Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0769000-00
CDS Infomation	cds chromosome:IRGSP-1.0:3:31825518:31829665:-1 gene:Os03g0769000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ternary complex factor MIP1. (Os03t0769000-00)
Sequence	AGTGTTCTTGGCTGGTTGCTTTCAGTTCTTGATTGGTTCATACCTTGGTGCCAAGAAATG GAGGTGGAGGCGATGGAGAAGAAGGGACACAGAGCCTTTGCTAAGGCAATTAAGTCTTTC GGTTCTTCAGAAAGGCACAAGCGTTCTAAGAGTGATCTTGAGGATATGTGTGCTAAAGAT GCGCTGTATGCTTCAGATAAAACATGCGTTCAGCCTAAGCCAGATGCTGTAAAAGTTAAG GTAAAAAGTGATATCAACGCTGAAGTGCAACCTGGGAGAGGAGCGCAGAGCTTCTTGAGA AAAGAGATTCTCCAGCTAGAAAAGCACCTCAAGGATCAGCAGGTCATGCGTGGCGCCCTG GAGAAAGCTCTGGGACCGAACGCTACTGCTGCTCCAGTCAACGTATCAAACGAGAATCCA ATGCCAAAGGATGCCAAAGAACTTATCAGGGAGATTGCTACACTAGAGCTTGAGGTGAAG AACATGGAGCAGTATCTCCTTACCCTGTACAGGAAGGCCTTTGAGCAGCAAGTGCCCACA TTTTCCCCTCCTGACCACCGGGGAGCTCCGAAGCCGCCGGTACCGGCGATGGCGGCAGTG AGCTCGCAGCCTGTGCAGCTGCAGAAATCACCCAGTGTCAAGGCATCTCGCAAGAACAAC AGAGCTGACGCAATGCTGCGATCCAGCTACCCGCCACCGTCCCGTAGGACGTTGAACGAT CCAGTGATGACGGATTGCTCTACGTCGGGTTGCTCTAGCAGGCTAGGTGAATCTGATGTT CTCCGGTGCCAGTCTGCGGTGTCGTACCGCGGCATTTGTTCGTCCAGGATTTCACCATCG GAGGACAGTCTTGCGAGAGCTCTTCGGTCATGCCACTCTCAACCTTTCTCATTTCTGGAG GAAGGAGAGAGTACTGCAGCAGGAGTGATAAGCTTAGCAGAGTATCTAGGCACTAATGTA GCTGACCACATTCCTGAAACTCCCAACAACCTATCGGAGGAGATGGTGAGATGCATGGCA GGGGTGTACTGCAAACTTGCAGATCCCCCTTTGGTTCACCACGGCTCGTCGTCTTCGCCA ACGTCATCGTTCTCCTCGACGAGTGCGATATCCCCGCAGTATCTGGGGGATATCTGGAGT CCCAATTACAAGAGAGAATCTACTCTGGACTCTCGTTTGATAAACCCTTTCCATGTTGAG GGGTTGAAGGAGTTCAGTGGACCATACAATACAATGGTTGAGGTTCCACTGATTTGCCGC GATAGTCGGAGGCTAAAAGAAGTTGAGGATCTGCTCCAGACTTACAAGTTGATTTTGTAC CGGTTGGAAACCGTCGATCTCAGGAGAATGACGAACGAAGAAAAGATTGCATTCTGGGTC AACATACACAACGCCCAGCTGATGCATGCTTATCTAAAGTATGGCGTCCCACAGAACAAT CTGAAGAAGACATCACTTCTTGTTAAGGCTGCCTGCAAAATTGCTGGACGGAGCATCAAT GTAGCTGTTATCCAGAGCATGGTTCTTGGATGCAACACATACTGTCCTGGACAGTGGTTA CGTACTTTGCTTCACCCAAGGATCAAAAGCAAAGTGGGCAAAGTAGGGCATGTGTGGCAA GCCTTTGCCGTTGCACAATCAGAGCCTCTTTTACGCTTTGCGCTTTGTTCAGGAAGCCAT TCTGATCCCGCGGTGAGAGTGTACACTCCAAAGAGGCTGTTCCATCAACTGGAGGCTGCC AAGGAGGAGTTCATCCGGGCAACGGTGGGCATCTGGAAGGAGCAGAAAATACTGCTTCCA AAGCTCGTCGAGGCGTATGCGAAAGACGTCAAGCTCTCGTCGCAGGGCCTTGTCGACATG GTGCAGCGCTACCTCCCGGAGAGCTTGAGGATGGCAATGCAGAAGTGCCAGCAGAGCAGA TCCAGCAAGATCATAGAATGGGTGCCTCATAACCTGAATTTCCGGTATCTGCTGTCCAGG GACCTGGCATTTCCTCACCTGAACTGA

Peptide Sequence

PEP ID	Os03t0769000-00
PEP Infomation	pep chromosome:IRGSP-1.0:3:31825518:31829665:-1 gene:Os03g0769000 transcript:Os03t0769000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ternary complex factor MIP1. (Os03t0769000-00)
Sequence	SVLGWLLSVLDWFIPWCQEMEVEAMEKKGHRAFAKAIKSFGSSERHKRSKSDLEDMCAKD ALYASDKTCVQPKPDAVKVKVKSDINAEVQPGRGAQSFLRKEILQLEKHLKDQQVMRGAL EKALGPNATAAPVNVSNENPMPKDAKELIREIATLELEVKNMEQYLLTLYRKAFEQQVPT FSPPDHRGAPKPPVPAMAAVSSQPVQLQKSPSVKASRKNNRADAMLRSSYPPPSRRTLND PVMTDCSTSGCSSRLGESDVLRCQSAVSYRGICSSRISPSEDSLARALRSCHSQPFSFLE EGESTAAGVISLAEYLGTNVADHIPETPNNLSEEMVRCMAGVYCKLADPPLVHHGSSSSP TSSFSSTSAISPQYLGDIWSPNYKRESTLDSRLINPFHVEGLKEFSGPYNTMVEVPLICR DSRRLKEVEDLLQTYKLILYRLETVDLRRMTNEEKIAFWVNIHNAQLMHAYLKYGVPQNN LKKTSLLVKAACKIAGRSINVAVIQSMVLGCNTYCPGQWLRTLLHPRIKSKVGKVGHVWQ AFAVAQSEPLLRFALCSGSHSDPAVRVYTPKRLFHQLEAAKEEFIRATVGIWKEQKILLP KLVEAYAKDVKLSSQGLVDMVQRYLPESLRMAMQKCQQSRSSKIIEWVPHNLNFRYLLSR DLAFPHLN

Transcript Sequence

Transcript ID	Os03t0769000-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:31825518:31829665:-1 gene:Os03g0769000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to ternary complex factor MIP1. (Os03t0769000-00)
Sequence	CTTTCCATTCCCTCTCTGAAAAAACAACAATTTAGTTTTTGACCTGAAGGGTGGTAGTAG TGGGCTAGTTGGCGGTAGATGGCATTGACACTGGTTGCCAAGCACAGTGCAGGTTTTGTT GGAGCCTAGTGTGGCTTCAGAGCTCAGAAGCAGCCACATTTCTGCATTCTTGGATCATTT GGAGCTCTCCTTGTTTGTTGTTGGGTCTCTTCTCTTTCCTGCTTCCGAGTTCTGTGAACC AGCCAACTAATCTCTGTAAGTTCTACTATCTTGTTCTTATTTCTCCTGCTCCTTTGCCCC CAAGGATATGGCTACTACTGCTTGATGTCCTGTTGCTTAGAGTGTTCTTGGCTGGTTGCT TTCAGTTCTTGATTGGTTCATACCTTGGTGCCAAGAAATGGAGGTGGAGGCGATGGAGAA GAAGGGACACAGAGCCTTTGCTAAGGCAATTAAGTCTTTCGGTTCTTCAGAAAGGCACAA GCGTTCTAAGAGTGATCTTGAGGATATGTGTGCTAAAGATGCGCTGTATGCTTCAGATAA AACATGCGTTCAGCCTAAGCCAGATGCTGTAAAAGTTAAGGTAAAAAGTGATATCAACGC TGAAGTGCAACCTGGGAGAGGAGCGCAGAGCTTCTTGAGAAAAGAGATTCTCCAGCTAGA AAAGCACCTCAAGGATCAGCAGGTCATGCGTGGCGCCCTGGAGAAAGCTCTGGGACCGAA CGCTACTGCTGCTCCAGTCAACGTATCAAACGAGAATCCAATGCCAAAGGATGCCAAAGA ACTTATCAGGGAGATTGCTACACTAGAGCTTGAGGTGAAGAACATGGAGCAGTATCTCCT TACCCTGTACAGGAAGGCCTTTGAGCAGCAAGTGCCCACATTTTCCCCTCCTGACCACCG GGGAGCTCCGAAGCCGCCGGTACCGGCGATGGCGGCAGTGAGCTCGCAGCCTGTGCAGCT GCAGAAATCACCCAGTGTCAAGGCATCTCGCAAGAACAACAGAGCTGACGCAATGCTGCG ATCCAGCTACCCGCCACCGTCCCGTAGGACGTTGAACGATCCAGTGATGACGGATTGCTC TACGTCGGGTTGCTCTAGCAGGCTAGGTGAATCTGATGTTCTCCGGTGCCAGTCTGCGGT GTCGTACCGCGGCATTTGTTCGTCCAGGATTTCACCATCGGAGGACAGTCTTGCGAGAGC TCTTCGGTCATGCCACTCTCAACCTTTCTCATTTCTGGAGGAAGGAGAGAGTACTGCAGC AGGAGTGATAAGCTTAGCAGAGTATCTAGGCACTAATGTAGCTGACCACATTCCTGAAAC TCCCAACAACCTATCGGAGGAGATGGTGAGATGCATGGCAGGGGTGTACTGCAAACTTGC AGATCCCCCTTTGGTTCACCACGGCTCGTCGTCTTCGCCAACGTCATCGTTCTCCTCGAC GAGTGCGATATCCCCGCAGTATCTGGGGGATATCTGGAGTCCCAATTACAAGAGAGAATC TACTCTGGACTCTCGTTTGATAAACCCTTTCCATGTTGAGGGGTTGAAGGAGTTCAGTGG ACCATACAATACAATGGTTGAGGTTCCACTGATTTGCCGCGATAGTCGGAGGCTAAAAGA AGTTGAGGATCTGCTCCAGACTTACAAGTTGATTTTGTACCGGTTGGAAACCGTCGATCT CAGGAGAATGACGAACGAAGAAAAGATTGCATTCTGGGTCAACATACACAACGCCCAGCT GATGCATGCTTATCTAAAGTATGGCGTCCCACAGAACAATCTGAAGAAGACATCACTTCT TGTTAAGGCTGCCTGCAAAATTGCTGGACGGAGCATCAATGTAGCTGTTATCCAGAGCAT GGTTCTTGGATGCAACACATACTGTCCTGGACAGTGGTTACGTACTTTGCTTCACCCAAG GATCAAAAGCAAAGTGGGCAAAGTAGGGCATGTGTGGCAAGCCTTTGCCGTTGCACAATC AGAGCCTCTTTTACGCTTTGCGCTTTGTTCAGGAAGCCATTCTGATCCCGCGGTGAGAGT GTACACTCCAAAGAGGCTGTTCCATCAACTGGAGGCTGCCAAGGAGGAGTTCATCCGGGC AACGGTGGGCATCTGGAAGGAGCAGAAAATACTGCTTCCAAAGCTCGTCGAGGCGTATGC GAAAGACGTCAAGCTCTCGTCGCAGGGCCTTGTCGACATGGTGCAGCGCTACCTCCCGGA GAGCTTGAGGATGGCAATGCAGAAGTGCCAGCAGAGCAGATCCAGCAAGATCATAGAATG GGTGCCTCATAACCTGAATTTCCGGTATCTGCTGTCCAGGGACCTGGCATTTCCTCACCT GAACTGACTAATCTTACTGCTCTCTGCTCAAATAGGCTGTGAAATGAGCTGAAGTATATG CATTGTATCATATAGATTTAGACGTAAGGATTGTGTAGGGTTGATGTGTGAGTAGTGTTT ATCTTTGCCTGTAAAAATTTTTGTAGATGAACAGTAAAAGGGGAAGAAATGAGAAAGAAG CATCCTTTG