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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0751600-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:30989987:30991567:1 gene:Os03g0751600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Circumsporozoite protein. (Os03t0751600-01);Similar to Circumsporozoite protein. (Os03t0751600-02)
Sequence

ATGAAGCGGACCATCATCGTCAAAGTGGACTTGGAATGCGAGCGCTGCTATGCCAAGATC
GACAGGGTGCTCACCAGGATCAGAGACAAGGGTGAGTTCGTCATCGACGACATCGAGTTC
GACGTGAAGCACAACAAGGTGATCGTGTCGGGGCCCTTCGACCCGGACAAGCTCGCAGAC
AAGCTCTGCTGCAAGGCGTGCAAGATCATCAAGGAGATCGAGATCGTCGACCTCCCGCCG
CCGCCTCCGCCGCCGGCGCCGGAGCCGGAGCCGGAGCCACCCAAGAAAGAAGAGCCCCAG
CCACCGCCTCCTAAGGAGGAGGAGAAGCCCGAGCCGCCGCCGGCGGTGATTATCGTGGAG
CCACCGGCGCCGGCGCCCGAGCCGGAGCCCGAGCCGCCGAAGAAAGAGCCGCCGCCGCCG
CCGCCTCCCAAGCAGGAGCCATGCCCGCCGCCGCCCAAGGTCGTCGAGGTCCCTTACCCC
TGGCCCTACCCCTACCCGTTCCCGTCGTGGCCGTCCGACTGCTGCTGCCACCATGGCCAC
GGCGGCTGCCACTGCTGCTCCTGCGGGAAGGCGCCGGAGCCGGCGCCGGCGCCGGCGCCT
CCGCCGCCGCAGTACATCCCCTGCTACCCGCCGCAGCAGCCCTACCCTTGCGGCGGCTAC
AGGATCGTCTGCGAGGAGGACCCCTCCTACGCCTGCGCCATCATGTGA

Peptide Sequence

PEP ID

Os03t0751600-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:30989987:30991567:1 gene:Os03g0751600 transcript:Os03t0751600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Circumsporozoite protein. (Os03t0751600-01);Similar to Circumsporozoite protein. (Os03t0751600-02)
Sequence

MKRTIIVKVDLECERCYAKIDRVLTRIRDKGEFVIDDIEFDVKHNKVIVSGPFDPDKLAD
KLCCKACKIIKEIEIVDLPPPPPPPAPEPEPEPPKKEEPQPPPPKEEEKPEPPPAVIIVE
PPAPAPEPEPEPPKKEPPPPPPPKQEPCPPPPKVVEVPYPWPYPYPFPSWPSDCCCHHGH
GGCHCCSCGKAPEPAPAPAPPPPQYIPCYPPQQPYPCGGYRIVCEEDPSYACAIM

Transcript Sequence

Transcript ID

Os03t0751600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:30989987:30991567:1 gene:Os03g0751600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Circumsporozoite protein. (Os03t0751600-01);Similar to Circumsporozoite protein. (Os03t0751600-02)
Sequence

ATCTCCACCTCCCGCGGCATCACCACTCACTCCACCGCCGCGCGCTTGTTCGCAGCTCTT
CCTCCTCCTCGCATTGCAGGCGGCTGCCGACTGAATCAAGATGAAGCGGACCATCATCGT
CAAAGTGGACTTGGAATGCGAGCGCTGCTATGCCAAGATCGACAGGGTGCTCACCAGGAT
CAGAGACAAGGGTGAGTTCGTCATCGACGACATCGAGTTCGACGTGAAGCACAACAAGGT
GATCGTGTCGGGGCCCTTCGACCCGGACAAGCTCGCAGACAAGCTCTGCTGCAAGGCGTG
CAAGATCATCAAGGAGATCGAGATCGTCGACCTCCCGCCGCCGCCTCCGCCGCCGGCGCC
GGAGCCGGAGCCGGAGCCACCCAAGAAAGAAGAGCCCCAGCCACCGCCTCCTAAGGAGGA
GGAGAAGCCCGAGCCGCCGCCGGCGGTGATTATCGTGGAGCCACCGGCGCCGGCGCCCGA
GCCGGAGCCCGAGCCGCCGAAGAAAGAGCCGCCGCCGCCGCCGCCTCCCAAGCAGGAGCC
ATGCCCGCCGCCGCCCAAGGTCGTCGAGGTCCCTTACCCCTGGCCCTACCCCTACCCGTT
CCCGTCGTGGCCGTCCGACTGCTGCTGCCACCATGGCCACGGCGGCTGCCACTGCTGCTC
CTGCGGGAAGGCGCCGGAGCCGGCGCCGGCGCCGGCGCCTCCGCCGCCGCAGTACATCCC
CTGCTACCCGCCGCAGCAGCCCTACCCTTGCGGCGGCTACAGGATCGTCTGCGAGGAGGA
CCCCTCCTACGCCTGCGCCATCATGTGACCTAATGATCATCGTTATCTTCTCCTTAATTA
CCTTCTCCGATCTCTCCTCCTGTATAATTAAGCACGCACCGTACAGACACGCACATATAT
ACTACACATCCTACACGTACTCCTCTTTATCTACTCTTATACACTCCCTCTGTAACTGTT
GATTTCCTTACGTCCCATTTAGAGGTGAAAAATAAGTAAGTATATATCGTCATT