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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0778100-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:32273066:32274170:-1 gene:Os03g0778100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOTOSYSTEM I SUBUNIT description:Similar to Photosystem-1 F subunit. (Os03t0778100-01);Similar to Photosystem-1 F subunit. (Os03t0778100-02);Similar to Photosystem-1 F subunit. (Os03t0778100-03)
Sequence

ATGGCCGCCCTCGCCGCCGCATCCACCGCCTTCGCCGCCAAGCCGCGCCTGGCGCGCGCG
CCGTCGTCCCCGGCCGCGCGGTTCTCCGTGTCGTGCTCCGCGTCGGGCAACAACGGCGGC
GCCGGCGAGATGGCGCAGTCGCTGGCGGCGTCGGCCAAGACGTTCTCCGCGGCGCTGGCG
CTGTCCTCGGTGCTGCTCTCCTCGGCGGCGACGTCGCCGCCCCCCGCCGCCGCCGACATC
GCCGGGCTGACGCCGTGCAAGGAGTCCAAGGCGTTCGCGAAGCGGGAGAAGCAGTCCATC
AAGAAGCTCCAGTCGTCGCTCGCCATCAACGCCACCATCGAGAAGACGAAGCGCCGCTTC
GAGAACTACGGCAAGTTCGGCCTGCTCTGCGGCGCCGACGGCCTCCCGCACCTCATCGTC
AGCGGCGACCAGCGGCACTGGGGCGAGTTCATCACCCCGGGCTTGCTCTTCCTCTACATC
GCCGGCTGGATCGGCTGGGTCGGCAGGAGCTACCTCATCGCCATCAGCGGCGAGAAGAAG
CCGGCCATGAGGGAGATCATCATCGACGTCGAGCTCGCCGTCAAGCTCCTCCCGAGGGGG
TTCATCTGGCCCGTCGCCGCCTACCGTGAGCTCATCACCGGCAACCTCGTCGTCGACGAC
GCTGACATCGGCTACTGA

Peptide Sequence

PEP ID

Os03t0778100-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:32273066:32274170:-1 gene:Os03g0778100 transcript:Os03t0778100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOTOSYSTEM I SUBUNIT description:Similar to Photosystem-1 F subunit. (Os03t0778100-01);Similar to Photosystem-1 F subunit. (Os03t0778100-02);Similar to Photosystem-1 F subunit. (Os03t0778100-03)
Sequence

MAALAAASTAFAAKPRLARAPSSPAARFSVSCSASGNNGGAGEMAQSLAASAKTFSAALA
LSSVLLSSAATSPPPAAADIAGLTPCKESKAFAKREKQSIKKLQSSLAINATIEKTKRRF
ENYGKFGLLCGADGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKK
PAMREIIIDVELAVKLLPRGFIWPVAAYRELITGNLVVDDADIGY

Transcript Sequence

Transcript ID

Os03t0778100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:32273066:32274170:-1 gene:Os03g0778100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHOTOSYSTEM I SUBUNIT description:Similar to Photosystem-1 F subunit. (Os03t0778100-01);Similar to Photosystem-1 F subunit. (Os03t0778100-02);Similar to Photosystem-1 F subunit. (Os03t0778100-03)
Sequence

TACAAACCCGCAAACCCACTCCGATCGCAAATACTCTCTCTCGCCGATAGCAGCAGCAGC
AGCAATGGCCGCCCTCGCCGCCGCATCCACCGCCTTCGCCGCCAAGCCGCGCCTGGCGCG
CGCGCCGTCGTCCCCGGCCGCGCGGTTCTCCGTGTCGTGCTCCGCGTCGGGCAACAACGG
CGGCGCCGGCGAGATGGCGCAGTCGCTGGCGGCGTCGGCCAAGACGTTCTCCGCGGCGCT
GGCGCTGTCCTCGGTGCTGCTCTCCTCGGCGGCGACGTCGCCGCCCCCCGCCGCCGCCGA
CATCGCCGGGCTGACGCCGTGCAAGGAGTCCAAGGCGTTCGCGAAGCGGGAGAAGCAGTC
CATCAAGAAGCTCCAGTCGTCGCTCGCCATCAACGCCACCATCGAGAAGACGAAGCGCCG
CTTCGAGAACTACGGCAAGTTCGGCCTGCTCTGCGGCGCCGACGGCCTCCCGCACCTCAT
CGTCAGCGGCGACCAGCGGCACTGGGGCGAGTTCATCACCCCGGGCTTGCTCTTCCTCTA
CATCGCCGGCTGGATCGGCTGGGTCGGCAGGAGCTACCTCATCGCCATCAGCGGCGAGAA
GAAGCCGGCCATGAGGGAGATCATCATCGACGTCGAGCTCGCCGTCAAGCTCCTCCCGAG
GGGGTTCATCTGGCCCGTCGCCGCCTACCGTGAGCTCATCACCGGCAACCTCGTCGTCGA
CGACGCTGACATCGGCTACTGATCACCACATGGATGCTTGGCTACTCAAGCCCCAGGTGA
GTTGATTTGGCAGTGGAGGAAGAGGGCTCGTGCATGGTGATTTGTGTGGTTTGGGTGTAG
AAGCTGATAGGATCATGGAGGAATGGAAGATCTGTTGTACTTAAGAAAAACTAAGTCTTG
TATACCGTACCTCTCTCTTGTGTGTATTTACCATCTTAAGATTCTTGAGAACAATTCCTT
CGTGC