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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0788200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:32739765:32742267:1 gene:Os03g0788200 gene_biotype:protein_coding transcript_biotype:protein_coding description:MD-2-related lipid-recognition domain containing protein. (Os03t0788200-01)
Sequence

ATGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTC
CTCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTAT
CCTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCC
ACCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGAT
GTCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCT
TGCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCA
CCAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGC
ATCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAA

Peptide Sequence

PEP ID

Os03t0788200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:32739765:32742267:1 gene:Os03g0788200 transcript:Os03t0788200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:MD-2-related lipid-recognition domain containing protein. (Os03t0788200-01)
Sequence

MATDHRRFPVFLAAALLTLLLLPASAAATDVEYCRQGRDYPVKVSGVEIVPDPVVSGQPA
TFKISASTDKSITKGKLVIDVKYFFFHVHSESHNLCEETSCPVTGEFVLAHEQTLPSITP
PGSYTLTMRLLDDGNKELTCISFGFSIGFISPLALI

Transcript Sequence

Transcript ID

Os03t0788200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:32739765:32742267:1 gene:Os03g0788200 gene_biotype:protein_coding transcript_biotype:protein_coding description:MD-2-related lipid-recognition domain containing protein. (Os03t0788200-01)
Sequence

ACCTGCGAATCCTCTAGTCCTCGCGAGTCGCGACACGCGGAGCTTTGGCACCTGCAGCGA
TGGCGACCGACCACCGCCGCTTCCCCGTCTTCCTCGCCGCGGCGCTGCTCACCCTCCTCC
TCCTCCCGGCCTCCGCCGCGGCCACCGACGTCGAGTACTGCAGGCAGGGGCGGGATTATC
CTGTGAAGGTGAGCGGAGTGGAGATCGTCCCTGACCCCGTCGTCAGCGGGCAGCCGGCCA
CCTTCAAGATCTCCGCATCCACGGATAAAAGCATCACTAAGGGGAAGCTCGTGATAGATG
TCAAGTACTTCTTTTTCCATGTCCATTCAGAAAGTCACAACCTTTGTGAGGAGACCTCTT
GCCCAGTAACTGGTGAATTCGTGCTTGCGCACGAACAGACTTTACCATCAATCACCCCAC
CAGGTTCTTACACTCTCACCATGAGGCTACTAGATGACGGCAACAAGGAACTGACCTGCA
TCTCGTTTGGGTTCAGCATCGGGTTCATTTCACCTCTTGCTCTCATCTAAATTCAGCTGG
AGTCACAGCAATGTACTTGCAGAACTCCCATAGTCCTACCACAACATGTTCCACTAAAGC
CGGTTTAATCTCCCTGAGTTGAACATCTTACTACTTCTGGTGTTATGCAATAACTATAGT
CAATTGCCGCTTATGTTC