Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0784000-03
CDS Infomation

cds chromosome:IRGSP-1.0:3:32532286:32539857:1 gene:Os03g0784000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to deoxyribodipyrimidine photolyase. (Os03t0784000-01);Similar to deoxyribodipyrimidine photolyase. (Os03t0784000-02);FAD dependent oxidoreductase family protein. (Os03t0784000-03)
Sequence

ATGAGCGCCGCCGCCGCCGCCGCAGCCGCCTCGGCTGCCAATGTCGCCGTCATCGGGGGC
GGAATATCGGGCGCTGTATGCGCGTCGCTGCTGGCCGCGCGCGGCGTGGCGGTGACGCTC
TTCGACTCCGGCCGCGGGGCCGGTGGCCGCATGGCGCAGCGGAGGGAGGTGATGGAGGAC
GGCACGGAGCTGCGATTCGACCACGGCGCGCCATACTTCACCGTGAGCAACGACGAGGTT
GCTCGGGTCGTGAGCGGGTGGGAGGCGCGGGGGCTCGTCGCCGAGTGGAAGGCCATGTTC
GCGTGCTTCGATCGGGAGGCCGGCAAATTCACTGATTTCGAGAAGGAGGGAACAATTAAG
AAGTATGTGGGAGTGCCAGGCATGAACTCAATATGCAAATCACTTTGTCTAGAGGATGGT
GTGGTGGCCAAATTTGGTGTCACCATTGGCAGGATGGACTGGATTCAAGATAGGAGTTCA
TGGTTACTGGCTAGTTTGGATGGGAGAGATCTTGGCCATTTTGATTATGTTGTAGCAACC
GATAAGAATATAGCATCACCAAGATTTTCTGGGCTAACTGGAAGACCACCGCCTCTTGAT
TTGTCATTGCTTCCACAATTGTCAATGATGATTCAGGATATCCCTGTTCGCCCCTGTTTT
GCTCTTATGTTAGCATTCTCAGAGCCTTTGACTAAGGTACCTGTTCAAGGTTTCTCATTC
AATAATTCTGACTACCTAAGCTGGGCCTTTTGTGATAGTAGCAAGCCAGGACGTGCTCAT
GTACCGCTTAACAGTCAGTCTTGGGTATTGCATTCGACAGCTGAGTATGCTTCAAAGGTA
ATCAATAATATTGGTCCACGGAAACCTTCAGCTGATGCCCTTGCTAAAGTGGCAGAGGAA
TTGCTCAAAGAATTTCAGGCTACAGGATTGAACATACCACAGCCAATCTTTATGAAAGCC
CACAGATGGGGCAGTGCTTTCCCAGCCATCGCTATAAGTGGAGACGACAAGTGTGTTTGG
GATAAGAGCATGAAATTGGCTATTTGCGGAGATTTTTGCACAAGTCCAAGTGTGGAAGGA
GCAGTCCTTAGTGGCATGAGAGGAGCCTCCAAAATACTACGGTGTTTAAACTTTCCGTCA
GGGTTGTGA

Peptide Sequence

PEP ID

Os03t0784000-03
PEP Infomation

pep chromosome:IRGSP-1.0:3:32532286:32539857:1 gene:Os03g0784000 transcript:Os03t0784000-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to deoxyribodipyrimidine photolyase. (Os03t0784000-01);Similar to deoxyribodipyrimidine photolyase. (Os03t0784000-02);FAD dependent oxidoreductase family protein. (Os03t0784000-03)
Sequence

MSAAAAAAAASAANVAVIGGGISGAVCASLLAARGVAVTLFDSGRGAGGRMAQRREVMED
GTELRFDHGAPYFTVSNDEVARVVSGWEARGLVAEWKAMFACFDREAGKFTDFEKEGTIK
KYVGVPGMNSICKSLCLEDGVVAKFGVTIGRMDWIQDRSSWLLASLDGRDLGHFDYVVAT
DKNIASPRFSGLTGRPPPLDLSLLPQLSMMIQDIPVRPCFALMLAFSEPLTKVPVQGFSF
NNSDYLSWAFCDSSKPGRAHVPLNSQSWVLHSTAEYASKVINNIGPRKPSADALAKVAEE
LLKEFQATGLNIPQPIFMKAHRWGSAFPAIAISGDDKCVWDKSMKLAICGDFCTSPSVEG
AVLSGMRGASKILRCLNFPSGL

Transcript Sequence

Transcript ID

Os03t0784000-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:32532286:32539857:1 gene:Os03g0784000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to deoxyribodipyrimidine photolyase. (Os03t0784000-01);Similar to deoxyribodipyrimidine photolyase. (Os03t0784000-02);FAD dependent oxidoreductase family protein. (Os03t0784000-03)
Sequence

GGAAAAGCTCTCCATTCTCCGCACCGCACCCCGTCGCCGGGAAGCCTCGAACAATGAGCG
CCGCCGCCGCCGCCGCAGCCGCCTCGGCTGCCAATGTCGCCGTCATCGGGGGCGGAATAT
CGGGCGCTGTATGCGCGTCGCTGCTGGCCGCGCGCGGCGTGGCGGTGACGCTCTTCGACT
CCGGCCGCGGGGCCGGTGGCCGCATGGCGCAGCGGAGGGAGGTGATGGAGGACGGCACGG
AGCTGCGATTCGACCACGGCGCGCCATACTTCACCGTGAGCAACGACGAGGTTGCTCGGG
TCGTGAGCGGGTGGGAGGCGCGGGGGCTCGTCGCCGAGTGGAAGGCCATGTTCGCGTGCT
TCGATCGGGAGGCCGGCAAATTCACTGATTTCGAGAAGGAGGGAACAATTAAGAAGTATG
TGGGAGTGCCAGGCATGAACTCAATATGCAAATCACTTTGTCTAGAGGATGGTGTGGTGG
CCAAATTTGGTGTCACCATTGGCAGGATGGACTGGATTCAAGATAGGAGTTCATGGTTAC
TGGCTAGTTTGGATGGGAGAGATCTTGGCCATTTTGATTATGTTGTAGCAACCGATAAGA
ATATAGCATCACCAAGATTTTCTGGGCTAACTGGAAGACCACCGCCTCTTGATTTGTCAT
TGCTTCCACAATTGTCAATGATGATTCAGGATATCCCTGTTCGCCCCTGTTTTGCTCTTA
TGTTAGCATTCTCAGAGCCTTTGACTAAGGTACCTGTTCAAGGTTTCTCATTCAATAATT
CTGACTACCTAAGCTGGGCCTTTTGTGATAGTAGCAAGCCAGGACGTGCTCATGTACCGC
TTAACAGTCAGTCTTGGGTATTGCATTCGACAGCTGAGTATGCTTCAAAGGTAATCAATA
ATATTGGTCCACGGAAACCTTCAGCTGATGCCCTTGCTAAAGTGGCAGAGGAATTGCTCA
AAGAATTTCAGGCTACAGGATTGAACATACCACAGCCAATCTTTATGAAAGCCCACAGAT
GGGGCAGTGCTTTCCCAGCCATCGCTATAAGTGGAGACGACAAGTGTGTTTGGGATAAGA
GCATGAAATTGGCTATTTGCGGAGATTTTTGCACAAGTCCAAGTGTGGAAGGAGCAGTCC
TTAGTGGCATGAGAGGAGCCTCCAAAATACTACGGTGTTTAAACTTTCCGTCAGGGTTGT
GACTTAAACAGTTAATCAAACCCCAACTGAGAGTTGAGGGCCATATTGTTTACCGACCAA
TTAGGTATGAAATAAGAAATCAGTACCGATGGCAATGTTATTTTTTATGAAGTTTATTTG
CTTTATTATCTATTCCATGTCATATAGAAAAGCCAGGTTCCACTGGAAGTGCTGTTTCTC
TGTTGGCCTACTATGCCTTGGACTAAAACACACTAACTACAAGTCTAGGTTGTCTGCCAG
ACAGAACCTTGTATGAGTGCACAAGATGAAATGCATGATGGATATTGTAAAGAAGCCATA
CACCAACCACTCCTGTTATCTGGTTGTGTATCATGGAATGTCACCAAATATTACTAGGGG
GTTAGGGAACATGCTTGTCATGCAAGTGATGTAGCAGAATAGCCTTTGGAGAATGCTTGC
TGAACATATTAATTTGACAGAAATGAAGGAACAATAGTTATAATTGATCAAGATTTGTTC
TGTCAGTTGGTCTCAATCTCAATTCGGTGATACTTTATACAGATATGTGGAAATGTCTGC
ATACCCTTTATATTGGATTCTACTTCCTAAAAGTTCAGAAGTCTAACTGTAGCACATTCA
AGGTGACATGATTATAATACGGTCATGTAATGCTTGAAATGTGAGTTTAAATATACTTTA
CAGTTACAATTTTAAATCCCATTTCATTGAGGACAAAGTTTTGCACTCCAACAATTTCTT
AGCATCAGGAAAGGCTATGATTTTTGTGGTCCATAGGTCCTGTAAGGACCATCATATCTT
TAAACTGTCATATTTAGATATTCCTTATAGCTTTTTTGTGTTCAAGTCTTCTACCCTTGC
AATGATATCAGATGCTGCCCAGCGACCTAATATAATAAATGTCTAAGTGCACTGTTGGGA
GAAATCTTTTCCAACCAGACTTCATATTCTTATAGCTTTGTTTTTAATCTAATTTGCCCA
ACAGAGCAACTTTCAGTTTAGTTTGGTAGTGTCTACTGATGTATTTTGGTACAATATGTG
CTCTATTGTGAGTGAATAAATAGGTTAGTAAATTCACACTACTATTTGGAGCTAGAAATG
CTCAAAGCAATTGTATCGCTGCACATAATGGTTCCACATCTTCAACAGAAACAGGTACGA
TTTTCAGTTTAAAAGAAGGCTTTGCATGGTTTGTTCCCTATGTAATCATTTCAATTATCT
GTTGCATATTCTCTGAGTTCATCTTATTAGCCTTTACATTCCTATATCCTTGCATCCACC
TTTTCCTTTTCTTGTTGAAGAATTTTGGGTTTGTCCCACAGGAAATTTTCATGTGCAAAT
TGGTCACCCTTCATGAGCATCTGTGAAAAAGGTGAGCAGCACATTTTCTGAAAGCTTCAT
CCAGGGTCCCAACTGAATCGAAGTACGCTACGCTGCTCACAACAGTCACAGCAGATGCAT
GGTCCTGGCATGGTGGCGTACGTGTGGCCACCCAATCATATATATCTATCAACCTGTCAA
GAGAGTATATATATGAGGCAAATCACATTTGAAGACAAATTTGCTGGATTTGGAGCATCT
CAAGCCATAACCGATGCCCAGCTCGGCAGCTCTCCAGGCCTCCACGTTGCATGAAGAGTG
CCACCTATTTCGACGGATCAAAGAATACATCACCAGCCCGTCAACACGCGCACCTCGGAT
TTGGTGTTTTTACTTAAAGTGAGTTAAGCTGCATGCTTCTTGCAGTCGCAGATCCGGGTC
CGGCCTGCCCAGAACCTGTCTCTCCGCTGCGTTAAAGGAGTAATTAGCATACTCCCTCCG
TGTTCGTAAATAAAGTCGTTTAGAACAATATTTAAGTTAAATCTTGATAATATAAATCAT
AAATAACTCTCAAGTTGTTGAGTTTGAAAATATAAAAATTATA