Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0727200-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:29626761:29632749:-1 gene:Os03g0727200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 3 description:Similar to HOS13 protein (Fragment). (Os03t0727200-00)
Sequence

ATGGAGGAGCTTGAAGGCCACCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTG
CCGTTTCCCAAGGTCTCCGTGCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCC
GCCGCCGCTGCAGGCGGAGCTCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGAC
GGCGGCGGCCGCGCCGCCGGAGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCAC
CCTCGCTACCACCGCCTCCTCGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCG
GAGGCGGCCGAGGAGATCGCGGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCC
GCGGCGGCGAGCCGCATGCCGCCGGCGCCGGAGGACCCGGAGCTCAAATTAGTAACTGAG
GATTACTGCAAGCTGCTCGTGGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCC
GAGGAGTTCCTCAGGACGGTGGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTT
ACAGCTCTAATCTCAGAATCCAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAA
GACGGCAGCGGCATGGAGATGATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGAC
CCTCGCTCCGACGACAAAGCGCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTG
GGAGGCCTGAGGAAGGAGCTGTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCG
AGGCAGAAGCTGCTCACCTGGTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATG
GAGAAGATCGCCCTCGCCGAGTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTC
ATCAACCAGCGGAAGCGCCACTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAG
GCCTACCACCACCAGAGCACCGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGC
CTCGTCGGAGCGACGGCGGCGGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCAT
GGCGTGTGGCGCGCATAG

Peptide Sequence

PEP ID

Os03t0727200-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:29626761:29632749:-1 gene:Os03g0727200 transcript:Os03t0727200-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 3 description:Similar to HOS13 protein (Fragment). (Os03t0727200-00)
Sequence

MEELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGARQAVAPATRDGGD
GGGRAAGVLDDPVKARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAA
AAASRMPPAPEDPELKLVTEDYCKLLVECKEELSRPLQEAEEFLRTVESELNSINSGPPL
TALISESKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRKYSGYL
GGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCF
INQRKRHWKPTEEMEFAVMEAYHHQSTDAAAAFYVDVDARLVGATAAAPASAVYTARPDH
GVWRA

Transcript Sequence

Transcript ID

Os03t0727200-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:29626761:29632749:-1 gene:Os03g0727200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX 3 description:Similar to HOS13 protein (Fragment). (Os03t0727200-00)
Sequence

ATAAAAACAAGCCATTCAAAATTATTACACCAGCCATTACACCAGCTGCGGCCGGCTGCT
TTTATCTGATTTGACAATGGACGTGACGGCCACCCGACCTCTCTTTTCCTACTAGCTCTC
CCCTACCCTACCCCTCTTTCCTTCTAGCAGTAGCCTCTACTACAGTCTACACACCCTCTC
TATGCAAAACGCAATCTCATCTCTGTGCAGCCACTCATCCGATATTTCCCCCCATTTCTT
TTCCTCTCCACTGTTTCCCTCCTCCTTTAATTATTCCCCCCCACTTCGCCTAGCTTTACA
AACCCCCACAAATCGTCATTCTAACCAAAAGAAATCAGCAGGATTAGCCCTAGCTAAGTA
CTCCCAATAGCTGTGATAAACTGATAATTAGCCTTCTCTTCTTCCTTGCTGAGCTGGTCG
GTGTCGTGTACCAAGAAACCCTCATCAAGCACATACGCTAATGGAGGAGCTTGAAGGCCA
CCGGGGTGAAGGCCGGCTGCCTCCTCCTCCTCCGTTGCTGCCGTTTCCCAAGGTCTCCGT
GCAAGTCTACACCGTTCCTAGCTCGTCCACCGCCGCCTCCGCCGCCGCTGCAGGCGGAGC
TCGTCAGGCTGTTGCACCGGCGACGCGGGACGGCGGCGACGGCGGCGGCCGCGCCGCCGG
AGTTCTTGACGACCCTGTCAAGGCCAGGATCGTCTCCCACCCTCGCTACCACCGCCTCCT
CGCCGCCTTCCTCGACTGCCACAAGGTTGGCTGCCCGGCGGAGGCGGCCGAGGAGATCGC
GGCGGCGGCGCGGGTGCGGGAGGCGCGGCAGCGGGCGGCCGCGGCGGCGAGCCGCATGCC
GCCGGCGCCGGAGGACCCGGAGCTCAAATTAGTAACTGAGGATTACTGCAAGCTGCTCGT
GGAGTGTAAGGAGGAGCTCAGCCGGCCGCTCCAGGAGGCCGAGGAGTTCCTCAGGACGGT
GGAGTCAGAGCTCAACTCCATCAATTCTGGGCCACCCCTTACAGCTCTAATCTCAGAATC
CAAAGCCGGCCTCGATTCGTCGGACGACGACGAACACGAAGACGGCAGCGGCATGGAGAT
GATGGAGGCCGCGGAAGACGAGGACCTCGGCATCATCGACCCTCGCTCCGACGACAAAGC
GCTGAAGAGGCACCTGCTGAGGAAGTACAGCGGTTACCTGGGAGGCCTGAGGAAGGAGCT
GTCGAAGAAGAGGAAGAAAGGGAAGCTCCCCAAGGAGGCGAGGCAGAAGCTGCTCACCTG
GTGGGAGCTCCATTACCGGTGGCCGAACCCGTCGGAGATGGAGAAGATCGCCCTCGCCGA
GTCGACGGGGCTGGAGCAGAAGCAGATCAACAACTGTTTCATCAACCAGCGGAAGCGCCA
CTGGAAGCCCACGGAGGAGATGGAGTTCGCCGTCATGGAGGCCTACCACCACCAGAGCAC
CGATGCCGCGGCGGCGTTCTACGTCGACGTCGACGCCCGCCTCGTCGGAGCGACGGCGGC
GGCTCCGGCATCGGCCGTGTACACCGCCAGGCCGGATCATGGCGTGTGGCGCGCATAGCC
GTTGCTCGATTCGCCCGTTGCCGCCATCTGGAATTAATCTGAACTGCCCTTGCCTGTTAC
ATATAGTAGGGTTGTTGATGATGGTTTCATATGTTTTTCCCCAAAGGGAAAGTCAGCTTG
GACATTGGACCAATCAAGAAATGAAATCTCAGC