTGGAAGAG
ACAGCAAGCGATGATGATACTGTGGATGTGAGTGATGACGACTTCTTCATGTCGGGGAGT
TCAAGTGATGAAGAGGCTGATGATGAATGGACTGACAAAAGTGCCAAAGAACCAGCTTCC
AGTGCTTCAGGTAAGGCAGCGTCTGGCATGTCAAGCGATGAAAAGAATCAGCGTCAGAGA
GATGCTCGAGTTCTTATGCCACCACCTCGTTCATTAGCACCAAATAGAACTAGACCAGGG
GTGAAACACGTGTTATCCAGCTCAAGCAATACTTCAAATAGCACAAGTGGTGGCACTTTC
AAAAATAGGAGAGCAGCAAATCAGCCTGGAGATCATAACAGCAACCTGAGTTCAAATTCT
GATGCTCATAAACCACGTCGCAAAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGA

Peptide Sequence

PEP ID

Os03t0797700-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:33240388:33244357:1 gene:Os03g0797700 transcript:Os03t0797700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:rRNA-processing protein EFG1 domain containing protein. (Os03t0797700-01);rRNA-processing protein EFG1 domain containing protein. (Os03t0797700-02)
Sequence

MAHGRAAAVRRPKSSSASSAGAAAERKRKRAAAAKTVSLKNQIRSTERLLRKDLPNDIRV
AQEKKLEELKRQQELQNQLAIQRTVQLRDRKIKFFERRKIERMIRRLEKQQRSNADDASN
KLSKLKEDLEYVRFFPKNEKYVSLFSGGNTPDMLEKRNKWRKQIKENLMAAAENGKDLEE
TASDDDTVDVSDDDFFMSGSSSDEEADDEWTDKSAKEPASSASGKAASGMSSDEKNQRQR
DARVLMPPPRSLAPNRTRPGVKHVLSSSSNTSNSTSGGTFKNRRAANQPGDHNSNLSSNS
DAHKPRRKRRHRKKKKLA

Transcript Sequence

Transcript ID

Os03t0797700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33240388:33244357:1 gene:Os03g0797700 gene_biotype:protein_coding transcript_biotype:protein_coding description:rRNA-processing protein EFG1 domain containing protein. (Os03t0797700-01);rRNA-processing protein EFG1 domain containing protein. (Os03t0797700-02)
Sequence

GTCTCCTCTCGTCTCGTCTCCCCGCTAGGGTTCAGGCCATGGCGCACGGCCGCGCCGCCG
CCGTACGCCGCCCCAAGTCGTCGTCGGCGTCGTCCGCGGGGGCGGCTGCCGAACGGAAGC
GGAAGCGCGCCGCCGCCGCCAAGACCGTTTCCCTCAAGAACCAGATCCGCTCCACCGAGC
GCCTGCTCCGCAAGGACCTTCCTAATGACATTAGGGTAGCTCAAGAGAAGAAACTGGAAG
AATTGAAGCGGCAACAAGAGCTTCAGAATCAACTGGCTATTCAACGAACAGTTCAGCTGA
GAGATAGAAAGATAAAATTCTTTGAGAGGCGAAAGATTGAGAGGATGATCAGGCGCCTTG
AGAAGCAGCAACGTTCAAATGCCGATGATGCCAGCAATAAACTGTCAAAATTAAAGGAAG
ATCTTGAGTATGTTAGGTTTTTCCCAAAGAATGAGAAATATGTCTCACTGTTTTCTGGAG
GGAATACCCCAGATATGTTAGAGAAGAGGAATAAGTGGCGTAAACAGATAAAAGAAAATT
TGATGGCTGCTGCAGAAAATGGAAAAGACTTGGAAGAGACAGCAAGCGATGATGATACTG
TGGATGTGAGTGATGACGACTTCTTCATGTCGGGGAGTTCAAGTGATGAAGAGGCTGATG
ATGAATGGACTGACAAAAGTGCCAAAGAACCAGCTTCCAGTGCTTCAGGTAAGGCAGCGT
CTGGCATGTCAAGCGATGAAAAGAATCAGCGTCAGAGAGATGCTCGAGTTCTTATGCCAC
CACCTCGTTCATTAGCACCAAATAGAACTAGACCAGGGGTGAAACACGTGTTATCCAGCT
CAAGCAATACTTCAAATAGCACAAGTGGTGGCACTTTCAAAAATAGGAGAGCAGCAAATC
AGCCTGGAGATCATAACAGCAACCTGAGTTCAAATTCTGATGCTCATAAACCACGTCGCA
AAAGGAGACATCGGAAGAAAAAGAAGCTGGCATGAATATTCTGGAGCGTGAGGTGGAAGC
TGATTTTATTCCCGCACCAAAGTGTGTACTAAGGCTGGTTACTATCAAAAGAATGGAGAC
AACATGTGTGCCCTGAGGAAGTTGCTGATTTTGTGCGCCCTCTCTCGATGTAAAATGAAT
CTCCTATCGCTCTTCACTCAATCACTCATTTGTTTTACAGTAACCATCCAAAAAGTTCCG
ATTATTAACT