Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0795200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:33078797:33080790:1 gene:Os03g0795200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0795200-01)
Sequence

ATGTCGTCCTCGCCTCTAACCGCCACGCCTTCCCCTCTCCTTCCCGCCAAATCCAAGAAC
CCACCACCCCACCACCACCACCACAACCCGCTCCTCGCCTACCTCCCGCACTGCACGAGC
CTCCGCGCGCTCGCGCAGCTCCACGCCGTCGCCGTCAAGGCCGGCGGCGGCCTCCAGGCG
CACCCGGCCTTCGTCACGAGGCTCCTCACGCTCTGCACGGAGCAGGGGGCGGAGGCGCCC
GCGCACCTCGCGTACGCGCGCCAGGTGTTCGACAGAATCCCCCACCCGGGCGACGTCGTC
TGGTACAACACGCTGCTGCGCGGGTACGCGCGCGGGGGTGGGGGCGGGGGCGGCGCGGAG
GAGGCCGCGCGGGTGTTCGTCCGGATGATGGAGGAGGGGGTGGCGCCCGACACGTACACG
TTCGTGTCGCTGCTCAAGGCGTGCGCGTCCGCGCGGGCCGGCGAGGAAGGGCGGCAGGCG
CACGGCGTGGCGGTCAAGGCCGGCGCCGCGGAGCACGAGTACGTCGCGCCCACGCTGATC
AACATGTACGCCGAGTGCGGGGACGTGCGCGCCGCGCGCGTGATGTTCGACAGGATGGAC
GGGGAGTGCGTCGTCTCGTACAATGCCATGATCACCGCGTCCGTCAGGAGCAGCCTGCCC
GGCGAGGCGCTGGTGCTGTTCCGGGAGATGCAGGCCAAGGGGCTCAAGCCGACGTCCGTG
ACGTTGATTAGTGTGCTCTCGGCGTGCGCATTGCTCGGAGCTCTGGAACTTGGGAGGTGG
ATCCACGACTATATCAGGAAGATGAGGCTTGATTCACTTGTGAAGGTCAACACTGCGCTG
ATCGACATGTATGCGAAGTGTGGGAGCTTGGAGGATGCCATTGGCGTGTTCCAGGATATG
GAATCAAGGGATAAACAAGCTTGGTCTGTGATGATGGTGGCATATGCTAACCATGGCTAT
GGCAGAGAGGCCATTTCAATGTTCGAAGAGATGAAGAAACAAGGTATGAAACCTGATGAT
GTTACATTCCTTGGGGTGCTCTATGCCTGCAGCCACTCTGGTATGGTGAGCGAAGGGCTC
CAATACTTTGACAGCATGAGGGAATATGGCATTGTTTCAGGGATCAAGCACTATGGTTGT
GTGACTGATTTGCTGGCTCGATCAGGTCAGCTAGAAAGGGCTTACAAGTTCATTGATGAA
CTGCCAATAAAACCAACTGCCATCTTATGGAGGACGCTGCTTTCTGCTTGTGCGGGTCAT
GGAGATGTCGATATGGGAAAACGTGTCTTTGAGAGGATTCTGGAGCTGGATGATTCTCAT
GGTGGTGACTATGTAATATTCTCAAATTTGTGTGCCAATACTGGGAGATGGGAAGAGATG
AACATGGTAAGGAAGCTTATGAGTGAAAAGGGGGTGGTGAAGGTGCCAGGGTGTAGCTCA
ATTGAGATAGATAACATGGTTCATGAGTTCTTCGCAGGAGATGGAAGTCACCCACACTCA
CAGGAGGCACGCAGAATGGTTGATGAAGTTATTGAGCAGCTAAAACTTGTCGGTTATGTC
CCTAATACTTCACATGTGTTTCATGTTGAAATGGGTGAGGAGGAGAAAGCAACAAGCCTA
AGATACCATAGTGAGAAGCTGGCAATCTCTTTTGGGCTTCTAAATACAGCACCGGGAACT
ACCCTTCGTATTGTTAAGAATCTTCGTGTGTGTCCAGATTGCCATTCGATGGCAAAGCTT
GTTTCTATGGTCTTTAACAGGCGAATCATACTCAGAGACCTAAATCGTTTCCACCACTTT
GAAGATGGGGTCTGCTCTTGTGGTGACTACTGGTAG

Peptide Sequence

PEP ID

Os03t0795200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:33078797:33080790:1 gene:Os03g0795200 transcript:Os03t0795200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0795200-01)
Sequence

MSSSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQA
HPAFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAE
EAARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLI
NMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSV
TLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM
ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL
QYFDSMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGH
GDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSS
IEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSL
RYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHF
EDGVCSCGDYW

Transcript Sequence

Transcript ID

Os03t0795200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33078797:33080790:1 gene:Os03g0795200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0795200-01)
Sequence

ACTGGCCTCTCGTCCTCACTCCATAACGGCCATGTCGTCCTCGCCTCTAACCGCCACGCC
TTCCCCTCTCCTTCCCGCCAAATCCAAGAACCCACCACCCCACCACCACCACCACAACCC
GCTCCTCGCCTACCTCCCGCACTGCACGAGCCTCCGCGCGCTCGCGCAGCTCCACGCCGT
CGCCGTCAAGGCCGGCGGCGGCCTCCAGGCGCACCCGGCCTTCGTCACGAGGCTCCTCAC
GCTCTGCACGGAGCAGGGGGCGGAGGCGCCCGCGCACCTCGCGTACGCGCGCCAGGTGTT
CGACAGAATCCCCCACCCGGGCGACGTCGTCTGGTACAACACGCTGCTGCGCGGGTACGC
GCGCGGGGGTGGGGGCGGGGGCGGCGCGGAGGAGGCCGCGCGGGTGTTCGTCCGGATGAT
GGAGGAGGGGGTGGCGCCCGACACGTACACGTTCGTGTCGCTGCTCAAGGCGTGCGCGTC
CGCGCGGGCCGGCGAGGAAGGGCGGCAGGCGCACGGCGTGGCGGTCAAGGCCGGCGCCGC
GGAGCACGAGTACGTCGCGCCCACGCTGATCAACATGTACGCCGAGTGCGGGGACGTGCG
CGCCGCGCGCGTGATGTTCGACAGGATGGACGGGGAGTGCGTCGTCTCGTACAATGCCAT
GATCACCGCGTCCGTCAGGAGCAGCCTGCCCGGCGAGGCGCTGGTGCTGTTCCGGGAGAT
GCAGGCCAAGGGGCTCAAGCCGACGTCCGTGACGTTGATTAGTGTGCTCTCGGCGTGCGC
ATTGCTCGGAGCTCTGGAACTTGGGAGGTGGATCCACGACTATATCAGGAAGATGAGGCT
TGATTCACTTGTGAAGGTCAACACTGCGCTGATCGACATGTATGCGAAGTGTGGGAGCTT
GGAGGATGCCATTGGCGTGTTCCAGGATATGGAATCAAGGGATAAACAAGCTTGGTCTGT
GATGATGGTGGCATATGCTAACCATGGCTATGGCAGAGAGGCCATTTCAATGTTCGAAGA
GATGAAGAAACAAGGTATGAAACCTGATGATGTTACATTCCTTGGGGTGCTCTATGCCTG
CAGCCACTCTGGTATGGTGAGCGAAGGGCTCCAATACTTTGACAGCATGAGGGAATATGG
CATTGTTTCAGGGATCAAGCACTATGGTTGTGTGACTGATTTGCTGGCTCGATCAGGTCA
GCTAGAAAGGGCTTACAAGTTCATTGATGAACTGCCAATAAAACCAACTGCCATCTTATG
GAGGACGCTGCTTTCTGCTTGTGCGGGTCATGGAGATGTCGATATGGGAAAACGTGTCTT
TGAGAGGATTCTGGAGCTGGATGATTCTCATGGTGGTGACTATGTAATATTCTCAAATTT
GTGTGCCAATACTGGGAGATGGGAAGAGATGAACATGGTAAGGAAGCTTATGAGTGAAAA
GGGGGTGGTGAAGGTGCCAGGGTGTAGCTCAATTGAGATAGATAACATGGTTCATGAGTT
CTTCGCAGGAGATGGAAGTCACCCACACTCACAGGAGGCACGCAGAATGGTTGATGAAGT
TATTGAGCAGCTAAAACTTGTCGGTTATGTCCCTAATACTTCACATGTGTTTCATGTTGA
AATGGGTGAGGAGGAGAAAGCAACAAGCCTAAGATACCATAGTGAGAAGCTGGCAATCTC
TTTTGGGCTTCTAAATACAGCACCGGGAACTACCCTTCGTATTGTTAAGAATCTTCGTGT
GTGTCCAGATTGCCATTCGATGGCAAAGCTTGTTTCTATGGTCTTTAACAGGCGAATCAT
ACTCAGAGACCTAAATCGTTTCCACCACTTTGAAGATGGGGTCTGCTCTTGTGGTGACTA
CTGGTAGAGTTTAGGAACATAACTGCTGTACCAAAATACCTTATCCTTCCAGTAACACAA
AGGCTTTATCCATTCAGGTATGATTAACTTGTACACCCATGAGAAACTTACTGATGATTG
AAGATTCATTTTCT