Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0748800-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:30815621:30822590:-1 gene:Os03g0748800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Helicase associated domain family protein, expressed. (Os03t0748800-01)
Sequence	ATGCGCGGCGGCTTGCGCCGCGGGCTGGGCATCCTCCTCCTCCCGCTCTCCAGCTCGCCC AGCCGGGCGCCGCGGCCGCCGGTCCCGCTCGCTGCTCTGCTCGTCTACCACCGCCGCCTC GATGTCTTCGCCCGCCGGTCCTTCTGCAGCTCCGGCGGGGGCTACGCCGTGGAGCAGTTC TCCGACGACGAGTACGACCACGAGTACGAGGATCACCGGCCGTCGTCGTCGGTGGCGAAC ATCGACGAGTGGAGGTGGAAGCTGAGCATGCTGCAGCGCAACGCGGAGGAGCAGGAGATC ATCTCCAGAGACCGGAGGGATCGCCGGGACTACGACCAGATCGCCAACCTCGCCAAGAGG ATGGGCCTCTACAGTGAGATGTATGGGAAGGTCATTGTTGCGAGCAAGGTCCCGCTGCCG AATTACAGGCCGGACCTGGACGACAAGCGGCCACAAAGAGAGGTGGTGATTCCATTAAGC TTACAGAGGAGGGTTGAAGGACTTGTGCAGGAGCACCTTGATCGTGCACTCTTGCCGGAT AAATGTGGAACTGGAAATGGTTCTGAGATGGCTGAGAAAGCTGAGAATGTGAACCTGGAT GAGCAGCAGGATTCCCTTCTCGATCGATCGGTCATGGAGAAGATCCTTCAGAGGAAGAGC ATACGGATGCGCAATTTTCAGAGAAGTTGGCAGGAATCACCTGAAGGAGTTAAGATGCTA GAATTCCGGAAATCACTTCCTGCATACAAGGAAAAGGAAAGGCTTCTAGCAGCCATTGCA CGCAATCAGGTTATAGTGATATCTGGAGAGACAGGGTGTGGCAAAACAACCCAGTTGCCT CAATTTGTATTAGAGTCAGAGATAGAATCTGGCCGTGGGGCCTTTTGTAATATAATCTGC ACACAACCTCGGAGAATTTCTGCAATGGCAGTTGCAGAGAGAGTATCCACTGAGAGAGGA GAGAATCTTGGTGAATCGGTTGGCTACAAAGTTCGATTGGAGGGAATCAAAGGAAAAGAC ACACATTTGCTTTTCTGCACAAGTGGTATATTACTACGACGATTGCTCAGTGACAGAAAC CTGAATGGAGTAACTCATGTATTTGTTGATGAAATACATGAAAGAGGCATGAATGAAGAT TTCTTATTGATTGTCCTAAAAGACCTATTATCACGACGCCGTGATTTGAGGTTGATCTTG ATGAGTGCTACTCTAAATGCGGAACTGTTCTCAAGTTATTTTGGAGGAGCACCAACTATC CATATTCCTGGATTCACATATCCAGTGAGGGCACATTTTCTGGAAGATATATTAGAGAGG ACTGGCTATAAGTTGACCTCAAGCAATCAACTTGACGATTATGGACAAGATAAAGTCTGG AAAACTCAGAGGCAACTATTACCTAGAAAAAGGAAAAATCAAATCACAACGCTTGTTGAG GATGCCCTTAAAACTTCTAGCTTTGAGACCTATGGATCGAGGACACGCGATTCTCTGTCA AATTGGAATCCTGATTGCATAGGGTTTAACCTTATAGAAGCTGTTCTTTGCCACATATGT CGTAAAGAGCGGTCTGGTGCAGTTCTAGTTTTCATGACCGGATGGGATGATATCAGTTGC TTGAAGGATCAACTAAAGGCACACCCTTTGTTGGGCGACCCTAACAGAGTTTTACTGCTT GCATGCCATGGTTCCATGGCTACAGCTGAACAGAGGTTAATCTTTGAGAAGCCACCTCCT AATGTTCGGAAGATAGTGCTTGCCACTAACATGGCAGAAGCAAGTATTACAATAAATGAT ATTGTTTTTGTCGTGGATTGTGGAAAGGCAAAGGAAACGACATACGATGCACTAAATAAC ACTCCCTGCTTGCTTCCCTCATGGATTTCAAAGGCTTCTGCTCGTCAGAGGAGGGGCAGA GCTGGTCGTGTGCAACCTGGAGAATGCTATCACCTCTACCCTAGATGTGTGTATGATGCA TTTGCAGATTACCAGCTTCCTGAGCTCCTTAGAACTCCATTGAATTCACTATGTTTGCAG ATAAAAAGTTTGCAAGTTGGCAGCATTGGGGAGTTTCTATCAGCTGCCTTACAGCCCCCG GCACCACTAGCTGTCCAAAATGCAGTGGAATTCCTGAAAATGATTGGAGCATTAGATGAA AATGAGAACCTAACTGATCTAGGAAGATACCTTTCCATGCTTCCTGTTGATCCAAAGTTG GGGAAGATGCTTATAATGGGTGCAGTTTTCCGCTGCATTGATCCTATACTTACCGTGGTT GCTGGATTGAGTGCCCGGGATCCTTTCCTGCTGCCACAGGACAAGAGAGATTTGGCAGGA ACCGCCAAATCAAGATTCTCAGCAAAAGATTATAGTGATCATATGGCCCTAGTCCGGGCT TATGAAGGATGGAAGGATGCAGAGAGAGAAGGGTCTGCTTATGAATACTGCTGGAGAAAT TTCCTTTCTGCTCAAACACTTCAAGCCATTCACTCTCTTCGGAAGCAATTCAGCTATATA TTAAAGGATGCTGGTTTGGTAGACTCTGATGCAAATACAAATAATAGTTTGAGCCATAAT CAATCATTGGTCCGTGGTATCATATGTTCTGGACTTTTCCCAGGCATAACATCAGTTGTG CATAGAGAAAACTCTATGTCGTTCAAGACCATGGATGATGGCCAAGTTCTTCTTTATGCT AATTCAGTGAATGCTAAGTACCAGACCATCCCTTATCCATGGCTGGTCTTTGGTGAGAAG GTGAAGGTAAATGCTGTCTTCATCCGTGACTCAACCGGAGTATCAGATTCCATCCTGATC TTATTTGGTGGTGCTGTTACAAAAGGAAGCATGGCTGGGCACCTGAAGATGCTCGATGGT TACATCGATTTGTTTATGGATCCTAGCCTGTGTGAATGCTACTTGCAACTTAAAGAAGAG CTTGATAAACTTGTACAGAAGAAGCTTGAAGACCCCAGCTTCGACATCCACAAGGAAGGA AAGTACATCTTATATGCCGCACAAGAGCTCGCTGCAGGCGACCTATGCGAAGGAAGGTTT GTGTTTGGCCGCGAGACGAGCAGAGCAAGGCTCAGCAGCAGCGACGACACCAAAGGCAAC ATTATCAAGGACGGAATGAACCCCAAGAGCCTGCTCCAGACCCTGCTGATGAGGGCCGGC CACACCCCTCCCAAGTACAAGACAAAGCACCTCAAGACCAACGAGTTCAGGGCCATAGTG GAGTTCAAAGGGATGCAGTTTGCCGGGAAACCCAAGAGGAACAAGCAGCTCGCCGAGAGG GACGCCGCCATTGAAGCGCTGGGATGGCTGACACAGACCTCAGGGACAAAGCTTCAGGAT GATGGCGATGATTCCCCTCTTGACCTGACGGATAACATGCTGAAGTTGCTCAGTAGACCG AGGCGGCGGTCCAGAAACAATTCCAGGAAATGA

Peptide Sequence

PEP ID	Os03t0748800-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:30815621:30822590:-1 gene:Os03g0748800 transcript:Os03t0748800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Helicase associated domain family protein, expressed. (Os03t0748800-01)
Sequence	MRGGLRRGLGILLLPLSSSPSRAPRPPVPLAALLVYHRRLDVFARRSFCSSGGGYAVEQF SDDEYDHEYEDHRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR MGLYSEMYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPD KCGTGNGSEMAEKAENVNLDEQQDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGVKML EFRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIIC TQPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRN LNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAPTI HIPGFTYPVRAHFLEDILERTGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVE DALKTSSFETYGSRTRDSLSNWNPDCIGFNLIEAVLCHICRKERSGAVLVFMTGWDDISC LKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKIVLATNMAEASITIND IVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDA FADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLAVQNAVEFLKMIGALDE NENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSARDPFLLPQDKRDLAG TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSYI LKDAGLVDSDANTNNSLSHNQSLVRGIICSGLFPGITSVVHRENSMSFKTMDDGQVLLYA NSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSMAGHLKMLDG YIDLFMDPSLCECYLQLKEELDKLVQKKLEDPSFDIHKEGKYILYAAQELAAGDLCEGRF VFGRETSRARLSSSDDTKGNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAIV EFKGMQFAGKPKRNKQLAERDAAIEALGWLTQTSGTKLQDDGDDSPLDLTDNMLKLLSRP RRRSRNNSRK

Transcript Sequence

Transcript ID	Os03t0748800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:30815621:30822590:-1 gene:Os03g0748800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Helicase associated domain family protein, expressed. (Os03t0748800-01)
Sequence	GGAGCGCCCACCGCCGCCGCCGCCGCCGCCTCCTCGCCTCTCCCCCTCTCCCGACGCCGG CGTCCACTCTCCCTCCCCTCCCCTCCCCACCTCCTAACACATGCCCGCGCCGCAGCAGCA GCAGCAGTGGTAGAGCCCAGCCTGCCTACCCTACCAACCGACGGGCAGTAGCATGCGCGG CGGCTTGCGCCGCGGGCTGGGCATCCTCCTCCTCCCGCTCTCCAGCTCGCCCAGCCGGGC GCCGCGGCCGCCGGTCCCGCTCGCTGCTCTGCTCGTCTACCACCGCCGCCTCGATGTCTT CGCCCGCCGGTCCTTCTGCAGCTCCGGCGGGGGCTACGCCGTGGAGCAGTTCTCCGACGA CGAGTACGACCACGAGTACGAGGATCACCGGCCGTCGTCGTCGGTGGCGAACATCGACGA GTGGAGGTGGAAGCTGAGCATGCTGCAGCGCAACGCGGAGGAGCAGGAGATCATCTCCAG AGACCGGAGGGATCGCCGGGACTACGACCAGATCGCCAACCTCGCCAAGAGGATGGGCCT CTACAGTGAGATGTATGGGAAGGTCATTGTTGCGAGCAAGGTCCCGCTGCCGAATTACAG GCCGGACCTGGACGACAAGCGGCCACAAAGAGAGGTGGTGATTCCATTAAGCTTACAGAG GAGGGTTGAAGGACTTGTGCAGGAGCACCTTGATCGTGCACTCTTGCCGGATAAATGTGG AACTGGAAATGGTTCTGAGATGGCTGAGAAAGCTGAGAATGTGAACCTGGATGAGCAGCA GGATTCCCTTCTCGATCGATCGGTCATGGAGAAGATCCTTCAGAGGAAGAGCATACGGAT GCGCAATTTTCAGAGAAGTTGGCAGGAATCACCTGAAGGAGTTAAGATGCTAGAATTCCG GAAATCACTTCCTGCATACAAGGAAAAGGAAAGGCTTCTAGCAGCCATTGCACGCAATCA GGTTATAGTGATATCTGGAGAGACAGGGTGTGGCAAAACAACCCAGTTGCCTCAATTTGT ATTAGAGTCAGAGATAGAATCTGGCCGTGGGGCCTTTTGTAATATAATCTGCACACAACC TCGGAGAATTTCTGCAATGGCAGTTGCAGAGAGAGTATCCACTGAGAGAGGAGAGAATCT TGGTGAATCGGTTGGCTACAAAGTTCGATTGGAGGGAATCAAAGGAAAAGACACACATTT GCTTTTCTGCACAAGTGGTATATTACTACGACGATTGCTCAGTGACAGAAACCTGAATGG AGTAACTCATGTATTTGTTGATGAAATACATGAAAGAGGCATGAATGAAGATTTCTTATT GATTGTCCTAAAAGACCTATTATCACGACGCCGTGATTTGAGGTTGATCTTGATGAGTGC TACTCTAAATGCGGAACTGTTCTCAAGTTATTTTGGAGGAGCACCAACTATCCATATTCC TGGATTCACATATCCAGTGAGGGCACATTTTCTGGAAGATATATTAGAGAGGACTGGCTA TAAGTTGACCTCAAGCAATCAACTTGACGATTATGGACAAGATAAAGTCTGGAAAACTCA GAGGCAACTATTACCTAGAAAAAGGAAAAATCAAATCACAACGCTTGTTGAGGATGCCCT TAAAACTTCTAGCTTTGAGACCTATGGATCGAGGACACGCGATTCTCTGTCAAATTGGAA TCCTGATTGCATAGGGTTTAACCTTATAGAAGCTGTTCTTTGCCACATATGTCGTAAAGA GCGGTCTGGTGCAGTTCTAGTTTTCATGACCGGATGGGATGATATCAGTTGCTTGAAGGA TCAACTAAAGGCACACCCTTTGTTGGGCGACCCTAACAGAGTTTTACTGCTTGCATGCCA TGGTTCCATGGCTACAGCTGAACAGAGGTTAATCTTTGAGAAGCCACCTCCTAATGTTCG GAAGATAGTGCTTGCCACTAACATGGCAGAAGCAAGTATTACAATAAATGATATTGTTTT TGTCGTGGATTGTGGAAAGGCAAAGGAAACGACATACGATGCACTAAATAACACTCCCTG CTTGCTTCCCTCATGGATTTCAAAGGCTTCTGCTCGTCAGAGGAGGGGCAGAGCTGGTCG TGTGCAACCTGGAGAATGCTATCACCTCTACCCTAGATGTGTGTATGATGCATTTGCAGA TTACCAGCTTCCTGAGCTCCTTAGAACTCCATTGAATTCACTATGTTTGCAGATAAAAAG TTTGCAAGTTGGCAGCATTGGGGAGTTTCTATCAGCTGCCTTACAGCCCCCGGCACCACT AGCTGTCCAAAATGCAGTGGAATTCCTGAAAATGATTGGAGCATTAGATGAAAATGAGAA CCTAACTGATCTAGGAAGATACCTTTCCATGCTTCCTGTTGATCCAAAGTTGGGGAAGAT GCTTATAATGGGTGCAGTTTTCCGCTGCATTGATCCTATACTTACCGTGGTTGCTGGATT GAGTGCCCGGGATCCTTTCCTGCTGCCACAGGACAAGAGAGATTTGGCAGGAACCGCCAA ATCAAGATTCTCAGCAAAAGATTATAGTGATCATATGGCCCTAGTCCGGGCTTATGAAGG ATGGAAGGATGCAGAGAGAGAAGGGTCTGCTTATGAATACTGCTGGAGAAATTTCCTTTC TGCTCAAACACTTCAAGCCATTCACTCTCTTCGGAAGCAATTCAGCTATATATTAAAGGA TGCTGGTTTGGTAGACTCTGATGCAAATACAAATAATAGTTTGAGCCATAATCAATCATT GGTCCGTGGTATCATATGTTCTGGACTTTTCCCAGGCATAACATCAGTTGTGCATAGAGA AAACTCTATGTCGTTCAAGACCATGGATGATGGCCAAGTTCTTCTTTATGCTAATTCAGT GAATGCTAAGTACCAGACCATCCCTTATCCATGGCTGGTCTTTGGTGAGAAGGTGAAGGT AAATGCTGTCTTCATCCGTGACTCAACCGGAGTATCAGATTCCATCCTGATCTTATTTGG TGGTGCTGTTACAAAAGGAAGCATGGCTGGGCACCTGAAGATGCTCGATGGTTACATCGA TTTGTTTATGGATCCTAGCCTGTGTGAATGCTACTTGCAACTTAAAGAAGAGCTTGATAA ACTTGTACAGAAGAAGCTTGAAGACCCCAGCTTCGACATCCACAAGGAAGGAAAGTACAT CTTATATGCCGCACAAGAGCTCGCTGCAGGCGACCTATGCGAAGGAAGGTTTGTGTTTGG CCGCGAGACGAGCAGAGCAAGGCTCAGCAGCAGCGACGACACCAAAGGCAACATTATCAA GGACGGAATGAACCCCAAGAGCCTGCTCCAGACCCTGCTGATGAGGGCCGGCCACACCCC TCCCAAGTACAAGACAAAGCACCTCAAGACCAACGAGTTCAGGGCCATAGTGGAGTTCAA AGGGATGCAGTTTGCCGGGAAACCCAAGAGGAACAAGCAGCTCGCCGAGAGGGACGCCGC CATTGAAGCGCTGGGATGGCTGACACAGACCTCAGGGACAAAGCTTCAGGATGATGGCGA TGATTCCCCTCTTGACCTGACGGATAACATGCTGAAGTTGCTCAGTAGACCGAGGCGGCG GTCCAGAAACAATTCCAGGAAATGATTTTCCTGTCAAGGACATCTAGTACTTAGGTTCAT AAGAAGCCCATGATAGTTTTGTTATGGTGCCATTTTTTTGTTGGCCTATTGGTTGGATGC ATTCGAGCTTGGTTTCACCGGATTCATCGCCCCTTTTGGAATTTTGCTCCGTGTCGAGCG TTTAGATGCTCAAATTAGTGTGACCATTATTGGTTGCATCCCTTGAACATGGTTATGTAA TTTGTTAGTTTGTACAGCTTATTATGTATACAACGGCATGATGTATGATCGAGAAGTGAG GAAAAATGGAAGGTACTGGATTTTGCCTGTACTAATTCCGCATTC