Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0726300-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:29543831:29550120:-1 gene:Os03g0726300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3 description:Protein of unknown function DUF221 domain containing protein. (Os03t0726300-01)
Sequence	ATGGAATTTTCTGCCCTTCTGACTTCGGCAGGCATAAACATCGGCCTCTGTGCGCTCTTC CTGTCACTCTATTCAGTCCTTAGGAAGCAGCCTCACAACTATGGCGTCTACTTCGGGAGG CGGCTCGCCGAGGAGAAGTTCCGGCAGCAGGTCGACTACTTCTCGCTTGAGAGGCTCTTG CCTACCGCTGGATGGATAGTGAAAGCGTACTGGTGCACGGAAGAGGAGATACGACGGGTT GCTGGCTTGGATTCCGTGGTGTTCCTCCGCCTCTTCATCTTCAGCATACGTATCTTCTCG ATAACTTCTCTTGTTTGCATATTTGGAGTGCTTCCTGTTAATTACCATGGGAAAGAAACG AATCACGGACGTATTCCAGCAGAGTCTCTCAATGTATTCACAATTGCAAATCTCAAAGAA GGATCACGAATGCTTTGGGTGCATTGTGTTGCCTTATATGTTATAACAATATCAGCTTGT ATTCTTCTATACTATGAGTATAAGTATATATCAAGGAAGAGATTGGCGCATATTACTGGA TCACCACCTGGTCCGGGTCATTTTTCTGTGATTGTTCGATCAATACCAAAGTCAGATAAT GAGCTACTTGATGACACTATCAGAAATTTCTTTGTTAATTATCATGGATCCAGTTACTTG TCACATCAGATGATCTACCGGAAAGGAAGTATGCAGAAATTTGTGGATAATGCAGAGAGG GTATATAGGAAATTTGTAAGAGTTAAGATGTCTTCATTTGGACAGAGTAGAAGGTCTGAC TTGTCCAGATGTGGTCTTTGTGGAGTACGGGCTTCGTCGTTTCAGCAATATCGCAATAAA TTCATCAATTCCAAGAAGCCAGACCTAAGTGATCCAGAAGTAATTGAAGCTCAGAAGGAT TGTCCAGGTGCTATAGTATTCTTCAAGACTCGCTATGCGGCAATTGTTGCTTCACGAATT CTTCAATCTTCAAATCCTATGCTATGGGTGACAGATTTTGCTCCTGAGCCAAGGGATGTC TATTGGTCAAACCTCTGGATCCCCTATAGACAGATCTGGCTCCGGAAAATAGCAACACTT GCAGCTAGTGTTGCCTTCATGTTTGTTTTTATTGTCCCCGTTGCATTCGTCCAAAGCATG ATGCAACTGGATCAGATTGAGCAGCTATTTCCAAGCCTGAAAAACATGTTGAAGAAGCCC TTTTTTGTCAAACTTGTAACGGGATACCTCCCTAGCGTCGTTCTGCTGCTGTCCCTGTAC ACAGTTCCTCCATTGATGATGTTCTTCTCTTCCATAGAAGGATCGATTTCTCGCAGTGGC AGGAAAAAAAGTGCTTGCTGCAAAATTTTGTTCTTTACCATCTGGAACGTCTTCTTTGTC AATGTCCTGTCAGGATCCGTGCTAAATCAGCTAAATGTCTTCACTAGACCAAGGGATATG CCATCTATGCTTGCCGAACTTGTACCAAAGCAGGCAACTTTCTTCATCACTTATGTCCTC ACATCAGGATGGGCAAGTCTATGCTCCGAGATATTGCAAGTGTACAACTTAGTATATAAC TTCTTCAGAAAATGTATATTTTGCTACCGGGATGATCCAGAATATGGCTACTCTTTCCCT TACCATACTGAAGTCCCGAAAGTCCTCCTGTTCAACCTGCTTGGCTTCACATTTTCGATA ATGGCACCTCTCATACTGCCCTTCTTGCTAGTCTACTTTTGCCTCGGCTACCTAGTGTAT CGCAATCAGATCCTAAATGTCTACTACCCAAAGTACGAAATGGGAGGGAAACTGTGGCCA ATCATGCACAGCACCTTGGTTTTCGCCCTGGTTTTGACACAGACCATAGCTCTTGGAGTG TTCACCATAAAGCACGCTACTATATCTTCAGGGTTCACCGTCCTACTAATCATCGGGACA GTCCTCTTCCATCAGTATTGCAGACACCGGTTTTCAAGCATATTCAACTCCTTTTCTGCC CAGGATCTGATAGAGATGGACAGAGACGATGAACAATCCGGGAGGATGGAGGAGATCCAC AAGCACCTTCTGGACGCCTACTCCCAAGGCACCACCAACATGGACAACTCCAGTTCTTCC AGGAATGGAGGGGCTCCAATCGAAATGATCATGGAAGACCCTGCGCAGGATGCACAGGAT TCTAACCAAGAACTCTGTGACGCCGTGAAGGAAGTGACTGGGTCGATTCAGGAACATGCC GACGAGATGTGA

Peptide Sequence

PEP ID	Os03t0726300-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:29543831:29550120:-1 gene:Os03g0726300 transcript:Os03t0726300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3 description:Protein of unknown function DUF221 domain containing protein. (Os03t0726300-01)
Sequence	MEFSALLTSAGINIGLCALFLSLYSVLRKQPHNYGVYFGRRLAEEKFRQQVDYFSLERLL PTAGWIVKAYWCTEEEIRRVAGLDSVVFLRLFIFSIRIFSITSLVCIFGVLPVNYHGKET NHGRIPAESLNVFTIANLKEGSRMLWVHCVALYVITISACILLYYEYKYISRKRLAHITG SPPGPGHFSVIVRSIPKSDNELLDDTIRNFFVNYHGSSYLSHQMIYRKGSMQKFVDNAER VYRKFVRVKMSSFGQSRRSDLSRCGLCGVRASSFQQYRNKFINSKKPDLSDPEVIEAQKD CPGAIVFFKTRYAAIVASRILQSSNPMLWVTDFAPEPRDVYWSNLWIPYRQIWLRKIATL AASVAFMFVFIVPVAFVQSMMQLDQIEQLFPSLKNMLKKPFFVKLVTGYLPSVVLLLSLY TVPPLMMFFSSIEGSISRSGRKKSACCKILFFTIWNVFFVNVLSGSVLNQLNVFTRPRDM PSMLAELVPKQATFFITYVLTSGWASLCSEILQVYNLVYNFFRKCIFCYRDDPEYGYSFP YHTEVPKVLLFNLLGFTFSIMAPLILPFLLVYFCLGYLVYRNQILNVYYPKYEMGGKLWP IMHSTLVFALVLTQTIALGVFTIKHATISSGFTVLLIIGTVLFHQYCRHRFSSIFNSFSA QDLIEMDRDDEQSGRMEEIHKHLLDAYSQGTTNMDNSSSSRNGGAPIEMIMEDPAQDAQD SNQELCDAVKEVTGSIQEHADEM

Transcript Sequence

Transcript ID	Os03t0726300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:29543831:29550120:-1 gene:Os03g0726300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYPEROSMOLALITY-GATED CALCIUM-PERMEABLE CHANNEL 2.3 description:Protein of unknown function DUF221 domain containing protein. (Os03t0726300-01)
Sequence	ATCACCACCACCACCGCACGGGCGGGCGGGCGGGCGATCGATTCGGCGAGCGCTTGCGCA CACGGTCGCTTCGTGCGGCGTCGGAGACAACCCCGGCAGCCTCTCCCCCTCCCCCGCGCC GCCGCCGCGGCCAACCTCCTCCTCCATCCGGCGCACGCCCGGCGACCGACCGGCCGGACG ACCGATCGTCGACCGCCGCCGCCGCATCGATTCCAAGCTCTTTCATGGGTAGATGGTCAG GATCGCCAATCGGTAGAGCCGGGGGATGGAATTTTCTGCCCTTCTGACTTCGGCAGGCAT AAACATCGGCCTCTGTGCGCTCTTCCTGTCACTCTATTCAGTCCTTAGGAAGCAGCCTCA CAACTATGGCGTCTACTTCGGGAGGCGGCTCGCCGAGGAGAAGTTCCGGCAGCAGGTCGA CTACTTCTCGCTTGAGAGGCTCTTGCCTACCGCTGGATGGATAGTGAAAGCGTACTGGTG CACGGAAGAGGAGATACGACGGGTTGCTGGCTTGGATTCCGTGGTGTTCCTCCGCCTCTT CATCTTCAGCATACGTATCTTCTCGATAACTTCTCTTGTTTGCATATTTGGAGTGCTTCC TGTTAATTACCATGGGAAAGAAACGAATCACGGACGTATTCCAGCAGAGTCTCTCAATGT ATTCACAATTGCAAATCTCAAAGAAGGATCACGAATGCTTTGGGTGCATTGTGTTGCCTT ATATGTTATAACAATATCAGCTTGTATTCTTCTATACTATGAGTATAAGTATATATCAAG GAAGAGATTGGCGCATATTACTGGATCACCACCTGGTCCGGGTCATTTTTCTGTGATTGT TCGATCAATACCAAAGTCAGATAATGAGCTACTTGATGACACTATCAGAAATTTCTTTGT TAATTATCATGGATCCAGTTACTTGTCACATCAGATGATCTACCGGAAAGGAAGTATGCA GAAATTTGTGGATAATGCAGAGAGGGTATATAGGAAATTTGTAAGAGTTAAGATGTCTTC ATTTGGACAGAGTAGAAGGTCTGACTTGTCCAGATGTGGTCTTTGTGGAGTACGGGCTTC GTCGTTTCAGCAATATCGCAATAAATTCATCAATTCCAAGAAGCCAGACCTAAGTGATCC AGAAGTAATTGAAGCTCAGAAGGATTGTCCAGGTGCTATAGTATTCTTCAAGACTCGCTA TGCGGCAATTGTTGCTTCACGAATTCTTCAATCTTCAAATCCTATGCTATGGGTGACAGA TTTTGCTCCTGAGCCAAGGGATGTCTATTGGTCAAACCTCTGGATCCCCTATAGACAGAT CTGGCTCCGGAAAATAGCAACACTTGCAGCTAGTGTTGCCTTCATGTTTGTTTTTATTGT CCCCGTTGCATTCGTCCAAAGCATGATGCAACTGGATCAGATTGAGCAGCTATTTCCAAG CCTGAAAAACATGTTGAAGAAGCCCTTTTTTGTCAAACTTGTAACGGGATACCTCCCTAG CGTCGTTCTGCTGCTGTCCCTGTACACAGTTCCTCCATTGATGATGTTCTTCTCTTCCAT AGAAGGATCGATTTCTCGCAGTGGCAGGAAAAAAAGTGCTTGCTGCAAAATTTTGTTCTT TACCATCTGGAACGTCTTCTTTGTCAATGTCCTGTCAGGATCCGTGCTAAATCAGCTAAA TGTCTTCACTAGACCAAGGGATATGCCATCTATGCTTGCCGAACTTGTACCAAAGCAGGC AACTTTCTTCATCACTTATGTCCTCACATCAGGATGGGCAAGTCTATGCTCCGAGATATT GCAAGTGTACAACTTAGTATATAACTTCTTCAGAAAATGTATATTTTGCTACCGGGATGA TCCAGAATATGGCTACTCTTTCCCTTACCATACTGAAGTCCCGAAAGTCCTCCTGTTCAA CCTGCTTGGCTTCACATTTTCGATAATGGCACCTCTCATACTGCCCTTCTTGCTAGTCTA CTTTTGCCTCGGCTACCTAGTGTATCGCAATCAGATCCTAAATGTCTACTACCCAAAGTA CGAAATGGGAGGGAAACTGTGGCCAATCATGCACAGCACCTTGGTTTTCGCCCTGGTTTT GACACAGACCATAGCTCTTGGAGTGTTCACCATAAAGCACGCTACTATATCTTCAGGGTT CACCGTCCTACTAATCATCGGGACAGTCCTCTTCCATCAGTATTGCAGACACCGGTTTTC AAGCATATTCAACTCCTTTTCTGCCCAGGATCTGATAGAGATGGACAGAGACGATGAACA ATCCGGGAGGATGGAGGAGATCCACAAGCACCTTCTGGACGCCTACTCCCAAGGCACCAC CAACATGGACAACTCCAGTTCTTCCAGGAATGGAGGGGCTCCAATCGAAATGATCATGGA AGACCCTGCGCAGGATGCACAGGATTCTAACCAAGAACTCTGTGACGCCGTGAAGGAAGT GACTGGGTCGATTCAGGAACATGCCGACGAGATGTGACAACTCTGCTAGTATATATTGTT CCGTGTCTTGTTTGATTCCATTTGTAATCTACCATTCGCTCTGATGATGTGTGTAGCTTC GTTATATGCTTATACTTAGGCCAAGTAGCTGCTTGATTAATCCGGAGAAAGCTCCTTGAA TGGTTTAAGGGGGGGAACTAACTGTGCAGATTACCCGAAGTCTCTCCCTGTCTCACTTTA CCACCACGGATGATGTGCATGACACAGATTCGTAGCATGGGCATCGAGCTCGTGGATCAA CTTGCTTTACCTTGCAAATTTGTGTACTTTGAAAAATTGGAATATATAACTGTATATCCA ACTTTATGTGCTGCCCCAATGTTCCTCTTAACGTTGTATATTTTC