Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0787000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:32694811:32696014:1 gene:Os03g0787000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Syntaxin. (Os03t0787000-01)
Sequence

ATGAACAATCTCTTCTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGG
GATATTGAATCGGGCGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGCGGGGGCG
AGCCTTGATAGGTTCTTCGAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAG
CGGATCCAGCGGTCGCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCG
GCGGTGCGCGCGCTGCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAAGAAGGCC
AAGGTGGTGAAGCTCCGCCTCGAGTCGCTCGACCGCGCCAACGCCGCCAACCGCTCCGTC
CCCGGGTGCGGCCCGGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTC
CGCAAGAAGCTCCGCGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCCTCC
GAGTACCGGGAGACCGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGACGAG
GCGACGCTCGACAACCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCGATC
GCCGAGCAGGGCCGCGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCACGGC
GCCGTGGCGGAGCTGGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATGGCC
GTGCTGGTGGCGGCGCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGCGCG
CGCTCCTTCGTCGACCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAGAGC
ACCCGCAAGTGGACCTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTC
CTCCCCATCGTGCTCAAGTTCGTCAACAACAACAAGAGCAGCAGCAGCTCGCCGGCGCCG
GCGACGCCGTCGCCGCCGCCGCCAACGGCATGA

Peptide Sequence

PEP ID

Os03t0787000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:32694811:32696014:1 gene:Os03g0787000 transcript:Os03t0787000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Syntaxin. (Os03t0787000-01)
Sequence

MNNLFSSSWKRTGGGGGGDGDIESGGGVEMAPPPGAAAGASLDRFFEDVESIKDELRDLE
RIQRSLHDANEGGKSLHDAAAVRALRARMDADVAAAIKKAKVVKLRLESLDRANAANRSV
PGCGPGSSTDRTRTSVVAGLRKKLRDSMESFSSLRARISSEYRETVARRYYTVTGEQPDE
ATLDNLAETGEGERFLQRAIAEQGRGEVLGVVAEIQERHGAVAELERSLLELHQVFNDMA
VLVAAQGEQLDDIETHVGRARSFVDRGREQLVVARKHQKSTRKWTCIAIIILLVLILVVV
LPIVLKFVNNNKSSSSSPAPATPSPPPPTA

Transcript Sequence

Transcript ID

Os03t0787000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:32694811:32696014:1 gene:Os03g0787000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Syntaxin. (Os03t0787000-01)
Sequence

GGAGCAAATCGTGGCCGATCTTGTGTTCTAGTGAGTTGCTGCAGCCATGAACAATCTCTT
CTCTAGCTCGTGGAAGCGCACCGGCGGCGGCGGCGGCGGCGACGGGGATATTGAATCGGG
CGGCGGCGTGGAGATGGCGCCGCCGCCGGGGGCGGCGGCGGGGGCGAGCCTTGATAGGTT
CTTCGAGGACGTGGAGTCGATCAAGGACGAGCTCCGCGACCTGGAGCGGATCCAGCGGTC
GCTCCACGACGCCAACGAGGGGGGCAAGTCGCTGCACGACGCGGCGGCGGTGCGCGCGCT
GCGGGCGCGCATGGACGCCGACGTCGCCGCCGCCATCAAGAAGGCCAAGGTGGTGAAGCT
CCGCCTCGAGTCGCTCGACCGCGCCAACGCCGCCAACCGCTCCGTCCCCGGGTGCGGCCC
GGGCTCCTCCACCGACCGCACCCGCACCTCCGTCGTCGCCGGCCTCCGCAAGAAGCTCCG
CGACTCCATGGAATCCTTCTCCTCCCTCCGCGCCCGCATCTCCTCCGAGTACCGGGAGAC
CGTGGCGCGGCGGTACTACACCGTCACCGGCGAGCAGCCCGACGAGGCGACGCTCGACAA
CCTCGCCGAGACCGGGGAAGGGGAGCGGTTCCTGCAGCGCGCGATCGCCGAGCAGGGCCG
CGGCGAGGTGCTCGGCGTGGTCGCCGAGATCCAGGAGCGGCACGGCGCCGTGGCGGAGCT
GGAACGCTCGCTGCTCGAGCTCCACCAGGTGTTCAACGACATGGCCGTGCTGGTGGCGGC
GCAGGGGGAGCAGCTCGACGACATCGAGACCCATGTCGGCCGCGCGCGCTCCTTCGTCGA
CCGCGGCCGCGAGCAGCTGGTGGTGGCGCGGAAGCATCAGAAGAGCACCCGCAAGTGGAC
CTGCATCGCCATCATCATCCTGCTCGTCCTCATCCTCGTCGTCGTCCTCCCCATCGTGCT
CAAGTTCGTCAACAACAACAAGAGCAGCAGCAGCTCGCCGGCGCCGGCGACGCCGTCGCC
GCCGCCGCCAACGGCATGATGGTCGTATGATAGTCCATGTTGAGTTCATACTTCATAGTG
AGAGATTTCTATTTTTTTGTCGGGTTTTTTCTTTCGTGATTGTAATTACTTCTGTATGAT
TAGTTGATCGTCTTGATTATTATACATATCTGATTCTTCTAAATATCATTGCATTTGAAA
CTGC