Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0793600-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:33010944:33014444:1 gene:Os03g0793600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2. (Os03t0793600-00)
Sequence

ATGAGGGAAGAGAGCAACAAGAAGAGCAAGCTCTCATGGTCCAAATCCCTTGTGAGGAAG
TGGTTCAACATCAAGAGCAAGGCAAACGATTTCCATGCGGACTATGATGCTAGCCAAGGA
AGAAATGGTCATGGAGGTGAATGGAGGACCAGCTGCTCAGAGAGGGAGGCAGGCACAGCC
AAGAAAAGCAGAACTGACCGGATGCCAAAGAAGAATGCCGACTGCATTCGTCGAGGAAGG
ACTGAATCTGATGTGTCACGCCTGACTGAAGTTCAAGATTACAGAATATTTGCTTCAACA
TGGAATGTGGGTGGTAAATCCCCATCAAAGGGATTAGATTTAGATGAGTGGCTCCACTCT
TCACCTCCTGCTGATATCTATATTCTAGGATTTCAAGAAATTGTTCCTTTGAATGCTGGA
AATGTTCTTGGTACTGAAGATAATGTTCCAGCAAAAAAGTGGGTATCCCTCATTAGGAGG
ACACTGAACAGGAATCCTGGGGCTAGCAGCTATGGTGGCTATCACACACCATCTCCTGTC
CCTGATCCAGTTGTTGAACTAGATGCTGATTTTGAGGGATCATCGAGAAGACATGATAAC
TTGTCATTTTTCCATCGGCGATCATTCCAGAACCTTAGTCAGAGTTTAAGAGTCGAAGGA
AATTATATGTCATCACAGCCAAGGTTGGACCGTAGGTTCAGCGTTTGTGACCCAGTTAGC
TTGGGCGGCAGACCAAGTGATTTTGATGGAAATTTCCCATGTGCGGGATCACCAGATGAT
GAATATATTGAGGAGGATGGAAGCAATGGAACTTATTTTTCACCGTTTCCATATGGCTAC
GGTACCTCAATAGCTATGGAGGAAAACGATGAGCAACCAAATACCTCTAGGTACTGTTTG
GTTGCCAGCAAGCAGATGGTTGGTATATTTCTCACAGTTTGGGTGCGCAGCGAATTAAGA
AATGATGTGAAAAATCTTAAAGTCTCTTGTGTTGGTAGAGGTCTAATGGGGTATCTTGGA
AATAAGGGTTCGATATCAATAAGCATGTCTTTGCATCACACATCCTTTTGTTTTATCTGT
TGTCATTTGACATCTGGAGAAAAGGAGGGGGATGAATTGCGCAGAAATTCTGATGTTATG
GAAATCTTAAGAAAGACTAGATTTCCTCGGGTTCGTGGTGCTGGTGACATTAAGTCACCA
GAAACCATTCTTGAGCATGATCGTATCATATGGCTTGGGGATTTGAATTACCGGATTTCC
CTTTCATACTGCTCGGCAAAAGCACTCGTTGAAATGCATAACTGGAAGCAACTGTTGGAG
AAAGATCAACTACGAATAGAACGAAGATGCGGACGCGTTTTCCAGGGGTGGAAAGAAGGA
CGGATTTATTTTCCTCCAACATACAAATATTCATTCAACTCAGATCGCTATTCTGGGGAG
TGTGTGCATTCAAAGGAAAAGCGAAGAACACCAGCTTGGTGCGATCGTATTCTATGGCAT
GGTAATGGACTCATTCAGTTATCTTATGTTCGTGGAGAGTCGCGCTTCTCCGACCATAGA
CCGGTGTACAGCATTTTCATGGCGGAGGTTGAAATTATCCGCCAGAGGAGAAGAAATATG
GGCTGTTTCAACTCTAGAGTTGAGGTGGAAGAGCTTCTGCCATATTCTTACAGCTTTGGA
GACATCAAGTTCAACTAA

Peptide Sequence

PEP ID

Os03t0793600-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:33010944:33014444:1 gene:Os03g0793600 transcript:Os03t0793600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2. (Os03t0793600-00)
Sequence

MREESNKKSKLSWSKSLVRKWFNIKSKANDFHADYDASQGRNGHGGEWRTSCSEREAGTA
KKSRTDRMPKKNADCIRRGRTESDVSRLTEVQDYRIFASTWNVGGKSPSKGLDLDEWLHS
SPPADIYILGFQEIVPLNAGNVLGTEDNVPAKKWVSLIRRTLNRNPGASSYGGYHTPSPV
PDPVVELDADFEGSSRRHDNLSFFHRRSFQNLSQSLRVEGNYMSSQPRLDRRFSVCDPVS
LGGRPSDFDGNFPCAGSPDDEYIEEDGSNGTYFSPFPYGYGTSIAMEENDEQPNTSRYCL
VASKQMVGIFLTVWVRSELRNDVKNLKVSCVGRGLMGYLGNKGSISISMSLHHTSFCFIC
CHLTSGEKEGDELRRNSDVMEILRKTRFPRVRGAGDIKSPETILEHDRIIWLGDLNYRIS
LSYCSAKALVEMHNWKQLLEKDQLRIERRCGRVFQGWKEGRIYFPPTYKYSFNSDRYSGE
CVHSKEKRRTPAWCDRILWHGNGLIQLSYVRGESRFSDHRPVYSIFMAEVEIIRQRRRNM
GCFNSRVEVEELLPYSYSFGDIKFN

Transcript Sequence

Transcript ID

Os03t0793600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:33010944:33014444:1 gene:Os03g0793600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2. (Os03t0793600-00)
Sequence

GCTATGAGACAATGAGGGAAGAGAGCAACAAGAAGAGCAAGCTCTCATGGTCCAAATCCC
TTGTGAGGAAGTGGTTCAACATCAAGAGCAAGGCAAACGATTTCCATGCGGACTATGATG
CTAGCCAAGGAAGAAATGGTCATGGAGGTGAATGGAGGACCAGCTGCTCAGAGAGGGAGG
CAGGCACAGCCAAGAAAAGCAGAACTGACCGGATGCCAAAGAAGAATGCCGACTGCATTC
GTCGAGGAAGGACTGAATCTGATGTGTCACGCCTGACTGAAGTTCAAGATTACAGAATAT
TTGCTTCAACATGGAATGTGGGTGGTAAATCCCCATCAAAGGGATTAGATTTAGATGAGT
GGCTCCACTCTTCACCTCCTGCTGATATCTATATTCTAGGATTTCAAGAAATTGTTCCTT
TGAATGCTGGAAATGTTCTTGGTACTGAAGATAATGTTCCAGCAAAAAAGTGGGTATCCC
TCATTAGGAGGACACTGAACAGGAATCCTGGGGCTAGCAGCTATGGTGGCTATCACACAC
CATCTCCTGTCCCTGATCCAGTTGTTGAACTAGATGCTGATTTTGAGGGATCATCGAGAA
GACATGATAACTTGTCATTTTTCCATCGGCGATCATTCCAGAACCTTAGTCAGAGTTTAA
GAGTCGAAGGAAATTATATGTCATCACAGCCAAGGTTGGACCGTAGGTTCAGCGTTTGTG
ACCCAGTTAGCTTGGGCGGCAGACCAAGTGATTTTGATGGAAATTTCCCATGTGCGGGAT
CACCAGATGATGAATATATTGAGGAGGATGGAAGCAATGGAACTTATTTTTCACCGTTTC
CATATGGCTACGGTACCTCAATAGCTATGGAGGAAAACGATGAGCAACCAAATACCTCTA
GGTACTGTTTGGTTGCCAGCAAGCAGATGGTTGGTATATTTCTCACAGTTTGGGTGCGCA
GCGAATTAAGAAATGATGTGAAAAATCTTAAAGTCTCTTGTGTTGGTAGAGGTCTAATGG
GGTATCTTGGAAATAAGGGTTCGATATCAATAAGCATGTCTTTGCATCACACATCCTTTT
GTTTTATCTGTTGTCATTTGACATCTGGAGAAAAGGAGGGGGATGAATTGCGCAGAAATT
CTGATGTTATGGAAATCTTAAGAAAGACTAGATTTCCTCGGGTTCGTGGTGCTGGTGACA
TTAAGTCACCAGAAACCATTCTTGAGCATGATCGTATCATATGGCTTGGGGATTTGAATT
ACCGGATTTCCCTTTCATACTGCTCGGCAAAAGCACTCGTTGAAATGCATAACTGGAAGC
AACTGTTGGAGAAAGATCAACTACGAATAGAACGAAGATGCGGACGCGTTTTCCAGGGGT
GGAAAGAAGGACGGATTTATTTTCCTCCAACATACAAATATTCATTCAACTCAGATCGCT
ATTCTGGGGAGTGTGTGCATTCAAAGGAAAAGCGAAGAACACCAGCTTGGTGCGATCGTA
TTCTATGGCATGGTAATGGACTCATTCAGTTATCTTATGTTCGTGGAGAGTCGCGCTTCT
CCGACCATAGACCGGTGTACAGCATTTTCATGGCGGAGGTTGAAATTATCCGCCAGAGGA
GAAGAAATATGGGCTGTTTCAACTCTAGAGTTGAGGTGGAAGAGCTTCTGCCATATTCTT
ACAGCTTTGGAGACATCAAGTTCAACTAAGTCAGCTCATTATATGTTATGCTCAAGTTTT
CTGCTTTGTGTTTATGT