Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0796501-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:33143530:33146079:-1 gene:Os03g0796501 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L4 (L1). (Os03t0796501-00)
Sequence

ATGGCCGCCGCCGCGCGCCCCCTGGTGTCCGTGAAGGCCCTGGAGGGCGACATGGCGACG
GACTCGGCCGGCATCCAGATGCCGCAGGTGCTCCGCGCGCCGATCCGCCCCGACGTGGTC
ACCTTCACCCACAAGCTCCTCTCCTGCAACCGCCGCCAGCCGTACGCCGTGTCGCGCCGC
GCGGGGCACCAGACCTCCGCGGAGTCGTGGGGCACGGGCCGCGCCGTGTCCCGCATCCCG
CGCGTCCCCGGCGGCGGCACGCACCGCGCGGGGCAGGGCGCGTTCGGCAACATGTGCCGC
GGCGGGCGCATGTTCGCGCCCACCAAGATCTGGCGCCGCTGGCACCGCCGCGTCAACATC
CGCCTCCGCCGCATAGCCGTCGCGTCCGCGCTCGCCGCCACCGCCGTCCCGTCCCTCGTC
CTCGCCCGCGGCCACCGCATCGAGGGCGTCCCCGAGTTCCCGCTCGTCGTCTCGGACTCC
ATCGAGTCCATCGAGAAGACTGCGCAGTCCATCAAGGTCCTCAAGCAGATTGGTGCCTAC
GCTGATGCCGAGAAGACCAAGGATTCGGTGGCCATCCGCGCTGGCAAGGGGAAGATGCGC
AACCGCCGGTACATCAATCGCAAGGGCCCCCTCATCGTCTACGGCACCGAGGGTTCCAAG
GTCGTCAAGGCTTTCCGCAACCTCCCCGGCGTTGATGTTGCCAATGTGGAGCGCCTCAAC
CTGCTCGACCTTGCCCCTGGTGGCCACCTTGGCCGCTTCGTGATCTGGACCGAGTGCGCG
TTCAAGAAGCTCGACGAGGTGTATGGTGGCTTCGACACACCGGCGCTGAAGAAGAAGGGC
TTCGTGCTCCCGAGGCCGAAGATGGCGAATGCCGACCTGTCCAGGCTGATCAACTCCGAT
GAGGTCCAGTCGGTGGTGAAGCCCATCAACAAGGAGGTGAAGCTCAGGGAGGCGAGAAGG
AACCCTCTGAAGAATGTGGCCGCTGTGCTCAAGCTGAACCCCTACTTCGGCACTGCGCGC
AAGATGGCAGCTCTCGCTGAGGCTGCGCGTGTCAAGGCCAGGACTGAGAAGCTCGACTCC
AAGAGGACCAAGCTCAGCCCGGAGGAGTCTTCTAAGATCAAGGCTGCTGGAAAGGCATGG
TACAAAACCATGATTTCTGACAGTGACTACACAGAGTTTGAGAATTTCTCGAAGTGGCTT
GGTGTGACGCAGTGA

Peptide Sequence

PEP ID

Os03t0796501-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:33143530:33146079:-1 gene:Os03g0796501 transcript:Os03t0796501-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L4 (L1). (Os03t0796501-00)
Sequence

MAAAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRR
AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNI
RLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAY
ADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLN
LLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSD
EVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKLDS
KRTKLSPEESSKIKAAGKAWYKTMISDSDYTEFENFSKWLGVTQ

Transcript Sequence

Transcript ID

Os03t0796501-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33143530:33146079:-1 gene:Os03g0796501 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 60S ribosomal protein L4 (L1). (Os03t0796501-00)
Sequence

AGCTCGTCTCCTTCTCTCGCCGCCCTCTCCTTCCCTCGCCGCCGCCCGAGCCACTACACT
ATCCACCTCGCCGCCGCCGCCGCCGCCGGAAATGGCCGCCGCCGCGCGCCCCCTGGTGTC
CGTGAAGGCCCTGGAGGGCGACATGGCGACGGACTCGGCCGGCATCCAGATGCCGCAGGT
GCTCCGCGCGCCGATCCGCCCCGACGTGGTCACCTTCACCCACAAGCTCCTCTCCTGCAA
CCGCCGCCAGCCGTACGCCGTGTCGCGCCGCGCGGGGCACCAGACCTCCGCGGAGTCGTG
GGGCACGGGCCGCGCCGTGTCCCGCATCCCGCGCGTCCCCGGCGGCGGCACGCACCGCGC
GGGGCAGGGCGCGTTCGGCAACATGTGCCGCGGCGGGCGCATGTTCGCGCCCACCAAGAT
CTGGCGCCGCTGGCACCGCCGCGTCAACATCCGCCTCCGCCGCATAGCCGTCGCGTCCGC
GCTCGCCGCCACCGCCGTCCCGTCCCTCGTCCTCGCCCGCGGCCACCGCATCGAGGGCGT
CCCCGAGTTCCCGCTCGTCGTCTCGGACTCCATCGAGTCCATCGAGAAGACTGCGCAGTC
CATCAAGGTCCTCAAGCAGATTGGTGCCTACGCTGATGCCGAGAAGACCAAGGATTCGGT
GGCCATCCGCGCTGGCAAGGGGAAGATGCGCAACCGCCGGTACATCAATCGCAAGGGCCC
CCTCATCGTCTACGGCACCGAGGGTTCCAAGGTCGTCAAGGCTTTCCGCAACCTCCCCGG
CGTTGATGTTGCCAATGTGGAGCGCCTCAACCTGCTCGACCTTGCCCCTGGTGGCCACCT
TGGCCGCTTCGTGATCTGGACCGAGTGCGCGTTCAAGAAGCTCGACGAGGTGTATGGTGG
CTTCGACACACCGGCGCTGAAGAAGAAGGGCTTCGTGCTCCCGAGGCCGAAGATGGCGAA
TGCCGACCTGTCCAGGCTGATCAACTCCGATGAGGTCCAGTCGGTGGTGAAGCCCATCAA
CAAGGAGGTGAAGCTCAGGGAGGCGAGAAGGAACCCTCTGAAGAATGTGGCCGCTGTGCT
CAAGCTGAACCCCTACTTCGGCACTGCGCGCAAGATGGCAGCTCTCGCTGAGGCTGCGCG
TGTCAAGGCCAGGACTGAGAAGCTCGACTCCAAGAGGACCAAGCTCAGCCCGGAGGAGTC
TTCTAAGATCAAGGCTGCTGGAAAGGCATGGTACAAAACCATGATTTCTGACAGTGACTA
CACAGAGTTTGAGAATTTCTCGAAGTGGCTTGGTGTGACGCAGTGAATTTATGATTGATG
AAGTTTTAGTAGATTACATTAAGTTCTGGAATTATGATTTTGGTTATTATTGTCATATGA
CACTTGTTATGTGGAGTTCAGAGATGATATGTCGTTTTGGTAGCTCTCTTTGCCCCGAGA
CTTATACACCTGGATACCTTTCATGAGACATAATATATGGCATATTTTGGCGGTCAAGTT
GTGCCTTCTGCTGTGGTTTGTTTTGGTTCCCTTGTGTTATCAATTGTTGCTTCTAGTTTG
TTAGGCGCTGTTTGGGTTTTTTTGTTGCCGAATTAAT